data_3CA
#
_chem_comp.id 3CA
_chem_comp.name "2',4'-DICHLORO-4-HYDROXY-1,1'-BIPHENYL-3-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H8 Cl2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-10-04
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 283.107
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3CA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 2B77
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3CA O1 O1 O 0 1 N N N N N N 44.024 -2.229 53.309 3.203 2.210 -1.164 O1 3CA 1
3CA C9 C9 C 0 1 N N N N N N 43.604 -2.453 54.588 3.671 1.049 -0.664 C9 3CA 2
3CA O91 O91 O 0 1 N N N N N N 43.422 -3.582 54.997 4.869 0.868 -0.570 O91 3CA 3
3CA C8 C8 C 0 1 Y N N N N N 43.396 -1.195 55.404 2.730 0.000 -0.233 C8 3CA 4
3CA C10 C10 C 0 1 Y N N N N N 43.215 0.066 54.758 3.214 -1.212 0.282 C10 3CA 5
3CA O10 O10 O 0 1 N N N N N N 43.222 0.138 53.357 4.551 -1.418 0.389 O10 3CA 6
3CA C11 C11 C 0 1 Y N N N N N 43.022 1.226 55.501 2.325 -2.195 0.692 C11 3CA 7
3CA C12 C12 C 0 1 Y N N N N N 43.004 1.184 56.871 0.966 -1.989 0.585 C12 3CA 8
3CA C13 C13 C 0 1 Y N N N N N 43.188 -0.074 57.604 0.474 -0.789 0.068 C13 3CA 9
3CA C7 C7 C 0 1 Y N N N N N 43.374 -1.240 56.793 1.354 0.205 -0.340 C7 3CA 10
3CA C3 C3 C 0 1 Y N N N N N 43.162 -0.146 58.996 -0.990 -0.575 -0.043 C3 3CA 11
3CA C2 C2 C 0 1 Y N N N N N 43.816 0.887 59.784 -1.793 -1.539 -0.649 C2 3CA 12
3CA C4 C4 C 0 1 Y N N N N N 42.500 -1.238 59.730 -1.567 0.589 0.462 C4 3CA 13
3CA CL CL CL 0 0 N N N N N N 41.705 -2.572 58.883 -0.574 1.795 1.219 CL 3CA 14
3CA C5 C5 C 0 1 Y N N N N N 42.521 -1.227 61.109 -2.930 0.786 0.351 C5 3CA 15
3CA C6 C6 C 0 1 Y N N N N N 43.153 -0.214 61.847 -3.723 -0.175 -0.252 C6 3CA 16
3CA CL1 CL1 CL 0 0 N N N N N N 43.143 -0.257 63.607 -5.436 0.074 -0.384 CL1 3CA 17
3CA C1 C1 C 0 1 Y N N N N N 43.801 0.841 61.157 -3.154 -1.335 -0.751 C1 3CA 18
3CA H91 H91 H 0 1 N N N N N N 43.129 -3.737 55.887 ? ? ? H91 3CA 19
3CA H10 H10 H 0 1 N N N N N N 43.101 0.976 52.927 4.837 -1.826 -0.440 H10 3CA 20
3CA H11 H11 H 0 1 N N N N N N 42.880 2.195 54.995 2.698 -3.126 1.093 H11 3CA 21
3CA H12 H12 H 0 1 N N N N N N 42.843 2.150 57.377 0.279 -2.760 0.902 H12 3CA 22
3CA H7 H7 H 0 1 N N N N N N 43.507 -2.228 57.264 0.974 1.134 -0.740 H7 3CA 23
3CA H2 H2 H 0 1 N N N N N N 44.343 1.738 59.322 -1.351 -2.444 -1.039 H2 3CA 24
3CA H5 H5 H 0 1 N N N N N N 42.017 -2.053 61.637 -3.378 1.689 0.738 H5 3CA 25
3CA H1 H1 H 0 1 N N N N N N 44.309 1.651 61.705 -3.777 -2.082 -1.221 H1 3CA 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3CA O1 C9 DOUB N N 1
3CA C9 O91 SING N N 2
3CA C9 C8 SING N N 3
3CA O91 H91 SING N N 4
3CA C8 C10 SING Y N 5
3CA C8 C7 DOUB Y N 6
3CA C10 O10 SING N N 7
3CA C10 C11 DOUB Y N 8
3CA O10 H10 SING N N 9
3CA C11 C12 SING Y N 10
3CA C11 H11 SING N N 11
3CA C12 C13 DOUB Y N 12
3CA C12 H12 SING N N 13
3CA C13 C7 SING Y N 14
3CA C13 C3 SING Y N 15
3CA C7 H7 SING N N 16
3CA C3 C2 SING Y N 17
3CA C3 C4 DOUB Y N 18
3CA C2 C1 DOUB Y N 19
3CA C2 H2 SING N N 20
3CA C4 CL SING N N 21
3CA C4 C5 SING Y N 22
3CA C5 C6 DOUB Y N 23
3CA C5 H5 SING N N 24
3CA C6 CL1 SING N N 25
3CA C6 C1 SING Y N 26
3CA C1 H1 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3CA SMILES ACDLabs 10.04 Clc2cc(Cl)ccc2c1ccc(O)c(C(=O)O)c1
3CA SMILES_CANONICAL CACTVS 3.341 OC(=O)c1cc(ccc1O)c2ccc(Cl)cc2Cl
3CA SMILES CACTVS 3.341 OC(=O)c1cc(ccc1O)c2ccc(Cl)cc2Cl
3CA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1c2ccc(cc2Cl)Cl)C(=O)O)O
3CA SMILES "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1c2ccc(cc2Cl)Cl)C(=O)O)O
3CA InChI InChI 1.03 InChI=1S/C13H8Cl2O3/c14-8-2-3-9(11(15)6-8)7-1-4-12(16)10(5-7)13(17)18/h1-6,16H,(H,17,18)
3CA InChIKey InChI 1.03 SKAFZYDMDHPPJM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3CA "SYSTEMATIC NAME" ACDLabs 10.04 "2',4'-dichloro-4-hydroxybiphenyl-3-carboxylic acid"
3CA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-(2,4-dichlorophenyl)-2-hydroxy-benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3CA 'Create component' 2005-10-04 RCSB
3CA 'Modify aromatic_flag' 2011-06-04 RCSB
3CA 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 3CA
_pdbe_chem_comp_drugbank_details.drugbank_id DB07047
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2',4'-DICHLORO-4-HYDROXY-1,1'-BIPHENYL-3-CARBOXYLIC ACID"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 3CA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07047
_pdbe_chem_comp_drugbank_classification.parent 'Polychlorinated biphenyls'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as polychlorinated biphenyls. These are organic compounds containing at least two chlorine atoms attached to either benzene ring of the biphenyl moiety.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3CA O1 O 3.805 -2.768 1
3CA C9 C 5.104 -3.518 2
3CA O91 O 5.104 -5.018 3
3CA C8 C 6.404 -2.768 4
3CA C10 C 7.702 -3.518 5
3CA O10 O 7.702 -5.018 6
3CA C11 C 9.002 -2.768 7
3CA C12 C 9.002 -1.268 8
3CA C13 C 7.702 -0.517 9
3CA C7 C 6.404 -1.268 10
3CA C3 C 7.702 0.983 11
3CA C2 C 6.404 1.732 12
3CA C4 C 9.002 1.732 13
3CA CL Cl 10.301 0.983 14
3CA C5 C 9.002 3.232 15
3CA C6 C 7.702 3.982 16
3CA CL1 Cl 7.702 5.482 17
3CA C1 C 6.404 3.232 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3CA O1 C9 DOUBLE NONE 1
3CA C9 O91 SINGLE NONE 2
3CA C9 C8 SINGLE NONE 3
3CA C8 C10 DOUBLE NONE 4
3CA C8 C7 SINGLE NONE 5
3CA C10 O10 SINGLE NONE 6
3CA C10 C11 SINGLE NONE 7
3CA C11 C12 DOUBLE NONE 8
3CA C12 C13 SINGLE NONE 9
3CA C13 C7 DOUBLE NONE 10
3CA C13 C3 SINGLE NONE 11
3CA C3 C2 DOUBLE NONE 12
3CA C3 C4 SINGLE NONE 13
3CA C2 C1 SINGLE NONE 14
3CA C4 CL SINGLE NONE 15
3CA C4 C5 DOUBLE NONE 16
3CA C5 C6 SINGLE NONE 17
3CA C6 CL1 SINGLE NONE 18
3CA C6 C1 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3CA MurckoScaffold S1 scaffold c1ccc(-c2ccccc2)cc1 InChI=1S/C12H10/c1-3-7-11(8-4-1)12-9-5-2-6-10-12/h1-10H ZUOUZKKEUPVFJK-UHFFFAOYSA-N
3CA phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3CA C8 S1 1
3CA C10 S1 1
3CA C11 S1 1
3CA C12 S1 1
3CA C13 S1 1
3CA C7 S1 1
3CA C3 S1 1
3CA C2 S1 1
3CA C4 S1 1
3CA C5 S1 1
3CA C6 S1 1
3CA C1 S1 1
3CA C8 F1 1
3CA C10 F1 1
3CA C11 F1 1
3CA C12 F1 1
3CA C13 F1 1
3CA C7 F1 1
3CA C3 F1 2
3CA C2 F1 2
3CA C1 F1 2
3CA C6 F1 2
3CA C5 F1 2
3CA C4 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 3CA
_pdbe_chem_comp_rdkit_properties.exactmw 281.985
_pdbe_chem_comp_rdkit_properties.amw 283.110
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 124.623
_pdbe_chem_comp_rdkit_properties.tpsa 57.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.167
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.324
_pdbe_chem_comp_rdkit_properties.chi0v 9.993
_pdbe_chem_comp_rdkit_properties.chi1v 5.246
_pdbe_chem_comp_rdkit_properties.chi2v 2.441
_pdbe_chem_comp_rdkit_properties.chi3v 2.441
_pdbe_chem_comp_rdkit_properties.chi4v 1.624
_pdbe_chem_comp_rdkit_properties.chi0n 16.481
_pdbe_chem_comp_rdkit_properties.chi1n 8.307
_pdbe_chem_comp_rdkit_properties.chi2n 1.968
_pdbe_chem_comp_rdkit_properties.chi3n 1.968
_pdbe_chem_comp_rdkit_properties.chi4n 1.198
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 5.954
_pdbe_chem_comp_rdkit_properties.kappa2 4.882
_pdbe_chem_comp_rdkit_properties.kappa3 2.421
_pdbe_chem_comp_rdkit_properties.Phi 1.615
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3CA UniChem ChEMBL CHEMBL123154
3CA UniChem DrugBank DB07047
3CA UniChem PDBe 3CA
3CA UniChem ZINC ZINC000016051803
3CA UniChem SureChEMBL SCHEMBL412559
3CA UniChem 'PubChem TPHARMA' 16511161
3CA UniChem PubChem 5287495
3CA UniChem 'Probes And Drugs' PD006158
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3CA O1 -4.634 -0.341 1.105 ETKDGv3 1
3CA C9 -3.395 -0.351 1.339 ETKDGv3 2
3CA O91 -2.957 -0.574 2.641 ETKDGv3 3
3CA C8 -2.405 -0.130 0.253 ETKDGv3 4
3CA C10 -2.771 0.090 -1.033 ETKDGv3 5
3CA O10 -4.115 0.121 -1.406 ETKDGv3 6
3CA C11 -1.736 0.300 -2.070 ETKDGv3 7
3CA C12 -0.439 0.280 -1.750 ETKDGv3 8
3CA C13 -0.020 0.052 -0.349 ETKDGv3 9
3CA C7 -0.957 -0.151 0.594 ETKDGv3 10
3CA C3 1.420 0.024 -0.005 ETKDGv3 11
3CA C2 1.942 -1.053 0.612 ETKDGv3 12
3CA C4 2.314 1.170 -0.346 ETKDGv3 13
3CA CL 1.679 2.649 -1.058 ETKDGv3 14
3CA C5 3.622 1.106 -0.056 ETKDGv3 15
3CA C6 4.183 -0.090 0.605 ETKDGv3 16
3CA CL1 5.896 -0.158 0.976 ETKDGv3 17
3CA C1 3.383 -1.112 0.929 ETKDGv3 18
3CA H91 -3.617 -0.727 3.394 ETKDGv3 19
3CA H10 -4.392 0.284 -2.366 ETKDGv3 20
3CA H11 -2.029 0.466 -3.099 ETKDGv3 21
3CA H12 0.305 0.420 -2.524 ETKDGv3 22
3CA H7 -0.652 -0.319 1.620 ETKDGv3 23
3CA H2 1.318 -1.902 0.865 ETKDGv3 24
3CA H5 4.273 1.939 -0.289 ETKDGv3 25
3CA H1 3.785 -1.990 1.418 ETKDGv3 26
#