data_329
#
_chem_comp.id 329
_chem_comp.name (2S)-2-methyl-2,3-dihydrothieno[2,3-f][1,4]oxazepin-5-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H10 N2 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-09-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 182.243
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 329
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3EBD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
329 C1 C1 C 0 1 Y N N N N N 127.089 112.415 32.727 0.633 1.962 0.495 C1 329 1
329 C2 C2 C 0 1 Y N N N N N 126.038 113.341 33.148 -0.031 0.751 0.588 C2 329 2
329 O1 O1 O 0 1 N N N N N N 125.817 113.533 34.513 -1.289 0.550 1.085 O1 329 3
329 C3 C3 C 0 1 N N S N N N 124.491 113.682 35.105 -2.304 0.210 0.145 C3 329 4
329 C4 C4 C 0 1 N N N N N N 124.449 114.977 35.974 -2.757 1.475 -0.587 C4 329 5
329 N1 N1 N 0 1 N N N N N N 123.288 114.856 33.120 -1.016 -1.892 -0.273 N1 329 6
329 C5 C5 C 0 1 N N N N N N 124.270 114.895 32.223 0.228 -1.676 0.108 C5 329 7
329 N2 N2 N 0 1 N N N N N N 124.277 115.879 31.336 1.043 -2.716 0.510 N2 329 8
329 C6 C6 C 0 1 Y N N N N N 125.371 113.934 32.116 0.716 -0.289 0.087 C6 329 9
329 S1 S1 S 0 1 Y N N N N N 125.982 113.418 30.562 2.242 0.314 -0.521 S1 329 10
329 C7 C7 C 0 1 Y N N N N N 127.167 112.358 31.396 1.843 1.911 -0.068 C7 329 11
329 C8 C8 C 0 1 N N N N N N 123.267 113.765 34.108 -1.776 -0.801 -0.874 C8 329 12
329 H1 H1 H 0 1 N N N N N N 127.717 111.853 33.402 0.201 2.886 0.848 H1 329 13
329 H3 H3 H 0 1 N N N N N N 124.363 112.751 35.677 -3.153 -0.223 0.674 H3 329 14
329 H4 H4 H 0 1 N N N N N N 124.439 114.704 37.040 -1.908 1.917 -1.109 H4 329 15
329 H4A H4A H 0 1 N N N N N N 125.337 115.590 35.761 -3.534 1.219 -1.308 H4A 329 16
329 H4B H4B H 0 1 N N N N N N 123.541 115.550 35.734 -3.152 2.191 0.134 H4B 329 17
329 HN2 HN2 H 0 1 N N N N N N 125.063 115.792 30.724 0.703 -3.625 0.516 HN2 329 18
329 HN2A HN2A H 0 0 N N N N N N 123.593 116.606 31.286 1.956 -2.538 0.786 HN2A 329 19
329 H7 H7 H 0 1 N N N N N N 127.875 111.734 30.871 2.484 2.767 -0.217 H7 329 20
329 H8 H8 H 0 1 N N N N N N 123.243 112.820 33.546 -2.622 -1.222 -1.418 H8 329 21
329 H8A H8A H 0 1 N N N N N N 122.388 113.960 34.740 -1.135 -0.279 -1.584 H8A 329 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
329 C1 C2 SING Y N 1
329 C1 C7 DOUB Y N 2
329 C2 O1 SING N N 3
329 C2 C6 DOUB Y N 4
329 O1 C3 SING N N 5
329 C3 C4 SING N N 6
329 C3 C8 SING N N 7
329 N1 C5 DOUB N N 8
329 N1 C8 SING N N 9
329 C5 N2 SING N N 10
329 C5 C6 SING N N 11
329 C6 S1 SING Y N 12
329 S1 C7 SING Y N 13
329 C1 H1 SING N N 14
329 C3 H3 SING N N 15
329 C4 H4 SING N N 16
329 C4 H4A SING N N 17
329 C4 H4B SING N N 18
329 N2 HN2 SING N N 19
329 N2 HN2A SING N N 20
329 C7 H7 SING N N 21
329 C8 H8 SING N N 22
329 C8 H8A SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
329 SMILES ACDLabs 10.04 N1=C(N)c2sccc2OC(C1)C
329 SMILES_CANONICAL CACTVS 3.341 C[C@H]1CN=C(N)c2sccc2O1
329 SMILES CACTVS 3.341 C[CH]1CN=C(N)c2sccc2O1
329 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]1CN=C(c2c(ccs2)O1)N
329 SMILES "OpenEye OEToolkits" 1.5.0 CC1CN=C(c2c(ccs2)O1)N
329 InChI InChI 1.03 InChI=1S/C8H10N2OS/c1-5-4-10-8(9)7-6(11-5)2-3-12-7/h2-3,5H,4H2,1H3,(H2,9,10)/t5-/m0/s1
329 InChIKey InChI 1.03 TUOXPJFCQDMQOX-YFKPBYRVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
329 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-methyl-2,3-dihydrothieno[2,3-f][1,4]oxazepin-5-amine
329 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-methyl-2,3-dihydrothieno[2,3-f][1,4]oxazepin-5-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
329 'Create component' 2008-09-26 RCSB
329 'Modify aromatic_flag' 2011-06-04 RCSB
329 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 329
_pdbe_chem_comp_drugbank_details.drugbank_id DB07003
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '(2S)-2-methyl-2,3-dihydrothieno[2,3-f][1,4]oxazepin-5-amine'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 329
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07003
_pdbe_chem_comp_drugbank_classification.parent 'Alkyl aryl ethers'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as alkyl aryl ethers. These are organic compounds containing the alkyl aryl ether functional group with the generic formula R-O-R' , where R is an alkyl group and R' is an aryl group."
#
_pdbe_chem_comp_drugbank_targets.comp_id 329
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07003
_pdbe_chem_comp_drugbank_targets.name 'Nitric oxide synthase, inducible'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P35228
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
329 C1 C 7.983 1.815 1
329 C2 C 6.561 1.365 2
329 O1 O 5.393 2.306 3
329 C3 C 3.929 1.980 4
329 C4 C 3.000 3.157 5
329 N1 N 3.916 -0.723 6
329 C5 C 5.377 -1.064 7
329 N2 N 5.703 -2.528 8
329 C6 C 6.554 -0.135 9
329 S1 S 7.971 -0.599 10
329 C7 C 8.852 0.604 11
329 C8 C 3.272 0.632 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
329 C1 C2 SINGLE NONE 1
329 C1 C7 DOUBLE NONE 2
329 C2 O1 SINGLE NONE 3
329 C2 C6 DOUBLE NONE 4
329 O1 C3 SINGLE NONE 5
329 C3 C4 SINGLE BEGINDASH 6
329 C3 C8 SINGLE NONE 7
329 N1 C5 DOUBLE NONE 8
329 N1 C8 SINGLE NONE 9
329 C5 N2 SINGLE NONE 10
329 C5 C6 SINGLE NONE 11
329 C6 S1 SINGLE NONE 12
329 S1 C7 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
329 MurckoScaffold S1 scaffold C1=NCCOc2ccsc21 InChI=1S/C7H7NOS/c1-4-10-7-5-8-2-3-9-6(1)7/h1,4-5H,2-3H2 CFJAIPPMCCVMCE-UHFFFAOYSA-N
329 thiophen F1 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
329 C1 S1 1
329 C2 S1 1
329 O1 S1 1
329 C3 S1 1
329 N1 S1 1
329 C5 S1 1
329 C6 S1 1
329 S1 S1 1
329 C7 S1 1
329 C8 S1 1
329 C6 F1 1
329 C2 F1 1
329 C1 F1 1
329 C7 F1 1
329 S1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 329
_pdbe_chem_comp_rdkit_properties.exactmw 182.051
_pdbe_chem_comp_rdkit_properties.amw 182.248
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.040
_pdbe_chem_comp_rdkit_properties.tpsa 47.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.717
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.124
_pdbe_chem_comp_rdkit_properties.chi0v 6.527
_pdbe_chem_comp_rdkit_properties.chi1v 3.804
_pdbe_chem_comp_rdkit_properties.chi2v 1.971
_pdbe_chem_comp_rdkit_properties.chi3v 1.971
_pdbe_chem_comp_rdkit_properties.chi4v 1.293
_pdbe_chem_comp_rdkit_properties.chi0n 15.711
_pdbe_chem_comp_rdkit_properties.chi1n 7.882
_pdbe_chem_comp_rdkit_properties.chi2n 1.194
_pdbe_chem_comp_rdkit_properties.chi3n 1.194
_pdbe_chem_comp_rdkit_properties.chi4n 0.724
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.030
_pdbe_chem_comp_rdkit_properties.kappa1 2.259
_pdbe_chem_comp_rdkit_properties.kappa2 2.786
_pdbe_chem_comp_rdkit_properties.kappa3 1.180
_pdbe_chem_comp_rdkit_properties.Phi 0.524
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
329 UniChem ChEMBL CHEMBL1221702
329 UniChem DrugBank DB07003
329 UniChem PDBe 329
329 UniChem ZINC ZINC000000026310
329 UniChem SureChEMBL SCHEMBL8194872
329 UniChem BindingDb 36401
329 UniChem 'Probes And Drugs' PD005701
329 UniChem PubChem 24894153
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
329 C1 -1.571 2.227 0.096 ETKDGv3 1
329 C2 -0.742 0.998 0.097 ETKDGv3 2
329 O1 0.603 1.080 -0.288 ETKDGv3 3
329 C3 1.495 -0.018 -0.437 ETKDGv3 4
329 C4 2.897 0.529 -0.698 ETKDGv3 5
329 N1 0.353 -1.812 0.768 ETKDGv3 6
329 C5 -0.904 -1.512 0.619 ETKDGv3 7
329 N2 -1.851 -2.584 0.613 ETKDGv3 8
329 C6 -1.400 -0.114 0.487 ETKDGv3 9
329 S1 -3.088 0.341 0.845 ETKDGv3 10
329 C7 -2.835 2.051 0.464 ETKDGv3 11
329 C8 1.471 -0.882 0.826 ETKDGv3 12
329 H1 -1.181 3.196 -0.187 ETKDGv3 13
329 H3 1.190 -0.623 -1.320 ETKDGv3 14
329 H4 3.611 -0.304 -0.875 ETKDGv3 15
329 H4A 3.246 1.131 0.169 ETKDGv3 16
329 H4B 2.886 1.176 -1.601 ETKDGv3 17
329 HN2 -1.530 -3.570 0.740 ETKDGv3 18
329 HN2A -2.867 -2.416 0.447 ETKDGv3 19
329 H7 -3.580 2.834 0.518 ETKDGv3 20
329 H8 2.405 -1.480 0.904 ETKDGv3 21
329 H8A 1.393 -0.249 1.736 ETKDGv3 22
#