data_3CH
#
_chem_comp.id 3CH
_chem_comp.name 3-CHLOROPHENOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H5 Cl O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-04-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 128.556
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3CH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1LI3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3CH C4 C4 C 0 1 Y N N N N N 26.724 5.142 3.313 1.422 0.010 -0.465 C4 3CH 1
3CH C5 C5 C 0 1 Y N N N N N 27.521 5.841 2.405 1.833 0.006 0.856 C5 3CH 2
3CH C3 C3 C 0 1 Y N N N N N 26.467 5.780 4.516 0.073 -0.001 -0.772 C3 3CH 3
3CH C6 C6 C 0 1 Y N N N N N 28.072 7.099 2.651 0.896 -0.009 1.871 C6 3CH 4
3CH C2 C2 C 0 1 Y N N N N N 27.003 7.032 4.810 -0.867 -0.022 0.241 C2 3CH 5
3CH C1 C1 C 0 1 Y N N N N N 27.803 7.693 3.874 -0.457 -0.021 1.566 C1 3CH 6
3CH OH OH O 0 1 N N N N N N 28.373 8.912 4.123 -1.380 -0.036 2.564 OH 3CH 7
3CH CL CL CL 0 0 N N N N N N 25.677 5.144 5.436 -0.438 0.004 -2.431 CL 3CH 8
3CH HC4 HC4 H 0 1 N N N N N N 26.319 4.140 3.092 2.156 0.022 -1.257 HC4 3CH 9
3CH HC5 HC5 H 0 1 N N N N N N 27.729 5.369 1.430 2.886 0.015 1.093 HC5 3CH 10
3CH HC6 HC6 H 0 1 N N N N N N 28.701 7.608 1.902 1.218 -0.012 2.902 HC6 3CH 11
3CH HC2 HC2 H 0 1 N N N N N N 26.794 7.501 5.786 -1.920 -0.031 0.001 HC2 3CH 12
3CH HO HO H 0 1 N N N N N N 28.189 9.319 4.961 -1.579 0.887 2.775 HO 3CH 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3CH C4 C5 DOUB Y N 1
3CH C4 C3 SING Y N 2
3CH C4 HC4 SING N N 3
3CH C5 C6 SING Y N 4
3CH C5 HC5 SING N N 5
3CH C3 C2 DOUB Y N 6
3CH C3 CL SING N N 7
3CH C6 C1 DOUB Y N 8
3CH C6 HC6 SING N N 9
3CH C2 C1 SING Y N 10
3CH C2 HC2 SING N N 11
3CH C1 OH SING N N 12
3CH OH HO SING N N 13
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3CH SMILES ACDLabs 10.04 Clc1cc(O)ccc1
3CH SMILES_CANONICAL CACTVS 3.341 Oc1cccc(Cl)c1
3CH SMILES CACTVS 3.341 Oc1cccc(Cl)c1
3CH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)Cl)O
3CH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)Cl)O
3CH InChI InChI 1.03 InChI=1S/C6H5ClO/c7-5-2-1-3-6(8)4-5/h1-4,8H
3CH InChIKey InChI 1.03 HORNXRXVQWOLPJ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3CH "SYSTEMATIC NAME" ACDLabs 10.04 3-chlorophenol
3CH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-chlorophenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3CH 'Create component' 2002-04-18 RCSB
3CH 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 3CH
_pdbe_chem_comp_drugbank_details.drugbank_id DB01957
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3-Chlorophenol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 108-43-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 3CH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01957
_pdbe_chem_comp_drugbank_classification.parent M-chlorophenols
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Phenols
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as m-chlorophenols. These are chlorophenols carrying a iodine at the C3 position of the benzene ring.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 3CH
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01957
_pdbe_chem_comp_drugbank_targets.name Endolysin
_pdbe_chem_comp_drugbank_targets.organism 'Enterobacteria phage T4'
_pdbe_chem_comp_drugbank_targets.uniprot_id P00720
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3CH C4 C 6.897 -0.233 1
3CH C5 C 6.897 -1.732 2
3CH C3 C 5.598 0.517 3
3CH C6 C 5.598 -2.482 4
3CH C2 C 4.299 -0.233 5
3CH C1 C 4.299 -1.732 6
3CH OH O 3.000 -2.482 7
3CH CL Cl 5.598 2.018 8
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3CH C4 C5 DOUBLE NONE 1
3CH C4 C3 SINGLE NONE 2
3CH C5 C6 SINGLE NONE 3
3CH C3 C2 DOUBLE NONE 4
3CH C3 CL SINGLE NONE 5
3CH C6 C1 DOUBLE NONE 6
3CH C2 C1 SINGLE NONE 7
3CH C1 OH SINGLE NONE 8
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3CH MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3CH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3CH C4 S1 1
3CH C5 S1 1
3CH C3 S1 1
3CH C6 S1 1
3CH C2 S1 1
3CH C1 S1 1
3CH C4 F1 1
3CH C5 F1 1
3CH C6 F1 1
3CH C1 F1 1
3CH C2 F1 1
3CH C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3CH
_pdbe_chem_comp_rdkit_properties.exactmw 128.003
_pdbe_chem_comp_rdkit_properties.amw 128.558
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 8
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 59.640
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.583
_pdbe_chem_comp_rdkit_properties.CrippenMR 32.507
_pdbe_chem_comp_rdkit_properties.chi0v 4.542
_pdbe_chem_comp_rdkit_properties.chi1v 2.271
_pdbe_chem_comp_rdkit_properties.chi2v 0.761
_pdbe_chem_comp_rdkit_properties.chi3v 0.761
_pdbe_chem_comp_rdkit_properties.chi4v 0.438
_pdbe_chem_comp_rdkit_properties.chi0n 8.786
_pdbe_chem_comp_rdkit_properties.chi1n 4.301
_pdbe_chem_comp_rdkit_properties.chi2n 0.572
_pdbe_chem_comp_rdkit_properties.chi3n 0.572
_pdbe_chem_comp_rdkit_properties.chi4n 0.305
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.690
_pdbe_chem_comp_rdkit_properties.kappa1 1.921
_pdbe_chem_comp_rdkit_properties.kappa2 2.053
_pdbe_chem_comp_rdkit_properties.kappa3 1.138
_pdbe_chem_comp_rdkit_properties.Phi 0.493
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3CH UniChem ChEMBL CHEMBL41172
3CH UniChem DrugBank DB01957
3CH UniChem PDBe 3CH
3CH UniChem 'KEGG LIGAND' C14270
3CH UniChem ChEBI 38855
3CH UniChem ZINC ZINC000000404329
3CH UniChem eMolecules 492611
3CH UniChem fdasrs Z2Z7M2FTAD
3CH UniChem 'PubChem TPHARMA' 15146598
3CH UniChem NMRShiftDB 10015948
3CH UniChem Nikkaji J368I
3CH UniChem BindingDb 50167952
3CH UniChem 'EPA CompTox Dashboard' DTXSID4024800
3CH UniChem BRENDA 12599
3CH UniChem BRENDA 2259
3CH UniChem ChemicalBook CB7740938
3CH UniChem 'Probes And Drugs' PD008270
3CH UniChem SureChEMBL SCHEMBL49772
3CH UniChem PubChem 7933
3CH UniChem Mcule MCULE-4606705291
3CH UniChem ACTor 108-43-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3CH C4 -1.579 0.524 -0.059 ETKDGv3 1
3CH C5 -0.603 1.407 0.187 ETKDGv3 2
3CH C3 -1.251 -0.902 -0.276 ETKDGv3 3
3CH C6 0.805 0.957 0.243 ETKDGv3 4
3CH C2 0.025 -1.310 -0.225 ETKDGv3 5
3CH C1 1.106 -0.337 0.047 ETKDGv3 6
3CH OH 2.427 -0.778 0.096 ETKDGv3 7
3CH CL -2.535 -2.052 -0.598 ETKDGv3 8
3CH HC4 -2.609 0.855 -0.100 ETKDGv3 9
3CH HC5 -0.841 2.450 0.346 ETKDGv3 10
3CH HC6 1.585 1.680 0.443 ETKDGv3 11
3CH HC2 0.272 -2.352 -0.383 ETKDGv3 12
3CH HO 3.196 -0.143 0.280 ETKDGv3 13
#