data_37Y
#
_chem_comp.id 37Y
_chem_comp.name
N-(morpholin-4-ylacetyl)-D-alanyl-N-[(2S,4R)-1-cyclohexyl-5-hydroxy-4-methyl-3-oxopentan-2-yl]-O-methyl-L-tyrosinamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H48 N4 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-07-07
_chem_comp.pdbx_modified_date 2014-07-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 588.735
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 37Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4QLS
_chem_comp.pdbx_subcomponent_list "00E DAL 0A1 0B2"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
37Y C2 C2 C 0 1 N N N N N N 7.758 -136.095 19.504 -4.753 -1.039 0.315 C 00E 1
37Y O3 O3 O 0 1 N N N N N N 7.280 -136.975 18.791 -4.703 -1.947 1.117 O 00E 2
37Y C4 C4 C 0 1 N N N N N N 6.990 -134.851 19.956 -6.006 -0.814 -0.491 CA 00E 3
37Y N5 N5 N 0 1 N N N N N N 5.643 -134.736 19.434 -7.010 -1.823 -0.127 NB 00E 4
37Y O8 O8 O 0 1 N N N N N N 3.223 -134.679 18.243 -9.544 -2.719 0.689 OZ 00E 5
37Y C6 C6 C 0 1 N N N N N N 5.563 -134.385 18.011 -7.458 -1.644 1.262 CD1 00E 6
37Y C10 C10 C 0 1 N N N N N N 4.675 -135.791 19.798 -8.152 -1.788 -1.052 CD2 00E 7
37Y C7 C7 C 0 1 N N N N N N 4.242 -133.726 17.782 -8.456 -2.749 1.617 CE1 00E 8
37Y C9 C9 C 0 1 N N N N N N 3.363 -135.103 19.637 -9.143 -2.892 -0.673 CE2 00E 9
37Y N1 N1 N 0 1 N N N N N N 9.001 -136.099 20.012 -3.690 -0.227 0.148 N DAL 10
37Y C11 C11 C 0 1 N N R N N N 9.980 -137.156 19.772 -2.471 -0.445 0.931 CA DAL 11
37Y C12 C12 C 0 1 N N N N N N 10.856 -137.281 21.023 -2.605 0.251 2.287 CB DAL 12
37Y C13 C13 C 0 1 N N N N N N 10.871 -136.764 18.597 -1.289 0.122 0.189 C DAL 13
37Y O14 O14 O 0 1 N N N N N N 11.430 -135.668 18.587 -1.448 0.656 -0.888 O DAL 14
37Y N15 N15 N 0 1 N N N N N N 11.021 -137.698 17.647 -0.054 0.036 0.722 N 0A1 15
37Y C16 C16 C 0 1 N N S N N N 11.890 -137.475 16.479 1.096 0.587 0.001 CA 0A1 16
37Y C17 C17 C 0 1 N N N N N N 12.950 -138.564 16.413 1.225 2.080 0.312 CB 0A1 17
37Y C18 C18 C 0 1 Y N N N N N 13.880 -138.326 17.453 0.025 2.812 -0.231 CG 0A1 18
37Y C19 C19 C 0 1 Y N N N N N 15.132 -137.762 17.187 0.045 3.309 -1.521 CD1 0A1 19
37Y C20 C20 C 0 1 Y N N N N N 16.045 -137.536 18.218 -1.053 3.980 -2.021 CE1 0A1 20
37Y C21 C21 C 0 1 Y N N N N N 15.731 -137.879 19.535 -2.178 4.155 -1.228 CZ 0A1 21
37Y O22 O22 O 0 1 N N N N N N 16.657 -137.630 20.520 -3.261 4.815 -1.719 OH 0A1 22
37Y C23 C23 C 0 1 N N N N N N 16.787 -138.556 21.621 -4.383 4.957 -0.846 CM 0A1 23
37Y C24 C24 C 0 1 Y N N N N N 14.479 -138.439 19.804 -2.197 3.655 0.065 CE2 0A1 24
37Y C25 C25 C 0 1 Y N N N N N 13.572 -138.668 18.772 -1.097 2.980 0.559 CD2 0A1 25
37Y C26 C26 C 0 1 N N N N N N 11.026 -137.497 15.210 2.350 -0.127 0.434 C 0A1 26
37Y O27 O27 O 0 1 N N N N N N 9.883 -137.947 15.240 2.290 -1.009 1.264 O 0A1 27
37Y N28 N28 N 0 1 N N N N N N 11.611 -136.978 14.117 3.539 0.215 -0.100 N28 0B2 28
37Y C29 C29 C 0 1 N N S N N N 10.926 -136.905 12.819 4.759 -0.479 0.321 C29 0B2 29
37Y C30 C30 C 0 1 N N N N N N 10.874 -135.470 12.318 5.806 -0.390 -0.791 C30 0B2 30
37Y C41 C41 C 0 1 N N N N N N 10.062 -134.507 13.221 5.302 -1.140 -2.026 C41 0B2 31
37Y C42 C42 C 0 1 N N N N N N 9.950 -133.256 12.422 6.283 -0.934 -3.182 C42 0B2 32
37Y C43 C43 C 0 1 N N N N N N 9.359 -132.181 13.316 5.780 -1.683 -4.418 C43 0B2 33
37Y C44 C44 C 0 1 N N N N N N 7.935 -132.529 13.681 5.672 -3.176 -4.100 C44 0B2 34
37Y C45 C45 C 0 1 N N N N N N 7.869 -133.915 14.337 4.692 -3.382 -2.943 C45 0B2 35
37Y C46 C46 C 0 1 N N N N N N 8.636 -134.985 13.527 5.195 -2.632 -1.708 C46 0B2 36
37Y C31 C31 C 0 1 N N N N N N 11.700 -137.696 11.730 5.298 0.167 1.571 C31 0B2 37
37Y O32 O32 O 0 1 N N N N N N 13.090 -137.326 11.802 4.898 1.256 1.909 O32 0B2 38
37Y C37 C37 C 0 1 N N R N N N 11.563 -139.293 11.748 6.336 -0.545 2.400 C37 0B2 39
37Y C38 C38 C 0 1 N N N N N N 10.134 -139.705 12.199 5.644 -1.504 3.370 C38 0B2 40
37Y C39 C39 C 0 1 N N N N N N 12.473 -139.788 12.896 7.149 0.482 3.191 C39 0B2 41
37Y O40 O40 O 0 1 N N N N N N 13.533 -140.530 12.277 8.207 -0.182 3.885 O40 0B2 42
37Y H1 H1 H 0 1 N N N N N N 7.557 -133.965 19.634 -6.399 0.181 -0.282 HAA 00E 43
37Y H2 H2 H 0 1 N N N N N N 6.929 -134.868 21.054 -5.775 -0.898 -1.553 HAB 00E 44
37Y H4 H4 H 0 1 N N N N N N 5.641 -135.293 17.396 -6.600 -1.699 1.931 HD1 00E 45
37Y H5 H5 H 0 1 N N N N N N 6.378 -133.694 17.749 -7.939 -0.671 1.366 HD1A 00E 46
37Y H6 H6 H 0 1 N N N N N N 4.756 -136.654 19.121 -8.645 -0.818 -0.985 HD2 00E 47
37Y H7 H7 H 0 1 N N N N N N 4.823 -136.124 20.836 -7.801 -1.947 -2.071 HD2A 00E 48
37Y H8 H8 H 0 1 N N N N N N 4.178 -132.791 18.358 -8.834 -2.587 2.626 HE1 00E 49
37Y H9 H9 H 0 1 N N N N N N 4.105 -133.509 16.712 -7.959 -3.718 1.565 HE1A 00E 50
37Y H10 H10 H 0 1 N N N N N N 3.323 -134.224 20.297 -8.667 -3.865 -0.792 HE2 00E 51
37Y H11 H11 H 0 1 N N N N N N 2.548 -135.795 19.897 -10.019 -2.833 -1.320 HE2A 00E 52
37Y H12 H12 H 0 1 N N N N N N 9.273 -135.330 20.591 -3.732 0.501 -0.491 H DAL 53
37Y H13 H13 H 0 1 N N N N N N 9.482 -138.115 19.565 -2.325 -1.515 1.085 HA DAL 54
37Y H14 H14 H 0 1 N N N N N N 10.230 -137.564 21.883 -2.751 1.321 2.133 HB1 DAL 55
37Y H15 H15 H 0 1 N N N N N N 11.623 -138.053 20.858 -3.460 -0.159 2.823 HB2 DAL 56
37Y H16 H16 H 0 1 N N N N N N 11.344 -136.317 21.226 -1.698 0.089 2.869 HB3 DAL 57
37Y H17 H17 H 0 1 N N N N N N 10.532 -138.566 17.733 0.073 -0.391 1.584 HN1 0A1 58
37Y H18 H18 H 0 1 N N N N N N 12.382 -136.495 16.561 0.952 0.451 -1.071 HA 0A1 59
37Y H19 H19 H 0 1 N N N N N N 12.482 -139.550 16.548 1.280 2.222 1.391 HBC1 0A1 60
37Y H20 H20 H 0 1 N N N N N N 13.461 -138.531 15.439 2.130 2.471 -0.153 HBC2 0A1 61
37Y H21 H21 H 0 1 N N N N N N 15.395 -137.499 16.173 0.921 3.173 -2.138 HD1 0A1 62
37Y H27 H27 H 0 1 N N N N N N 12.615 -139.117 18.995 -1.112 2.587 1.565 HD2 0A1 63
37Y H22 H22 H 0 1 N N N N N N 17.004 -137.092 17.995 -1.036 4.369 -3.029 HE1 0A1 64
37Y H26 H26 H 0 1 N N N N N N 14.213 -138.696 20.819 -3.071 3.790 0.685 HE2 0A1 65
37Y H23 H23 H 0 1 N N N N N N 17.569 -138.202 22.309 -5.176 5.502 -1.360 HMC1 0A1 66
37Y H24 H24 H 0 1 N N N N N N 15.830 -138.623 22.158 -4.747 3.971 -0.558 HMC2 0A1 67
37Y H25 H25 H 0 1 N N N N N N 17.061 -139.549 21.235 -4.083 5.509 0.045 HMC3 0A1 68
37Y H28 H28 H 0 1 N N N N N N 12.545 -136.629 14.190 3.587 0.921 -0.764 H28 0B2 69
37Y H29 H29 H 0 1 N N N N N N 9.905 -137.306 12.901 4.530 -1.525 0.522 H29 0B2 70
37Y H30 H30 H 0 1 N N N N N N 11.905 -135.091 12.250 5.978 0.656 -1.046 H30 0B2 71
37Y H31 H31 H 0 1 N N N N N N 10.417 -135.471 11.317 6.738 -0.839 -0.448 H31 0B2 72
37Y H32 H32 H 0 1 N N N N N N 10.608 -134.323 14.158 4.322 -0.757 -2.309 H32 0B2 73
37Y H33 H33 H 0 1 N N N N N N 10.946 -132.945 12.073 6.359 0.130 -3.409 H33 0B2 74
37Y H34 H34 H 0 1 N N N N N N 9.293 -133.424 11.556 7.264 -1.316 -2.900 H34 0B2 75
37Y H35 H35 H 0 1 N N N N N N 9.960 -132.101 14.234 4.799 -1.301 -4.700 H35 0B2 76
37Y H36 H36 H 0 1 N N N N N N 9.373 -131.218 12.784 6.478 -1.536 -5.241 H36 0B2 77
37Y H37 H37 H 0 1 N N N N N N 7.548 -131.777 14.385 5.314 -3.710 -4.980 H37 0B2 78
37Y H38 H38 H 0 1 N N N N N N 7.318 -132.530 12.770 6.653 -3.559 -3.817 H38 0B2 79
37Y H39 H39 H 0 1 N N N N N N 6.815 -134.219 14.416 3.711 -3.000 -3.226 H39 0B2 80
37Y H40 H40 H 0 1 N N N N N N 8.308 -133.851 15.343 4.615 -4.446 -2.717 H40 0B2 81
37Y H41 H41 H 0 1 N N N N N N 8.106 -135.172 12.581 6.176 -3.015 -1.426 H41 0B2 82
37Y H42 H42 H 0 1 N N N N N N 8.684 -135.916 14.111 4.497 -2.779 -0.884 H42 0B2 83
37Y H45 H45 H 0 1 N N N N N N 11.837 -139.733 10.778 7.000 -1.107 1.744 H45 0B2 84
37Y H46 H46 H 0 1 N N N N N N 10.053 -140.802 12.207 5.064 -2.235 2.807 H46 0B2 85
37Y H47 H47 H 0 1 N N N N N N 9.942 -139.316 13.210 6.395 -2.019 3.969 H47 0B2 86
37Y H48 H48 H 0 1 N N N N N N 9.394 -139.288 11.499 4.979 -0.941 4.026 H48 0B2 87
37Y H49 H49 H 0 1 N N N N N N 12.882 -138.933 13.454 7.570 1.218 2.506 H49 0B2 88
37Y H50 H50 H 0 1 N N N N N N 11.905 -140.435 13.581 6.501 0.983 3.909 H50 0B2 89
37Y H51 H51 H 0 1 N N N N N N 14.123 -140.857 12.945 8.765 0.410 4.409 H51 0B2 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
37Y C31 C37 SING N N 1
37Y C31 O32 DOUB N N 2
37Y C31 C29 SING N N 3
37Y C37 C38 SING N N 4
37Y C37 C39 SING N N 5
37Y O40 C39 SING N N 6
37Y C30 C29 SING N N 7
37Y C30 C41 SING N N 8
37Y C42 C41 SING N N 9
37Y C42 C43 SING N N 10
37Y C29 N28 SING N N 11
37Y C41 C46 SING N N 12
37Y C43 C44 SING N N 13
37Y C46 C45 SING N N 14
37Y C44 C45 SING N N 15
37Y N28 C26 SING N N 16
37Y C26 O27 DOUB N N 17
37Y C26 C16 SING N N 18
37Y C17 C16 SING N N 19
37Y C17 C18 SING N N 20
37Y C16 N15 SING N N 21
37Y C19 C18 DOUB Y N 22
37Y C19 C20 SING Y N 23
37Y C18 C25 SING Y N 24
37Y N15 C13 SING N N 25
37Y C7 C6 SING N N 26
37Y C7 O8 SING N N 27
37Y C6 N5 SING N N 28
37Y C20 C21 DOUB Y N 29
37Y O8 C9 SING N N 30
37Y O14 C13 DOUB N N 31
37Y C13 C11 SING N N 32
37Y C25 C24 DOUB Y N 33
37Y O3 C2 DOUB N N 34
37Y N5 C10 SING N N 35
37Y N5 C4 SING N N 36
37Y C2 C4 SING N N 37
37Y C2 N1 SING N N 38
37Y C21 C24 SING Y N 39
37Y C21 O22 SING N N 40
37Y C9 C10 SING N N 41
37Y C11 N1 SING N N 42
37Y C11 C12 SING N N 43
37Y O22 C23 SING N N 44
37Y C4 H1 SING N N 45
37Y C4 H2 SING N N 46
37Y C6 H4 SING N N 47
37Y C6 H5 SING N N 48
37Y C10 H6 SING N N 49
37Y C10 H7 SING N N 50
37Y C7 H8 SING N N 51
37Y C7 H9 SING N N 52
37Y C9 H10 SING N N 53
37Y C9 H11 SING N N 54
37Y N1 H12 SING N N 55
37Y C11 H13 SING N N 56
37Y C12 H14 SING N N 57
37Y C12 H15 SING N N 58
37Y C12 H16 SING N N 59
37Y N15 H17 SING N N 60
37Y C16 H18 SING N N 61
37Y C17 H19 SING N N 62
37Y C17 H20 SING N N 63
37Y C19 H21 SING N N 64
37Y C20 H22 SING N N 65
37Y C23 H23 SING N N 66
37Y C23 H24 SING N N 67
37Y C23 H25 SING N N 68
37Y C24 H26 SING N N 69
37Y C25 H27 SING N N 70
37Y N28 H28 SING N N 71
37Y C29 H29 SING N N 72
37Y C30 H30 SING N N 73
37Y C30 H31 SING N N 74
37Y C41 H32 SING N N 75
37Y C42 H33 SING N N 76
37Y C42 H34 SING N N 77
37Y C43 H35 SING N N 78
37Y C43 H36 SING N N 79
37Y C44 H37 SING N N 80
37Y C44 H38 SING N N 81
37Y C45 H39 SING N N 82
37Y C45 H40 SING N N 83
37Y C46 H41 SING N N 84
37Y C46 H42 SING N N 85
37Y C37 H45 SING N N 86
37Y C38 H46 SING N N 87
37Y C38 H47 SING N N 88
37Y C38 H48 SING N N 89
37Y C39 H49 SING N N 90
37Y C39 H50 SING N N 91
37Y O40 H51 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
37Y SMILES ACDLabs 12.01 O=C(NC(C(=O)NC(C(=O)NC(C(=O)C(C)CO)CC1CCCCC1)Cc2ccc(OC)cc2)C)CN3CCOCC3
37Y InChI InChI 1.03 InChI=1S/C31H48N4O7/c1-21(20-36)29(38)26(17-23-7-5-4-6-8-23)33-31(40)27(18-24-9-11-25(41-3)12-10-24)34-30(39)22(2)32-28(37)19-35-13-15-42-16-14-35/h9-12,21-23,26-27,36H,4-8,13-20H2,1-3H3,(H,32,37)(H,33,40)(H,34,39)/t21-,22-,26+,27+/m1/s1
37Y InChIKey InChI 1.03 CTVSVADXPCPAKI-SZUBIPLGSA-N
37Y SMILES_CANONICAL CACTVS 3.385 COc1ccc(C[C@H](NC(=O)[C@@H](C)NC(=O)CN2CCOCC2)C(=O)N[C@@H](CC3CCCCC3)C(=O)[C@H](C)CO)cc1
37Y SMILES CACTVS 3.385 COc1ccc(C[CH](NC(=O)[CH](C)NC(=O)CN2CCOCC2)C(=O)N[CH](CC3CCCCC3)C(=O)[CH](C)CO)cc1
37Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H](CO)C(=O)[C@H](CC1CCCCC1)NC(=O)[C@H](Cc2ccc(cc2)OC)NC(=O)[C@@H](C)NC(=O)CN3CCOCC3
37Y SMILES "OpenEye OEToolkits" 1.7.6 CC(CO)C(=O)C(CC1CCCCC1)NC(=O)C(Cc2ccc(cc2)OC)NC(=O)C(C)NC(=O)CN3CCOCC3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
37Y "SYSTEMATIC NAME" ACDLabs 12.01 N-(morpholin-4-ylacetyl)-D-alanyl-N-[(2S,4R)-1-cyclohexyl-5-hydroxy-4-methyl-3-oxopentan-2-yl]-O-methyl-L-tyrosinamide
37Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-N-[(2S,4R)-1-cyclohexyl-4-methyl-5-oxidanyl-3-oxidanylidene-pentan-2-yl]-3-(4-methoxyphenyl)-2-[[(2R)-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
37Y 'Create component' 2014-07-07 PDBJ
37Y 'Modify subcomponent list' 2014-07-11 PDBJ
37Y 'Modify name' 2014-07-11 PDBJ
37Y 'Other modification' 2014-07-16 PDBJ
37Y 'Initial release' 2014-07-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
37Y C2 C 15.497 -1.500 1
37Y O3 O 15.497 -3.000 2
37Y C4 C 16.796 -0.750 3
37Y N5 N 18.095 -1.500 4
37Y O8 O 20.693 -3.000 5
37Y C6 C 19.394 -0.750 6
37Y C10 C 18.095 -3.000 7
37Y C7 C 20.693 -1.500 8
37Y C9 C 19.394 -3.750 9
37Y N1 N 14.198 -0.750 10
37Y C11 C 12.899 -1.500 11
37Y C12 C 12.899 -3.000 12
37Y C13 C 11.600 -0.750 13
37Y O14 O 11.600 0.750 14
37Y N15 N 10.301 -1.500 15
37Y C16 C 9.002 -0.750 16
37Y C17 C 7.702 -1.500 17
37Y C18 C 7.702 -3.000 18
37Y C19 C 9.002 -3.750 19
37Y C20 C 9.002 -5.250 20
37Y C21 C 7.702 -6.000 21
37Y O22 O 7.702 -7.500 22
37Y C23 C 6.404 -8.250 23
37Y C24 C 6.404 -5.250 24
37Y C25 C 6.404 -3.750 25
37Y C26 C 9.002 0.750 26
37Y O27 O 10.301 1.500 27
37Y N28 N 7.702 1.500 28
37Y C29 C 7.702 3.000 29
37Y C30 C 9.002 3.750 30
37Y C41 C 9.002 5.250 31
37Y C42 C 7.702 6.000 32
37Y C43 C 7.702 7.500 33
37Y C44 C 9.002 8.250 34
37Y C45 C 10.301 7.500 35
37Y C46 C 10.301 6.000 36
37Y C31 C 6.404 3.750 37
37Y O32 O 6.404 5.250 38
37Y C37 C 5.104 3.000 39
37Y C38 C 5.104 1.500 40
37Y C39 C 3.805 3.750 41
37Y O40 O 3.805 5.250 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
37Y C31 C37 SINGLE NONE 1
37Y C31 O32 DOUBLE NONE 2
37Y C31 C29 SINGLE NONE 3
37Y C37 C38 SINGLE BEGINDASH 4
37Y C37 C39 SINGLE NONE 5
37Y O40 C39 SINGLE NONE 6
37Y C29 C30 SINGLE BEGINDASH 7
37Y C30 C41 SINGLE NONE 8
37Y C42 C41 SINGLE NONE 9
37Y C42 C43 SINGLE NONE 10
37Y C29 N28 SINGLE NONE 11
37Y C41 C46 SINGLE NONE 12
37Y C43 C44 SINGLE NONE 13
37Y C46 C45 SINGLE NONE 14
37Y C44 C45 SINGLE NONE 15
37Y N28 C26 SINGLE NONE 16
37Y C26 O27 DOUBLE NONE 17
37Y C26 C16 SINGLE NONE 18
37Y C16 C17 SINGLE BEGINWEDGE 19
37Y C17 C18 SINGLE NONE 20
37Y C16 N15 SINGLE NONE 21
37Y C19 C18 DOUBLE NONE 22
37Y C19 C20 SINGLE NONE 23
37Y C18 C25 SINGLE NONE 24
37Y N15 C13 SINGLE NONE 25
37Y C7 C6 SINGLE NONE 26
37Y C7 O8 SINGLE NONE 27
37Y C6 N5 SINGLE NONE 28
37Y C20 C21 DOUBLE NONE 29
37Y O8 C9 SINGLE NONE 30
37Y O14 C13 DOUBLE NONE 31
37Y C13 C11 SINGLE NONE 32
37Y C25 C24 DOUBLE NONE 33
37Y O3 C2 DOUBLE NONE 34
37Y N5 C10 SINGLE NONE 35
37Y N5 C4 SINGLE NONE 36
37Y C2 C4 SINGLE NONE 37
37Y C2 N1 SINGLE NONE 38
37Y C21 C24 SINGLE NONE 39
37Y C21 O22 SINGLE NONE 40
37Y C9 C10 SINGLE NONE 41
37Y C11 N1 SINGLE NONE 42
37Y C11 C12 SINGLE BEGINDASH 43
37Y O22 C23 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
37Y MurckoScaffold S1 scaffold 'O=C(CN1CCOCC1)NCC(=O)N[C@@H](Cc1ccccc1)C(=O)NCCC1CCCCC1' InChI=1S/C25H38N4O4/c30-23(18-27-24(31)19-29-13-15-33-16-14-29)28-22(17-21-9-5-2-6-10-21)25(32)26-12-11-20-7-3-1-4-8-20/h2,5-6,9-10,20,22H,1,3-4,7-8,11-19H2,(H,26,32)(H,27,31)(H,28,30)/t22-/m0/s1 NABTVBYUSKPXCD-QFIPXVFZSA-N
37Y amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
37Y cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
37Y peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
37Y phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
37Y Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
37Y C2 S1 1
37Y O3 S1 1
37Y C4 S1 1
37Y N5 S1 1
37Y O8 S1 1
37Y C6 S1 1
37Y C10 S1 1
37Y C7 S1 1
37Y C9 S1 1
37Y N1 S1 1
37Y C11 S1 1
37Y C13 S1 1
37Y O14 S1 1
37Y N15 S1 1
37Y C16 S1 1
37Y C17 S1 1
37Y C18 S1 1
37Y C19 S1 1
37Y C20 S1 1
37Y C21 S1 1
37Y C24 S1 1
37Y C25 S1 1
37Y C26 S1 1
37Y O27 S1 1
37Y N28 S1 1
37Y C29 S1 1
37Y C30 S1 1
37Y C41 S1 1
37Y C42 S1 1
37Y C43 S1 1
37Y C44 S1 1
37Y C45 S1 1
37Y C46 S1 1
37Y N1 F1 1
37Y C2 F1 1
37Y O3 F1 1
37Y C4 F1 1
37Y N15 F1 2
37Y C13 F1 2
37Y O14 F1 2
37Y C11 F1 2
37Y N28 F1 3
37Y C26 F1 3
37Y O27 F1 3
37Y C16 F1 3
37Y C41 F2 1
37Y C42 F2 1
37Y C43 F2 1
37Y C44 F2 1
37Y C45 F2 1
37Y C46 F2 1
37Y O3 F3 1
37Y C2 F3 1
37Y C4 F3 1
37Y N5 F3 1
37Y O14 F3 2
37Y C13 F3 2
37Y C11 F3 2
37Y N1 F3 2
37Y O27 F3 3
37Y C26 F3 3
37Y C16 F3 3
37Y N15 F3 3
37Y O32 F3 4
37Y C31 F3 4
37Y C29 F3 4
37Y N28 F3 4
37Y C18 F4 1
37Y C19 F4 1
37Y C20 F4 1
37Y C21 F4 1
37Y C24 F4 1
37Y C25 F4 1
37Y C26 F5 1
37Y N28 F5 1
37Y C29 F5 1
37Y C30 F5 1
37Y C41 F5 1
37Y C42 F5 1
37Y C43 F5 1
37Y C44 F5 1
37Y C45 F5 1
37Y C46 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 37Y
_pdbe_chem_comp_rdkit_properties.exactmw 588.352
_pdbe_chem_comp_rdkit_properties.amw 588.746
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.677
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 316.320
_pdbe_chem_comp_rdkit_properties.tpsa 146.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.695
_pdbe_chem_comp_rdkit_properties.CrippenMR 156.996
_pdbe_chem_comp_rdkit_properties.chi0v 20.147
_pdbe_chem_comp_rdkit_properties.chi1v 10.350
_pdbe_chem_comp_rdkit_properties.chi2v 3.905
_pdbe_chem_comp_rdkit_properties.chi3v 3.905
_pdbe_chem_comp_rdkit_properties.chi4v 2.219
_pdbe_chem_comp_rdkit_properties.chi0n 68.147
_pdbe_chem_comp_rdkit_properties.chi1n 34.099
_pdbe_chem_comp_rdkit_properties.chi2n 3.905
_pdbe_chem_comp_rdkit_properties.chi3n 3.905
_pdbe_chem_comp_rdkit_properties.chi4n 2.219
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.020
_pdbe_chem_comp_rdkit_properties.kappa1 7.102
_pdbe_chem_comp_rdkit_properties.kappa2 17.182
_pdbe_chem_comp_rdkit_properties.kappa3 10.671
_pdbe_chem_comp_rdkit_properties.Phi 2.905
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
37Y UniChem PDBe 37Y
37Y UniChem ZINC ZINC000098208405
37Y UniChem PubChem 137348131
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
37Y C2 3.731 1.892 -1.097 ETKDGv3 1
37Y O3 2.699 2.433 -1.579 ETKDGv3 2
37Y C4 4.336 0.711 -1.800 ETKDGv3 3
37Y N5 3.584 -0.522 -1.484 ETKDGv3 4
37Y O8 4.307 -3.245 -0.539 ETKDGv3 5
37Y C6 3.714 -0.884 -0.052 ETKDGv3 6
37Y C10 3.955 -1.638 -2.388 ETKDGv3 7
37Y C7 3.431 -2.378 0.169 ETKDGv3 8
37Y C9 4.879 -2.657 -1.698 ETKDGv3 9
37Y N1 4.281 2.357 0.145 ETKDGv3 10
37Y C11 3.495 3.164 1.079 ETKDGv3 11
37Y C12 4.416 3.910 2.049 ETKDGv3 12
37Y C13 2.528 2.268 1.809 ETKDGv3 13
37Y O14 2.908 1.624 2.825 ETKDGv3 14
37Y N15 1.209 2.069 1.281 ETKDGv3 15
37Y C16 0.302 1.034 1.791 ETKDGv3 16
37Y C17 -0.554 1.582 2.948 ETKDGv3 17
37Y C18 -1.414 2.753 2.538 ETKDGv3 18
37Y C19 -2.680 2.566 2.127 ETKDGv3 19
37Y C20 -3.504 3.715 1.699 ETKDGv3 20
37Y C21 -2.998 4.956 1.706 ETKDGv3 21
37Y O22 -3.813 6.016 1.286 ETKDGv3 22
37Y C23 -3.390 7.374 1.245 ETKDGv3 23
37Y C24 -1.596 5.165 2.158 ETKDGv3 24
37Y C25 -0.852 4.125 2.551 ETKDGv3 25
37Y C26 -0.556 0.467 0.685 ETKDGv3 26
37Y O27 -0.851 1.176 -0.317 ETKDGv3 27
37Y N28 -1.083 -0.862 0.801 ETKDGv3 28
37Y C29 -1.976 -1.434 -0.211 ETKDGv3 29
37Y C30 -1.984 -2.976 -0.134 ETKDGv3 30
37Y C41 -0.601 -3.619 -0.408 ETKDGv3 31
37Y C42 -0.080 -3.271 -1.831 ETKDGv3 32
37Y C43 0.875 -4.340 -2.371 ETKDGv3 33
37Y C44 0.177 -5.708 -2.499 ETKDGv3 34
37Y C45 -0.927 -5.933 -1.447 ETKDGv3 35
37Y C46 -0.649 -5.152 -0.158 ETKDGv3 36
37Y C31 -3.378 -0.907 -0.001 ETKDGv3 37
37Y O32 -3.890 -0.994 1.107 ETKDGv3 38
37Y C37 -4.158 -0.284 -1.141 ETKDGv3 39
37Y C38 -4.517 1.172 -0.823 ETKDGv3 40
37Y C39 -5.407 -1.116 -1.475 ETKDGv3 41
37Y O40 -6.307 -1.122 -0.399 ETKDGv3 42
37Y H1 5.410 0.602 -1.532 ETKDGv3 43
37Y H2 4.287 0.921 -2.892 ETKDGv3 44
37Y H4 2.980 -0.298 0.539 ETKDGv3 45
37Y H5 4.733 -0.660 0.335 ETKDGv3 46
37Y H6 4.442 -1.283 -3.323 ETKDGv3 47
37Y H7 3.025 -2.160 -2.699 ETKDGv3 48
37Y H8 2.386 -2.597 -0.129 ETKDGv3 49
37Y H9 3.517 -2.600 1.254 ETKDGv3 50
37Y H10 5.839 -2.167 -1.426 ETKDGv3 51
37Y H11 5.116 -3.467 -2.420 ETKDGv3 52
37Y H12 5.177 1.933 0.478 ETKDGv3 53
37Y H13 2.927 3.936 0.515 ETKDGv3 54
37Y H14 5.087 4.589 1.482 ETKDGv3 55
37Y H15 3.813 4.522 2.754 ETKDGv3 56
37Y H16 5.041 3.199 2.631 ETKDGv3 57
37Y H17 0.866 2.739 0.556 ETKDGv3 58
37Y H18 0.909 0.191 2.190 ETKDGv3 59
37Y H19 -1.188 0.765 3.358 ETKDGv3 60
37Y H20 0.118 1.899 3.775 ETKDGv3 61
37Y H21 -3.111 1.573 2.098 ETKDGv3 62
37Y H27 0.168 4.289 2.877 ETKDGv3 63
37Y H22 -4.522 3.545 1.373 ETKDGv3 64
37Y H26 -1.162 6.156 2.174 ETKDGv3 65
37Y H23 -3.110 7.717 2.264 ETKDGv3 66
37Y H24 -4.225 8.003 0.875 ETKDGv3 67
37Y H25 -2.527 7.485 0.555 ETKDGv3 68
37Y H28 -0.897 -1.396 1.681 ETKDGv3 69
37Y H29 -1.617 -1.139 -1.219 ETKDGv3 70
37Y H30 -2.720 -3.374 -0.868 ETKDGv3 71
37Y H31 -2.333 -3.278 0.879 ETKDGv3 72
37Y H32 0.116 -3.203 0.332 ETKDGv3 73
37Y H33 0.449 -2.293 -1.805 ETKDGv3 74
37Y H34 -0.929 -3.174 -2.544 ETKDGv3 75
37Y H35 1.263 -4.027 -3.364 ETKDGv3 76
37Y H36 1.745 -4.431 -1.685 ETKDGv3 77
37Y H37 0.944 -6.507 -2.406 ETKDGv3 78
37Y H38 -0.273 -5.798 -3.512 ETKDGv3 79
37Y H39 -1.908 -5.610 -1.862 ETKDGv3 80
37Y H40 -1.003 -7.018 -1.216 ETKDGv3 81
37Y H41 -1.415 -5.413 0.604 ETKDGv3 82
37Y H42 0.330 -5.487 0.251 ETKDGv3 83
37Y H45 -3.525 -0.271 -2.056 ETKDGv3 84
37Y H46 -5.077 1.622 -1.670 ETKDGv3 85
37Y H47 -3.590 1.765 -0.669 ETKDGv3 86
37Y H48 -5.141 1.238 0.094 ETKDGv3 87
37Y H49 -5.904 -0.687 -2.374 ETKDGv3 88
37Y H50 -5.100 -2.159 -1.715 ETKDGv3 89
37Y H51 -7.076 -1.679 -0.687 ETKDGv3 90
#