data_33E
#
_chem_comp.id 33E
_chem_comp.name 4-iodo-3-nitrobenzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H5 I N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Iniparib
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-06-06
_chem_comp.pdbx_modified_date 2022-10-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 292.031
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 33E
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4TKI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
33E OAC O1 O 0 1 N N N N N N 23.139 49.821 -1.172 0.312 -3.119 0.001 OAC 33E 1
33E NAM N1 N 1 1 N N N N N N 23.069 48.541 -1.571 -0.252 -2.040 0.000 NAM 33E 2
33E OAD O2 O -1 1 N N N N N N 22.121 48.273 -2.487 -1.469 -1.989 0.003 OAD 33E 3
33E CAL C1 C 0 1 Y N N N N N 23.897 47.609 -1.046 0.541 -0.790 0.002 CAL 33E 4
33E CAH C2 C 0 1 Y N N N N N 23.611 46.235 -1.176 1.918 -0.849 -0.001 CAH 33E 5
33E CAJ C3 C 0 1 Y N N N N N 25.072 48.005 -0.369 -0.102 0.436 0.002 CAJ 33E 6
33E IAE I1 I 0 1 N N N N N N 25.591 50.036 -0.051 -2.196 0.516 -0.001 IAE 33E 7
33E CAF C4 C 0 1 Y N N N N N 25.930 47.058 0.196 0.632 1.609 0.004 CAF 33E 8
33E CAG C5 C 0 1 Y N N N N N 25.661 45.699 0.056 2.011 1.563 0.006 CAG 33E 9
33E CAK C6 C 0 1 Y N N N N N 24.511 45.290 -0.627 2.665 0.330 0.001 CAK 33E 10
33E CAI C7 C 0 1 N N N N N N 24.271 43.783 -0.724 4.142 0.274 -0.002 CAI 33E 11
33E OAB O3 O 0 1 N N N N N N 23.673 43.274 -1.678 4.709 -0.801 -0.005 OAB 33E 12
33E NAA N2 N 0 1 N N N N N N 24.794 43.098 0.288 4.860 1.415 0.000 NAA 33E 13
33E H1 H1 H 0 1 N N N N N N 22.718 45.908 -1.687 2.419 -1.806 -0.004 H1 33E 14
33E H2 H2 H 0 1 N N N N N N 26.804 47.381 0.743 0.124 2.563 0.003 H2 33E 15
33E H3 H3 H 0 1 N N N N N N 26.336 44.966 0.472 2.583 2.480 0.007 H3 33E 16
33E H4 H4 H 0 1 N N N N N N 24.716 42.101 0.310 4.407 2.273 0.004 H4 33E 17
33E H5 H5 H 0 1 N N N N N N 25.265 43.579 1.027 5.829 1.378 -0.001 H5 33E 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
33E OAD NAM SING N N 1
33E OAB CAI DOUB N N 2
33E NAM OAC DOUB N N 3
33E NAM CAL SING N N 4
33E CAH CAL DOUB Y N 5
33E CAH CAK SING Y N 6
33E CAL CAJ SING Y N 7
33E CAI CAK SING N N 8
33E CAI NAA SING N N 9
33E CAK CAG DOUB Y N 10
33E CAJ IAE SING N N 11
33E CAJ CAF DOUB Y N 12
33E CAG CAF SING Y N 13
33E CAH H1 SING N N 14
33E CAF H2 SING N N 15
33E CAG H3 SING N N 16
33E NAA H4 SING N N 17
33E NAA H5 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
33E SMILES ACDLabs 12.01 Ic1ccc(cc1[N+](=O)[O-])C(=O)N
33E InChI InChI 1.03 InChI=1S/C7H5IN2O3/c8-5-2-1-4(7(9)11)3-6(5)10(12)13/h1-3H,(H2,9,11)
33E InChIKey InChI 1.03 MDOJTZQKHMAPBK-UHFFFAOYSA-N
33E SMILES_CANONICAL CACTVS 3.385 NC(=O)c1ccc(I)c(c1)[N+]([O-])=O
33E SMILES CACTVS 3.385 NC(=O)c1ccc(I)c(c1)[N+]([O-])=O
33E SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1cc(c(cc1C(=O)N)[N+](=O)[O-])I
33E SMILES "OpenEye OEToolkits" 1.9.2 c1cc(c(cc1C(=O)N)[N+](=O)[O-])I
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
33E "SYSTEMATIC NAME" ACDLabs 12.01 4-iodo-3-nitrobenzamide
33E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 4-iodanyl-3-nitro-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
33E 'Create component' 2014-06-06 RCSB
33E 'Modify descriptor' 2014-09-05 RCSB
33E 'Initial release' 2014-10-15 RCSB
33E 'Modify synonyms' 2022-10-05 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 33E
_pdbx_chem_comp_synonyms.name Iniparib
_pdbx_chem_comp_synonyms.provenance DRUGBANK
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 33E
_pdbe_chem_comp_drugbank_details.drugbank_id DB13877
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Iniparib
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 160003-66-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
33E Iniparib wwPDB ?
33E 4-iodo-3-nitrobenzamide DrugBank ?
33E Iniparib DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 33E
_pdbe_chem_comp_drugbank_classification.drugbank_id DB13877
_pdbe_chem_comp_drugbank_classification.parent '4-halobenzoic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 4-halobenzoic acids and derivatives. These are benzoic acids or derivatives carrying a halogen atom at the 4-position of the benzene ring.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 33E
_pdbe_chem_comp_drugbank_targets.drugbank_id DB13877
_pdbe_chem_comp_drugbank_targets.name 'Poly [ADP-ribose] polymerase 1'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P09874
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
33E OAC O 4.299 3.607 1
33E NAM N 5.598 2.857 2
33E OAD O 6.897 3.607 3
33E CAL C 5.598 1.357 4
33E CAH C 6.897 0.608 5
33E CAJ C 4.299 0.608 6
33E IAE I 3.000 1.357 7
33E CAF C 4.299 -0.892 8
33E CAG C 5.598 -1.643 9
33E CAK C 6.897 -0.892 10
33E CAI C 8.196 -1.643 11
33E OAB O 9.495 -0.892 12
33E NAA N 8.196 -3.143 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
33E OAD NAM SINGLE NONE 1
33E OAB CAI DOUBLE NONE 2
33E NAM OAC DOUBLE NONE 3
33E NAM CAL SINGLE NONE 4
33E CAH CAL DOUBLE NONE 5
33E CAH CAK SINGLE NONE 6
33E CAL CAJ SINGLE NONE 7
33E CAI CAK SINGLE NONE 8
33E CAI NAA SINGLE NONE 9
33E CAK CAG DOUBLE NONE 10
33E CAJ IAE SINGLE NONE 11
33E CAJ CAF DOUBLE NONE 12
33E CAG CAF SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
33E MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
33E amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
33E phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
33E CAL S1 1
33E CAH S1 1
33E CAJ S1 1
33E CAF S1 1
33E CAG S1 1
33E CAK S1 1
33E NAA F1 1
33E CAI F1 1
33E OAB F1 1
33E CAK F1 1
33E CAL F2 1
33E CAH F2 1
33E CAK F2 1
33E CAG F2 1
33E CAF F2 1
33E CAJ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 33E
_pdbe_chem_comp_rdkit_properties.exactmw 291.934
_pdbe_chem_comp_rdkit_properties.amw 292.032
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.354
_pdbe_chem_comp_rdkit_properties.tpsa 86.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.863
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.241
_pdbe_chem_comp_rdkit_properties.chi0v 8.155
_pdbe_chem_comp_rdkit_properties.chi1v 4.034
_pdbe_chem_comp_rdkit_properties.chi2v 1.926
_pdbe_chem_comp_rdkit_properties.chi3v 1.926
_pdbe_chem_comp_rdkit_properties.chi4v 1.080
_pdbe_chem_comp_rdkit_properties.chi0n 10.997
_pdbe_chem_comp_rdkit_properties.chi1n 5.350
_pdbe_chem_comp_rdkit_properties.chi2n 1.145
_pdbe_chem_comp_rdkit_properties.chi3n 1.145
_pdbe_chem_comp_rdkit_properties.chi4n 0.614
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.180
_pdbe_chem_comp_rdkit_properties.kappa1 4.891
_pdbe_chem_comp_rdkit_properties.kappa2 3.688
_pdbe_chem_comp_rdkit_properties.kappa3 2.143
_pdbe_chem_comp_rdkit_properties.Phi 1.388
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
33E UniChem ChEMBL CHEMBL1170047
33E UniChem DrugBank DB13877
33E UniChem PDBe 33E
33E UniChem 'Guide to Pharmacology' 8360
33E UniChem 'PubChem DOTF' 99431610
33E UniChem ChEBI 95067
33E UniChem ZINC ZINC000033963533
33E UniChem fdasrs 2ZWI7KHK8F
33E UniChem HMDB HMDB0246473
33E UniChem Selleck BSI-201
33E UniChem 'PubChem TPHARMA' 14751362
33E UniChem LINCS LSM-6317
33E UniChem 'EPA CompTox Dashboard' DTXSID30166784
33E UniChem ChemicalBook CB11393320
33E UniChem ClinicalTrials BSI-201
33E UniChem ClinicalTrials INIPARIB
33E UniChem MedChemExpress HY-12015
33E UniChem 'Probes And Drugs' PD011149
33E UniChem eMolecules 31531387
33E UniChem SureChEMBL SCHEMBL242006
33E UniChem PubChem 9796068
33E UniChem ACTor 160003-66-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
33E OAC -3.530 1.142 -1.386 ETKDGv3 1
33E NAM -2.599 1.488 -0.631 ETKDGv3 2
33E OAD -2.499 2.812 -0.268 ETKDGv3 3
33E CAL -1.560 0.558 -0.278 ETKDGv3 4
33E CAH -0.302 1.006 -0.096 ETKDGv3 5
33E CAJ -1.839 -0.901 -0.114 ETKDGv3 6
33E IAE -3.794 -1.720 -0.203 ETKDGv3 7
33E CAF -0.836 -1.739 0.178 ETKDGv3 8
33E CAG 0.540 -1.239 0.350 ETKDGv3 9
33E CAK 0.809 0.072 0.221 ETKDGv3 10
33E CAI 2.179 0.607 0.412 ETKDGv3 11
33E OAB 2.334 1.823 0.705 ETKDGv3 12
33E NAA 3.338 -0.217 0.252 ETKDGv3 13
33E H1 -0.083 2.059 -0.220 ETKDGv3 14
33E H2 -1.031 -2.795 0.319 ETKDGv3 15
33E H3 1.309 -1.949 0.619 ETKDGv3 16
33E H4 3.278 -1.180 -0.145 ETKDGv3 17
33E H5 4.285 0.174 0.450 ETKDGv3 18
#