data_36Q # _chem_comp.id 36Q _chem_comp.name (2S)-3-phenyl-2-(9H-purin-6-ylamino)propan-1-ol _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H15 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-06-25 _chem_comp.pdbx_modified_date 2015-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 36Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QP3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 36Q C4 C4 C 0 1 Y N N N N N -17.394 -40.429 -30.447 -2.805 0.035 -0.161 C4 36Q 1 36Q C5 C5 C 0 1 Y N N N N N -17.612 -41.642 -29.821 -2.466 1.062 -1.022 C5 36Q 2 36Q C6 C6 C 0 1 Y N N N N N -18.870 -42.215 -29.857 -2.865 2.356 -0.745 C6 36Q 3 36Q C7 C7 C 0 1 N N N N N N -16.024 -39.802 -30.426 -2.370 -1.376 -0.463 C7 36Q 4 36Q C8 C8 C 0 1 N N S N N N -15.693 -39.075 -29.127 -1.003 -1.636 0.173 C8 36Q 5 36Q C10 C10 C 0 1 N N N N N N -14.169 -38.952 -29.075 -0.618 -3.103 -0.026 C10 36Q 6 36Q N12 N12 N 0 1 N N N N N N -16.299 -37.740 -29.150 0.001 -0.777 -0.459 N12 36Q 7 36Q C13 C13 C 0 1 Y N N N N N -16.164 -36.877 -28.073 1.150 -0.432 0.231 C13 36Q 8 36Q C15 C15 C 0 1 Y N N N N N -16.350 -34.690 -27.068 3.267 0.711 0.392 C15 36Q 9 36Q C21 C21 C 0 1 Y N N N N N -15.555 -36.488 -25.878 2.451 -0.546 2.134 C21 36Q 10 36Q C1 C1 C 0 1 Y N N N N N -19.901 -41.580 -30.527 -3.601 2.624 0.394 C1 36Q 11 36Q C2 C2 C 0 1 Y N N N N N -19.684 -40.369 -31.155 -3.940 1.597 1.255 C2 36Q 12 36Q C3 C3 C 0 1 Y N N N N N -18.427 -39.798 -31.117 -3.537 0.303 0.980 C3 36Q 13 36Q O11 O11 O 0 1 N N N N N N -13.582 -40.170 -29.534 -0.669 -3.424 -1.418 O11 36Q 14 36Q C14 C14 C 0 1 Y N N N N N -16.515 -35.520 -28.192 2.121 0.396 -0.358 C14 36Q 15 36Q N16 N16 N 0 1 Y N N N N N -16.760 -33.439 -27.451 4.036 1.513 -0.413 N16 36Q 16 36Q C18 C18 C 0 1 Y N N N N N -17.152 -33.527 -28.754 3.367 1.675 -1.589 C18 36Q 17 36Q N19 N19 N 0 1 Y N N N N N -17.010 -34.745 -29.189 2.246 1.015 -1.557 N19 36Q 18 36Q N20 N20 N 0 1 Y N N N N N -15.873 -35.213 -25.946 3.390 0.220 1.620 N20 36Q 19 36Q N22 N22 N 0 1 Y N N N N N -15.694 -37.305 -26.904 1.358 -0.871 1.468 N22 36Q 20 36Q H1 H1 H 0 1 N N N N N N -16.804 -42.140 -29.306 -1.890 0.853 -1.912 H1 36Q 21 36Q H2 H2 H 0 1 N N N N N N -19.048 -43.158 -29.362 -2.600 3.158 -1.418 H2 36Q 22 36Q H3 H3 H 0 1 N N N N N N -15.278 -40.596 -30.577 -3.099 -2.076 -0.056 H3 36Q 23 36Q H4 H4 H 0 1 N N N N N N -15.962 -39.079 -31.252 -2.300 -1.511 -1.542 H4 36Q 24 36Q H5 H5 H 0 1 N N N N N N -16.054 -39.656 -28.266 -1.051 -1.415 1.240 H5 36Q 25 36Q H6 H6 H 0 1 N N N N N N -13.851 -38.758 -28.040 0.392 -3.268 0.348 H6 36Q 26 36Q H7 H7 H 0 1 N N N N N N -13.845 -38.122 -29.720 -1.316 -3.739 0.519 H7 36Q 27 36Q H8 H8 H 0 1 N N N N N N -15.916 -37.267 -29.943 -0.139 -0.451 -1.362 H8 36Q 28 36Q H9 H9 H 0 1 N N N N N N -15.166 -36.879 -24.949 2.583 -0.930 3.135 H9 36Q 29 36Q H10 H10 H 0 1 N N N N N N -20.881 -42.034 -30.559 -3.912 3.635 0.610 H10 36Q 30 36Q H11 H11 H 0 1 N N N N N N -20.492 -39.872 -31.672 -4.511 1.806 2.147 H11 36Q 31 36Q H12 H12 H 0 1 N N N N N N -18.250 -38.855 -31.612 -3.801 -0.499 1.653 H12 36Q 32 36Q H13 H13 H 0 1 N N N N N N -12.635 -40.097 -29.503 -0.436 -4.340 -1.619 H13 36Q 33 36Q H14 H14 H 0 1 N N N N N N -16.770 -32.617 -26.882 4.898 1.897 -0.185 H14 36Q 34 36Q H15 H15 H 0 1 N N N N N N -17.527 -32.702 -29.342 3.719 2.257 -2.428 H15 36Q 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 36Q C2 C3 DOUB Y N 1 36Q C2 C1 SING Y N 2 36Q C3 C4 SING Y N 3 36Q C1 C6 DOUB Y N 4 36Q C4 C7 SING N N 5 36Q C4 C5 DOUB Y N 6 36Q C7 C8 SING N N 7 36Q C6 C5 SING Y N 8 36Q O11 C10 SING N N 9 36Q N19 C18 DOUB Y N 10 36Q N19 C14 SING Y N 11 36Q N12 C8 SING N N 12 36Q N12 C13 SING N N 13 36Q C8 C10 SING N N 14 36Q C18 N16 SING Y N 15 36Q C14 C13 DOUB Y N 16 36Q C14 C15 SING Y N 17 36Q C13 N22 SING Y N 18 36Q N16 C15 SING Y N 19 36Q C15 N20 DOUB Y N 20 36Q N22 C21 DOUB Y N 21 36Q N20 C21 SING Y N 22 36Q C5 H1 SING N N 23 36Q C6 H2 SING N N 24 36Q C7 H3 SING N N 25 36Q C7 H4 SING N N 26 36Q C8 H5 SING N N 27 36Q C10 H6 SING N N 28 36Q C10 H7 SING N N 29 36Q N12 H8 SING N N 30 36Q C21 H9 SING N N 31 36Q C1 H10 SING N N 32 36Q C2 H11 SING N N 33 36Q C3 H12 SING N N 34 36Q O11 H13 SING N N 35 36Q N16 H14 SING N N 36 36Q C18 H15 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 36Q SMILES ACDLabs 12.01 n2c1c(ncn1)c(nc2)NC(Cc3ccccc3)CO 36Q InChI InChI 1.03 InChI=1S/C14H15N5O/c20-7-11(6-10-4-2-1-3-5-10)19-14-12-13(16-8-15-12)17-9-18-14/h1-5,8-9,11,20H,6-7H2,(H2,15,16,17,18,19)/t11-/m0/s1 36Q InChIKey InChI 1.03 KOHQRNQTKFJUQF-NSHDSACASA-N 36Q SMILES_CANONICAL CACTVS 3.385 OC[C@H](Cc1ccccc1)Nc2ncnc3[nH]cnc23 36Q SMILES CACTVS 3.385 OC[CH](Cc1ccccc1)Nc2ncnc3[nH]cnc23 36Q SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C[C@@H](CO)Nc2c3c([nH]cn3)ncn2 36Q SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CC(CO)Nc2c3c([nH]cn3)ncn2 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 36Q "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-3-phenyl-2-(9H-purin-6-ylamino)propan-1-ol 36Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-3-phenyl-2-(9H-purin-6-ylamino)propan-1-ol # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 36Q 'Create component' 2014-06-25 RCSB 36Q 'Initial release' 2015-09-23 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal 36Q C4 C 5.598 2.625 1 36Q C5 C 4.299 1.875 2 36Q C6 C 3.000 2.625 3 36Q C7 C 6.897 1.875 4 36Q C8 C 6.897 0.375 5 36Q C10 C 5.598 -0.375 6 36Q N12 N 8.196 -0.375 7 36Q C13 C 8.196 -1.875 8 36Q C15 C 9.495 -4.125 9 36Q C21 C 6.897 -4.125 10 36Q C1 C 3.000 4.125 11 36Q C2 C 4.299 4.875 12 36Q C3 C 5.598 4.125 13 36Q O11 O 4.299 0.375 14 36Q C14 C 9.495 -2.625 15 36Q N16 N 10.915 -4.582 16 36Q C18 C 11.790 -3.375 17 36Q N19 N 10.915 -2.168 18 36Q N20 N 8.196 -4.875 19 36Q N22 N 6.897 -2.625 20 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal 36Q C2 C3 DOUBLE NONE 1 36Q C2 C1 SINGLE NONE 2 36Q C3 C4 SINGLE NONE 3 36Q C1 C6 DOUBLE NONE 4 36Q C4 C7 SINGLE NONE 5 36Q C4 C5 DOUBLE NONE 6 36Q C8 C7 SINGLE BEGINDASH 7 36Q C6 C5 SINGLE NONE 8 36Q O11 C10 SINGLE NONE 9 36Q N19 C18 DOUBLE NONE 10 36Q N19 C14 SINGLE NONE 11 36Q N12 C8 SINGLE NONE 12 36Q N12 C13 SINGLE NONE 13 36Q C8 C10 SINGLE NONE 14 36Q C18 N16 SINGLE NONE 15 36Q C14 C13 DOUBLE NONE 16 36Q C14 C15 SINGLE NONE 17 36Q C13 N22 SINGLE NONE 18 36Q N16 C15 SINGLE NONE 19 36Q C15 N20 DOUBLE NONE 20 36Q N22 C21 DOUBLE NONE 21 36Q N20 C21 SINGLE NONE 22 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys 36Q MurckoScaffold S1 scaffold 'c1ccc(CCNc2ncnc3[nH]cnc23)cc1' InChI=1S/C13H13N5/c1-2-4-10(5-3-1)6-7-14-12-11-13(16-8-15-11)18-9-17-12/h1-5,8-9H,6-7H2,(H2,14,15,16,17,18) GPGPFPKQCMKMDY-UHFFFAOYSA-N 36Q adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N 36Q imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N 36Q phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N 36Q purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N 36Q pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal 36Q C4 S1 1 36Q C5 S1 1 36Q C6 S1 1 36Q C7 S1 1 36Q C8 S1 1 36Q N12 S1 1 36Q C13 S1 1 36Q C15 S1 1 36Q C21 S1 1 36Q C1 S1 1 36Q C2 S1 1 36Q C3 S1 1 36Q C14 S1 1 36Q N16 S1 1 36Q C18 S1 1 36Q N19 S1 1 36Q N20 S1 1 36Q N22 S1 1 36Q N22 F1 1 36Q C13 F1 1 36Q C14 F1 1 36Q C15 F1 1 36Q N20 F1 1 36Q C21 F1 1 36Q N16 F1 1 36Q C18 F1 1 36Q N19 F1 1 36Q N12 F1 1 36Q C15 F2 1 36Q C14 F2 1 36Q N19 F2 1 36Q C18 F2 1 36Q N16 F2 1 36Q C4 F3 1 36Q C3 F3 1 36Q C2 F3 1 36Q C1 F3 1 36Q C6 F3 1 36Q C5 F3 1 36Q N19 F4 1 36Q C18 F4 1 36Q N16 F4 1 36Q C15 F4 1 36Q C14 F4 1 36Q C13 F4 1 36Q N22 F4 1 36Q C21 F4 1 36Q N20 F4 1 36Q C14 F5 1 36Q C13 F5 1 36Q N22 F5 1 36Q C21 F5 1 36Q N20 F5 1 36Q C15 F5 1 # _pdbe_chem_comp_rdkit_properties.comp_id 36Q _pdbe_chem_comp_rdkit_properties.exactmw 269.128 _pdbe_chem_comp_rdkit_properties.amw 269.308 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 3 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6 _pdbe_chem_comp_rdkit_properties.NumHBD 3 _pdbe_chem_comp_rdkit_properties.NumHBA 5 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20 _pdbe_chem_comp_rdkit_properties.NumAtoms 35 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.214 _pdbe_chem_comp_rdkit_properties.NumRings 3 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 3 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 136.755 _pdbe_chem_comp_rdkit_properties.tpsa 86.720 _pdbe_chem_comp_rdkit_properties.CrippenClogP 0.505 _pdbe_chem_comp_rdkit_properties.CrippenMR 73.030 _pdbe_chem_comp_rdkit_properties.chi0v 9.644 _pdbe_chem_comp_rdkit_properties.chi1v 5.190 _pdbe_chem_comp_rdkit_properties.chi2v 2.111 _pdbe_chem_comp_rdkit_properties.chi3v 2.111 _pdbe_chem_comp_rdkit_properties.chi4v 1.317 _pdbe_chem_comp_rdkit_properties.chi0n 24.644 _pdbe_chem_comp_rdkit_properties.chi1n 12.493 _pdbe_chem_comp_rdkit_properties.chi2n 2.111 _pdbe_chem_comp_rdkit_properties.chi3n 2.111 _pdbe_chem_comp_rdkit_properties.chi4n 1.317 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.470 _pdbe_chem_comp_rdkit_properties.kappa1 4.017 _pdbe_chem_comp_rdkit_properties.kappa2 5.664 _pdbe_chem_comp_rdkit_properties.kappa3 2.597 _pdbe_chem_comp_rdkit_properties.Phi 1.138 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id 36Q UniChem PDBe 36Q 36Q UniChem SureChEMBL SCHEMBL9382679 36Q UniChem PubChem 57250213 36Q UniChem Nikkaji J52.749A # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 36Q C4 -2.001 -0.293 -0.800 ETKDGv3 1 36Q C5 -3.202 0.022 -0.280 ETKDGv3 2 36Q C6 -3.820 1.332 -0.573 ETKDGv3 3 36Q C7 -1.343 -1.609 -0.472 ETKDGv3 4 36Q C8 -0.682 -1.580 0.922 ETKDGv3 5 36Q C10 -0.008 -2.922 1.255 ETKDGv3 6 36Q N12 0.259 -0.459 1.058 ETKDGv3 7 36Q C13 1.424 -0.258 0.238 ETKDGv3 8 36Q C15 3.263 1.060 -0.522 ETKDGv3 9 36Q C21 2.879 -1.022 -1.527 ETKDGv3 10 36Q C1 -3.182 2.216 -1.350 ETKDGv3 11 36Q C2 -1.860 1.883 -1.917 ETKDGv3 12 36Q C3 -1.299 0.695 -1.659 ETKDGv3 13 36Q O11 0.628 -2.860 2.503 ETKDGv3 14 36Q C14 2.151 0.855 0.329 ETKDGv3 15 36Q N16 3.786 2.345 -0.272 ETKDGv3 16 36Q C18 2.909 2.841 0.758 ETKDGv3 17 36Q N19 1.961 2.017 1.125 ETKDGv3 18 36Q N20 3.633 0.209 -1.427 ETKDGv3 19 36Q N22 1.845 -1.234 -0.746 ETKDGv3 20 36Q H1 -3.725 -0.675 0.363 ETKDGv3 21 36Q H2 -4.788 1.576 -0.155 ETKDGv3 22 36Q H3 -2.109 -2.415 -0.497 ETKDGv3 23 36Q H4 -0.599 -1.863 -1.255 ETKDGv3 24 36Q H5 -1.496 -1.437 1.668 ETKDGv3 25 36Q H6 0.747 -3.185 0.486 ETKDGv3 26 36Q H7 -0.768 -3.737 1.256 ETKDGv3 27 36Q H8 0.034 0.260 1.783 ETKDGv3 28 36Q H9 3.164 -1.769 -2.254 ETKDGv3 29 36Q H10 -3.633 3.177 -1.563 ETKDGv3 30 36Q H11 -1.346 2.601 -2.542 ETKDGv3 31 36Q H12 -0.329 0.459 -2.079 ETKDGv3 32 36Q H13 -0.089 -2.890 3.189 ETKDGv3 33 36Q H14 4.577 2.833 -0.746 ETKDGv3 34 36Q H15 3.018 3.825 1.194 ETKDGv3 35 #