data_2Y9
#
_chem_comp.id 2Y9
_chem_comp.name
"(3S,4R,5R)-N-cyclopropyl-N'-[(2R)-1-ethoxy-4-methylpentan-2-yl]-4-hydroxy-N-[5-(propan-2-yl)pyridin-2-yl]piperidine-3,5-dicarboxamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H42 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-04-11
_chem_comp.pdbx_modified_date 2014-08-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 474.636
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2Y9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4Q1N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2Y9 C1 C1 C 0 1 N N N N N N 68.818 7.885 43.576 1.149 -0.145 -1.156 C1 2Y9 1
2Y9 C2 C2 C 0 1 N N S N N N 68.754 7.836 45.136 1.100 -0.734 0.255 C2 2Y9 2
2Y9 C3 C3 C 0 1 N N R N N N 68.812 6.328 45.548 -0.329 -1.186 0.566 C3 2Y9 3
2Y9 C4 C4 C 0 1 N N R N N N 67.614 5.512 44.931 -1.277 0.008 0.419 C4 2Y9 4
2Y9 C5 C5 C 0 1 N N N N N N 67.518 5.716 43.382 -1.159 0.575 -0.998 C5 2Y9 5
2Y9 N6 N6 N 0 1 N N N N N N 67.648 7.154 43.016 0.227 0.994 -1.245 N6 2Y9 6
2Y9 C7 C7 C 0 1 N N N N N N 69.835 8.660 45.839 2.031 -1.916 0.340 C7 2Y9 7
2Y9 C8 C8 C 0 1 N N N N N N 67.631 4.044 45.306 -2.694 -0.441 0.665 C8 2Y9 8
2Y9 O9 O9 O 0 1 N N N N N N 68.701 3.520 45.618 -2.925 -1.601 0.931 O9 2Y9 9
2Y9 N10 N10 N 0 1 N N N N N N 69.652 9.458 46.971 3.365 -1.727 0.311 N10 2Y9 10
2Y9 O11 O11 O 0 1 N N N N N N 70.959 8.478 45.390 1.580 -3.037 0.435 O11 2Y9 11
2Y9 N12 N12 N 0 1 N N N N N N 66.418 3.413 45.262 -3.705 0.447 0.589 N12 2Y9 12
2Y9 O13 O13 O 0 1 N N N N N N 70.087 5.775 45.169 -0.713 -2.216 -0.347 O13 2Y9 13
2Y9 C14 C14 C 0 1 N N N N N N 68.358 9.847 47.553 4.268 -2.880 0.297 C14 2Y9 14
2Y9 C15 C15 C 0 1 Y N N N N N 70.688 10.243 47.600 3.885 -0.433 0.295 C15 2Y9 15
2Y9 C16 C16 C 0 1 N N N N N N 67.102 8.980 47.713 5.281 -2.970 -0.846 C16 2Y9 16
2Y9 C17 C17 C 0 1 N N N N N N 68.013 9.243 48.933 5.752 -2.619 0.566 C17 2Y9 17
2Y9 C18 C18 C 0 1 Y N N N N N 71.185 11.390 46.957 3.714 0.392 1.400 C18 2Y9 18
2Y9 C19 C19 C 0 1 Y N N N N N 72.114 12.195 47.629 4.236 1.674 1.370 C19 2Y9 19
2Y9 C20 C20 C 0 1 Y N N N N N 72.543 11.875 48.940 4.914 2.086 0.232 C20 2Y9 20
2Y9 C21 C21 C 0 1 Y N N N N N 71.920 10.779 49.585 5.047 1.213 -0.830 C21 2Y9 21
2Y9 N22 N22 N 0 1 Y N N N N N 71.030 10.005 48.910 4.543 -0.005 -0.771 N22 2Y9 22
2Y9 C23 C23 C 0 1 N N N N N N 73.479 12.848 49.682 5.499 3.473 0.155 C23 2Y9 23
2Y9 C24 C24 C 0 1 N N N N N N 73.205 12.811 51.189 7.012 3.378 -0.051 C24 2Y9 24
2Y9 C25 C25 C 0 1 N N N N N N 74.976 12.982 49.267 4.871 4.227 -1.019 C25 2Y9 25
2Y9 C26 C26 C 0 1 N N R N N N 66.163 2.003 45.575 -5.083 0.010 0.828 C26 2Y9 26
2Y9 C27 C27 C 0 1 N N N N N N 66.176 1.142 44.261 -5.673 -0.550 -0.468 C27 2Y9 27
2Y9 C28 C28 C 0 1 N N N N N N 67.383 1.304 43.264 -4.911 -1.815 -0.869 C28 2Y9 28
2Y9 C29 C29 C 0 1 N N N N N N 68.750 0.751 43.777 -5.138 -2.903 0.183 C29 2Y9 29
2Y9 C30 C30 C 0 1 N N N N N N 67.058 0.659 41.885 -5.417 -2.306 -2.227 C30 2Y9 30
2Y9 C31 C31 C 0 1 N N N N N N 64.762 1.958 46.253 -5.922 1.201 1.296 C31 2Y9 31
2Y9 O32 O32 O 0 1 N N N N N N 64.821 2.560 47.574 -6.008 2.166 0.245 O32 2Y9 32
2Y9 C33 C33 C 0 1 N N N N N N 63.801 2.149 48.527 -6.774 3.324 0.580 C33 2Y9 33
2Y9 C34 C34 C 0 1 N N N N N N 64.315 0.910 49.290 -6.798 4.283 -0.612 C34 2Y9 34
2Y9 H1 H1 H 0 1 N N N N N N 69.748 7.410 43.231 2.163 0.191 -1.375 H1 2Y9 35
2Y9 H2 H2 H 0 1 N N N N N N 68.794 8.932 43.239 0.855 -0.907 -1.878 H2 2Y9 36
2Y9 H3 H3 H 0 1 N N N N N N 67.773 8.228 45.443 1.407 0.024 0.976 H3 2Y9 37
2Y9 H4 H4 H 0 1 N N N N N N 68.712 6.281 46.642 -0.378 -1.566 1.586 H4 2Y9 38
2Y9 H5 H5 H 0 1 N N N N N N 66.696 5.942 45.358 -1.008 0.777 1.143 H5 2Y9 39
2Y9 H6 H6 H 0 1 N N N N N N 66.544 5.344 43.031 -1.442 -0.190 -1.720 H6 2Y9 40
2Y9 H7 H7 H 0 1 N N N N N N 68.325 5.148 42.895 -1.822 1.435 -1.101 H7 2Y9 41
2Y9 H8 H8 H 0 1 N N N N N N 67.706 7.209 42.019 0.310 1.458 -2.137 H8 2Y9 42
2Y9 H10 H10 H 0 1 N N N N N N 65.630 3.966 44.991 -3.521 1.375 0.375 H10 2Y9 43
2Y9 H11 H11 H 0 1 N N N N N N 70.042 4.826 45.195 -1.610 -2.551 -0.208 H11 2Y9 44
2Y9 H12 H12 H 0 1 N N N N N N 68.137 10.922 47.486 3.846 -3.813 0.669 H12 2Y9 45
2Y9 H13 H13 H 0 1 N N N N N N 66.105 9.442 47.662 5.525 -3.962 -1.226 H13 2Y9 46
2Y9 H14 H14 H 0 1 N N N N N N 67.065 7.978 47.261 5.275 -2.171 -1.588 H14 2Y9 47
2Y9 H15 H15 H 0 1 N N N N N N 68.627 8.430 49.348 6.056 -1.589 0.754 H15 2Y9 48
2Y9 H16 H16 H 0 1 N N N N N N 67.667 9.895 49.749 6.305 -3.380 1.116 H16 2Y9 49
2Y9 H17 H17 H 0 1 N N N N N N 70.856 11.647 45.961 3.180 0.038 2.269 H17 2Y9 50
2Y9 H18 H18 H 0 1 N N N N N N 72.509 13.073 47.140 4.118 2.338 2.214 H18 2Y9 51
2Y9 H19 H19 H 0 1 N N N N N N 72.153 10.558 50.616 5.574 1.530 -1.718 H19 2Y9 52
2Y9 H20 H20 H 0 1 N N N N N N 73.072 13.828 49.394 5.291 4.007 1.082 H20 2Y9 53
2Y9 H21 H21 H 0 1 N N N N N N 73.881 13.511 51.702 7.220 2.844 -0.979 H21 2Y9 54
2Y9 H22 H22 H 0 1 N N N N N N 72.162 13.103 51.379 7.435 4.381 -0.107 H22 2Y9 55
2Y9 H23 H23 H 0 1 N N N N N N 73.375 11.792 51.568 7.459 2.841 0.785 H23 2Y9 56
2Y9 H24 H24 H 0 1 N N N N N N 75.471 13.722 49.913 3.793 4.295 -0.873 H24 2Y9 57
2Y9 H25 H25 H 0 1 N N N N N N 75.475 12.008 49.376 5.294 5.230 -1.075 H25 2Y9 58
2Y9 H26 H26 H 0 1 N N N N N N 75.038 13.311 48.219 5.078 3.693 -1.947 H26 2Y9 59
2Y9 H27 H27 H 0 1 N N N N N N 66.921 1.615 46.272 -5.091 -0.764 1.595 H27 2Y9 60
2Y9 H28 H28 H 0 1 N N N N N N 65.260 1.388 43.704 -6.724 -0.793 -0.314 H28 2Y9 61
2Y9 H29 H29 H 0 1 N N N N N N 66.147 0.085 44.566 -5.584 0.194 -1.260 H29 2Y9 62
2Y9 H30 H30 H 0 1 N N N N N N 67.515 2.383 43.094 -3.846 -1.592 -0.937 H30 2Y9 63
2Y9 H31 H31 H 0 1 N N N N N N 68.986 1.203 44.752 -4.596 -3.804 -0.103 H31 2Y9 64
2Y9 H32 H32 H 0 1 N N N N N N 68.686 -0.342 43.885 -4.778 -2.553 1.150 H32 2Y9 65
2Y9 H33 H33 H 0 1 N N N N N N 69.541 1.002 43.055 -6.203 -3.126 0.250 H33 2Y9 66
2Y9 H34 H34 H 0 1 N N N N N N 66.096 1.044 41.517 -6.481 -2.529 -2.160 H34 2Y9 67
2Y9 H35 H35 H 0 1 N N N N N N 67.852 0.910 41.167 -5.255 -1.531 -2.977 H35 2Y9 68
2Y9 H36 H36 H 0 1 N N N N N N 66.997 -0.434 41.997 -4.874 -3.207 -2.513 H36 2Y9 69
2Y9 H37 H37 H 0 1 N N N N N N 64.041 2.512 45.634 -6.923 0.860 1.559 H37 2Y9 70
2Y9 H38 H38 H 0 1 N N N N N N 64.437 0.911 46.346 -5.452 1.656 2.168 H38 2Y9 71
2Y9 H39 H39 H 0 1 N N N N N N 63.605 2.967 49.236 -7.793 3.027 0.828 H39 2Y9 72
2Y9 H40 H40 H 0 1 N N N N N N 62.873 1.897 47.992 -6.322 3.823 1.438 H40 2Y9 73
2Y9 H41 H41 H 0 1 N N N N N N 63.555 0.585 50.016 -5.779 4.580 -0.860 H41 2Y9 74
2Y9 H42 H42 H 0 1 N N N N N N 64.512 0.096 48.577 -7.250 3.784 -1.470 H42 2Y9 75
2Y9 H43 H43 H 0 1 N N N N N N 65.244 1.166 49.821 -7.382 5.167 -0.356 H43 2Y9 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2Y9 C30 C28 SING N N 1
2Y9 N6 C5 SING N N 2
2Y9 N6 C1 SING N N 3
2Y9 C28 C29 SING N N 4
2Y9 C28 C27 SING N N 5
2Y9 C5 C4 SING N N 6
2Y9 C1 C2 SING N N 7
2Y9 C27 C26 SING N N 8
2Y9 C4 C8 SING N N 9
2Y9 C4 C3 SING N N 10
2Y9 C2 C3 SING N N 11
2Y9 C2 C7 SING N N 12
2Y9 O13 C3 SING N N 13
2Y9 N12 C8 SING N N 14
2Y9 N12 C26 SING N N 15
2Y9 C8 O9 DOUB N N 16
2Y9 O11 C7 DOUB N N 17
2Y9 C26 C31 SING N N 18
2Y9 C7 N10 SING N N 19
2Y9 C31 O32 SING N N 20
2Y9 C18 C15 DOUB Y N 21
2Y9 C18 C19 SING Y N 22
2Y9 N10 C14 SING N N 23
2Y9 N10 C15 SING N N 24
2Y9 C14 C16 SING N N 25
2Y9 C14 C17 SING N N 26
2Y9 O32 C33 SING N N 27
2Y9 C15 N22 SING Y N 28
2Y9 C19 C20 DOUB Y N 29
2Y9 C16 C17 SING N N 30
2Y9 C33 C34 SING N N 31
2Y9 N22 C21 DOUB Y N 32
2Y9 C20 C21 SING Y N 33
2Y9 C20 C23 SING N N 34
2Y9 C25 C23 SING N N 35
2Y9 C23 C24 SING N N 36
2Y9 C1 H1 SING N N 37
2Y9 C1 H2 SING N N 38
2Y9 C2 H3 SING N N 39
2Y9 C3 H4 SING N N 40
2Y9 C4 H5 SING N N 41
2Y9 C5 H6 SING N N 42
2Y9 C5 H7 SING N N 43
2Y9 N6 H8 SING N N 44
2Y9 N12 H10 SING N N 45
2Y9 O13 H11 SING N N 46
2Y9 C14 H12 SING N N 47
2Y9 C16 H13 SING N N 48
2Y9 C16 H14 SING N N 49
2Y9 C17 H15 SING N N 50
2Y9 C17 H16 SING N N 51
2Y9 C18 H17 SING N N 52
2Y9 C19 H18 SING N N 53
2Y9 C21 H19 SING N N 54
2Y9 C23 H20 SING N N 55
2Y9 C24 H21 SING N N 56
2Y9 C24 H22 SING N N 57
2Y9 C24 H23 SING N N 58
2Y9 C25 H24 SING N N 59
2Y9 C25 H25 SING N N 60
2Y9 C25 H26 SING N N 61
2Y9 C26 H27 SING N N 62
2Y9 C27 H28 SING N N 63
2Y9 C27 H29 SING N N 64
2Y9 C28 H30 SING N N 65
2Y9 C29 H31 SING N N 66
2Y9 C29 H32 SING N N 67
2Y9 C29 H33 SING N N 68
2Y9 C30 H34 SING N N 69
2Y9 C30 H35 SING N N 70
2Y9 C30 H36 SING N N 71
2Y9 C31 H37 SING N N 72
2Y9 C31 H38 SING N N 73
2Y9 C33 H39 SING N N 74
2Y9 C33 H40 SING N N 75
2Y9 C34 H41 SING N N 76
2Y9 C34 H42 SING N N 77
2Y9 C34 H43 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2Y9 SMILES ACDLabs 12.01 O=C(N(c1ncc(cc1)C(C)C)C2CC2)C3C(O)C(C(=O)NC(CC(C)C)COCC)CNC3
2Y9 InChI InChI 1.03 InChI=1S/C26H42N4O4/c1-6-34-15-19(11-16(2)3)29-25(32)21-13-27-14-22(24(21)31)26(33)30(20-8-9-20)23-10-7-18(12-28-23)17(4)5/h7,10,12,16-17,19-22,24,27,31H,6,8-9,11,13-15H2,1-5H3,(H,29,32)/t19-,21-,22+,24-/m1/s1
2Y9 InChIKey InChI 1.03 YOVGCKBDPOHLAV-CNIHBODFSA-N
2Y9 SMILES_CANONICAL CACTVS 3.385 CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@@H]([C@@H]1O)C(=O)N(C2CC2)c3ccc(cn3)C(C)C
2Y9 SMILES CACTVS 3.385 CCOC[CH](CC(C)C)NC(=O)[CH]1CNC[CH]([CH]1O)C(=O)N(C2CC2)c3ccc(cn3)C(C)C
2Y9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@@H]([C@@H]1O)C(=O)N(c2ccc(cn2)C(C)C)C3CC3
2Y9 SMILES "OpenEye OEToolkits" 1.7.6 CCOCC(CC(C)C)NC(=O)C1CNCC(C1O)C(=O)N(c2ccc(cn2)C(C)C)C3CC3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2Y9 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,4R,5R)-N-cyclopropyl-N'-[(2R)-1-ethoxy-4-methylpentan-2-yl]-4-hydroxy-N-[5-(propan-2-yl)pyridin-2-yl]piperidine-3,5-dicarboxamide"
2Y9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (3S,4R,5R)-N3-cyclopropyl-N5-[(2R)-1-ethoxy-4-methyl-pentan-2-yl]-4-oxidanyl-N3-(5-propan-2-ylpyridin-2-yl)piperidine-3,5-dicarboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2Y9 'Create component' 2014-04-11 RCSB
2Y9 'Initial release' 2014-08-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2Y9 C1 C 13.392 1.226 1
2Y9 C2 C 12.093 1.976 2
2Y9 C3 C 10.794 1.226 3
2Y9 C4 C 10.794 -0.275 4
2Y9 C5 C 12.093 -1.024 5
2Y9 N6 N 13.392 -0.275 6
2Y9 C7 C 12.093 3.475 7
2Y9 C8 C 9.495 -1.024 8
2Y9 O9 O 8.196 -0.275 9
2Y9 N10 N 13.392 4.226 10
2Y9 O11 O 10.794 4.226 11
2Y9 N12 N 9.495 -2.525 12
2Y9 O13 O 9.495 1.976 13
2Y9 C14 C 13.392 5.726 14
2Y9 C15 C 14.691 3.475 15
2Y9 C16 C 14.142 7.024 16
2Y9 C17 C 12.642 7.024 17
2Y9 C18 C 15.990 4.226 18
2Y9 C19 C 17.290 3.475 19
2Y9 C20 C 17.290 1.976 20
2Y9 C21 C 15.990 1.226 21
2Y9 N22 N 14.691 1.976 22
2Y9 C23 C 18.588 1.226 23
2Y9 C24 C 18.588 -0.275 24
2Y9 C25 C 19.887 1.976 25
2Y9 C26 C 8.196 -3.275 26
2Y9 C27 C 8.196 -4.774 27
2Y9 C28 C 6.897 -5.524 28
2Y9 C29 C 5.598 -4.774 29
2Y9 C30 C 6.897 -7.024 30
2Y9 C31 C 6.897 -2.525 31
2Y9 O32 O 5.598 -3.275 32
2Y9 C33 C 4.299 -2.525 33
2Y9 C34 C 3.000 -3.275 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2Y9 C30 C28 SINGLE NONE 1
2Y9 N6 C5 SINGLE NONE 2
2Y9 N6 C1 SINGLE NONE 3
2Y9 C28 C29 SINGLE NONE 4
2Y9 C28 C27 SINGLE NONE 5
2Y9 C5 C4 SINGLE NONE 6
2Y9 C1 C2 SINGLE NONE 7
2Y9 C26 C27 SINGLE BEGINDASH 8
2Y9 C4 C8 SINGLE BEGINWEDGE 9
2Y9 C4 C3 SINGLE NONE 10
2Y9 C2 C3 SINGLE NONE 11
2Y9 C2 C7 SINGLE BEGINWEDGE 12
2Y9 C3 O13 SINGLE BEGINWEDGE 13
2Y9 N12 C8 SINGLE NONE 14
2Y9 N12 C26 SINGLE NONE 15
2Y9 C8 O9 DOUBLE NONE 16
2Y9 O11 C7 DOUBLE NONE 17
2Y9 C26 C31 SINGLE NONE 18
2Y9 C7 N10 SINGLE NONE 19
2Y9 C31 O32 SINGLE NONE 20
2Y9 C18 C15 DOUBLE NONE 21
2Y9 C18 C19 SINGLE NONE 22
2Y9 N10 C14 SINGLE NONE 23
2Y9 N10 C15 SINGLE NONE 24
2Y9 C14 C16 SINGLE NONE 25
2Y9 C14 C17 SINGLE NONE 26
2Y9 O32 C33 SINGLE NONE 27
2Y9 C15 N22 SINGLE NONE 28
2Y9 C19 C20 DOUBLE NONE 29
2Y9 C16 C17 SINGLE NONE 30
2Y9 C33 C34 SINGLE NONE 31
2Y9 N22 C21 DOUBLE NONE 32
2Y9 C20 C21 SINGLE NONE 33
2Y9 C20 C23 SINGLE NONE 34
2Y9 C25 C23 SINGLE NONE 35
2Y9 C23 C24 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2Y9 MurckoScaffold S1 scaffold 'O=C([C@@H]1CCCNC1)N(c1ccccn1)C1CC1' InChI=1S/C14H19N3O/c18-14(11-4-3-8-15-10-11)17(12-6-7-12)13-5-1-2-9-16-13/h1-2,5,9,11-12,15H,3-4,6-8,10H2/t11-/m1/s1 ZQFJAPIKWLWMHD-LLVKDONJSA-N
2Y9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2Y9 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
2Y9 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2Y9 C1 S1 1
2Y9 C2 S1 1
2Y9 C3 S1 1
2Y9 C4 S1 1
2Y9 C5 S1 1
2Y9 N6 S1 1
2Y9 C7 S1 1
2Y9 N10 S1 1
2Y9 O11 S1 1
2Y9 C14 S1 1
2Y9 C15 S1 1
2Y9 C16 S1 1
2Y9 C17 S1 1
2Y9 C18 S1 1
2Y9 C19 S1 1
2Y9 C20 S1 1
2Y9 C21 S1 1
2Y9 N22 S1 1
2Y9 N10 F1 1
2Y9 C7 F1 1
2Y9 O11 F1 1
2Y9 C2 F1 1
2Y9 N12 F1 2
2Y9 C8 F1 2
2Y9 O9 F1 2
2Y9 C4 F1 2
2Y9 C14 F2 1
2Y9 C16 F2 1
2Y9 C17 F2 1
2Y9 C15 F3 1
2Y9 C18 F3 1
2Y9 C19 F3 1
2Y9 C20 F3 1
2Y9 C21 F3 1
2Y9 N22 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2Y9
_pdbe_chem_comp_rdkit_properties.exactmw 474.321
_pdbe_chem_comp_rdkit_properties.amw 474.646
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.731
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 262.605
_pdbe_chem_comp_rdkit_properties.tpsa 103.790
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.029
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.479
_pdbe_chem_comp_rdkit_properties.chi0v 16.422
_pdbe_chem_comp_rdkit_properties.chi1v 8.533
_pdbe_chem_comp_rdkit_properties.chi2v 3.571
_pdbe_chem_comp_rdkit_properties.chi3v 3.571
_pdbe_chem_comp_rdkit_properties.chi4v 2.145
_pdbe_chem_comp_rdkit_properties.chi0n 58.422
_pdbe_chem_comp_rdkit_properties.chi1n 29.336
_pdbe_chem_comp_rdkit_properties.chi2n 3.571
_pdbe_chem_comp_rdkit_properties.chi3n 3.571
_pdbe_chem_comp_rdkit_properties.chi4n 2.145
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.030
_pdbe_chem_comp_rdkit_properties.kappa1 5.313
_pdbe_chem_comp_rdkit_properties.kappa2 12.089
_pdbe_chem_comp_rdkit_properties.kappa3 6.766
_pdbe_chem_comp_rdkit_properties.Phi 1.889
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2Y9 UniChem ChEMBL CHEMBL3318957
2Y9 UniChem PDBe 2Y9
2Y9 UniChem ZINC ZINC000098208350
2Y9 UniChem SureChEMBL SCHEMBL7865218
2Y9 UniChem 'PubChem TPHARMA' 56470905
2Y9 UniChem PubChem 25143506
2Y9 UniChem BindingDb 98678
2Y9 UniChem 'Probes And Drugs' PD085819
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2Y9 C1 1.553 1.382 -0.867 ETKDGv3 1
2Y9 C2 1.115 0.561 0.366 ETKDGv3 2
2Y9 C3 -0.319 0.024 0.180 ETKDGv3 3
2Y9 C4 -1.269 1.194 -0.153 ETKDGv3 4
2Y9 C5 -0.743 1.989 -1.369 ETKDGv3 5
2Y9 N6 0.620 2.487 -1.132 ETKDGv3 6
2Y9 C7 2.082 -0.551 0.703 ETKDGv3 7
2Y9 C8 -2.678 0.698 -0.366 ETKDGv3 8
2Y9 O9 -3.070 0.381 -1.523 ETKDGv3 9
2Y9 N10 2.967 -1.108 -0.281 ETKDGv3 10
2Y9 O11 2.116 -0.999 1.881 ETKDGv3 11
2Y9 N12 -3.545 0.517 0.763 ETKDGv3 12
2Y9 O13 -0.345 -0.934 -0.851 ETKDGv3 13
2Y9 C14 2.441 -2.085 -1.242 ETKDGv3 14
2Y9 C15 4.302 -0.566 -0.391 ETKDGv3 15
2Y9 C16 3.168 -3.422 -1.216 ETKDGv3 16
2Y9 C17 1.781 -3.304 -0.610 ETKDGv3 17
2Y9 C18 5.040 -0.721 -1.507 ETKDGv3 18
2Y9 C19 6.390 -0.133 -1.580 ETKDGv3 19
2Y9 C20 6.885 0.563 -0.543 ETKDGv3 20
2Y9 C21 6.037 0.719 0.665 ETKDGv3 21
2Y9 N22 4.850 0.188 0.707 ETKDGv3 22
2Y9 C23 8.270 1.175 -0.609 ETKDGv3 23
2Y9 C24 9.181 0.586 0.473 ETKDGv3 24
2Y9 C25 8.198 2.702 -0.495 ETKDGv3 25
2Y9 C26 -4.852 -0.136 0.655 ETKDGv3 26
2Y9 C27 -5.851 0.493 1.652 ETKDGv3 27
2Y9 C28 -6.035 2.020 1.475 ETKDGv3 28
2Y9 C29 -6.660 2.373 0.117 ETKDGv3 29
2Y9 C30 -6.907 2.575 2.609 ETKDGv3 30
2Y9 C31 -4.682 -1.643 0.917 ETKDGv3 31
2Y9 O32 -5.910 -2.329 0.747 ETKDGv3 32
2Y9 C33 -6.055 -2.811 -0.576 ETKDGv3 33
2Y9 C34 -5.561 -4.250 -0.673 ETKDGv3 34
2Y9 H1 1.622 0.735 -1.768 ETKDGv3 35
2Y9 H2 2.564 1.807 -0.685 ETKDGv3 36
2Y9 H3 1.108 1.255 1.237 ETKDGv3 37
2Y9 H4 -0.643 -0.439 1.144 ETKDGv3 38
2Y9 H5 -1.286 1.888 0.717 ETKDGv3 39
2Y9 H6 -1.413 2.856 -1.558 ETKDGv3 40
2Y9 H7 -0.751 1.358 -2.285 ETKDGv3 41
2Y9 H8 0.610 3.132 -0.306 ETKDGv3 42
2Y9 H10 -3.159 0.698 1.718 ETKDGv3 43
2Y9 H11 -1.062 -1.584 -0.629 ETKDGv3 44
2Y9 H12 2.057 -1.731 -2.222 ETKDGv3 45
2Y9 H13 3.981 -3.514 -0.465 ETKDGv3 46
2Y9 H14 3.192 -3.948 -2.194 ETKDGv3 47
2Y9 H15 0.981 -3.765 -1.227 ETKDGv3 48
2Y9 H16 1.779 -3.348 0.499 ETKDGv3 49
2Y9 H17 4.662 -1.256 -2.368 ETKDGv3 50
2Y9 H18 6.969 -0.271 -2.485 ETKDGv3 51
2Y9 H19 6.397 1.275 1.520 ETKDGv3 52
2Y9 H20 8.739 0.943 -1.592 ETKDGv3 53
2Y9 H21 8.815 0.844 1.490 ETKDGv3 54
2Y9 H22 10.213 0.981 0.359 ETKDGv3 55
2Y9 H23 9.220 -0.521 0.376 ETKDGv3 56
2Y9 H24 7.808 3.012 0.498 ETKDGv3 57
2Y9 H25 9.209 3.142 -0.629 ETKDGv3 58
2Y9 H26 7.534 3.112 -1.286 ETKDGv3 59
2Y9 H27 -5.255 -0.010 -0.372 ETKDGv3 60
2Y9 H28 -6.840 -0.006 1.546 ETKDGv3 61
2Y9 H29 -5.491 0.292 2.686 ETKDGv3 62
2Y9 H30 -5.045 2.520 1.544 ETKDGv3 63
2Y9 H31 -6.879 3.461 0.064 ETKDGv3 64
2Y9 H32 -5.957 2.141 -0.709 ETKDGv3 65
2Y9 H33 -7.606 1.811 -0.039 ETKDGv3 66
2Y9 H34 -7.920 2.116 2.585 ETKDGv3 67
2Y9 H35 -6.440 2.361 3.594 ETKDGv3 68
2Y9 H36 -7.010 3.677 2.513 ETKDGv3 69
2Y9 H37 -3.864 -2.055 0.279 ETKDGv3 70
2Y9 H38 -4.347 -1.791 1.966 ETKDGv3 71
2Y9 H39 -5.545 -2.179 -1.340 ETKDGv3 72
2Y9 H40 -7.136 -2.798 -0.829 ETKDGv3 73
2Y9 H41 -4.473 -4.301 -0.459 ETKDGv3 74
2Y9 H42 -6.106 -4.888 0.055 ETKDGv3 75
2Y9 H43 -5.742 -4.639 -1.697 ETKDGv3 76
#