data_3CT
#
_chem_comp.id 3CT
_chem_comp.name 3-chloro-L-tyrosine
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C9 H10 Cl N O3"
_chem_comp.mon_nstd_parent_comp_id TYR
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-18
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 215.634
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3CT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3WNA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3CT N N N 0 1 N N N Y Y N 31.599 5.859 -32.094 -1.854 1.290 -0.972 N 3CT 1
3CT CA CA C 0 1 N N S Y N N 30.165 5.764 -32.055 -2.318 0.009 -0.423 CA 3CT 2
3CT CB CB C 0 1 N N N N N N 29.618 5.233 -33.336 -1.519 -0.324 0.839 CB 3CT 3
3CT CG CG C 0 1 Y N N N N N 30.116 3.891 -33.793 -0.074 -0.547 0.475 CG 3CT 4
3CT CD2 CD2 C 0 1 Y N N N N N 29.489 2.710 -33.381 0.810 0.516 0.475 CD2 3CT 5
3CT CE2 CE2 C 0 1 Y N N N N N 29.930 1.459 -33.829 2.136 0.314 0.142 CE2 3CT 6
3CT CL CL CL 0 0 N N N N N N 29.261 0.172 -33.367 3.245 1.650 0.143 CL 3CT 7
3CT CZ CZ C 0 1 Y N N N N N 31.001 1.426 -34.727 2.579 -0.958 -0.193 CZ 3CT 8
3CT OH OH O 0 1 N N N N N N 31.471 0.225 -35.203 3.883 -1.160 -0.521 OH 3CT 9
3CT CE1 CE1 C 0 1 Y N N N N N 31.624 2.599 -35.142 1.691 -2.022 -0.193 CE1 3CT 10
3CT CD1 CD1 C 0 1 Y N N N N N 31.173 3.830 -34.691 0.367 -1.815 0.146 CD1 3CT 11
3CT C C C 0 1 N N N Y N Y 29.720 4.897 -30.926 -3.782 0.111 -0.079 C 3CT 12
3CT O O O 0 1 N N N Y N Y 30.508 4.110 -30.431 -4.291 1.195 0.079 O 3CT 13
3CT OXT OXT O 0 1 N Y N Y N Y 28.460 5.030 -30.517 -4.519 -1.003 0.054 OXT 3CT 14
3CT H H H 0 1 N N N Y Y N 31.934 6.217 -31.222 -2.321 1.501 -1.841 H 3CT 15
3CT H2 H2 H 0 1 N Y N Y Y N 31.989 4.952 -32.253 -1.978 2.036 -0.304 H2 3CT 16
3CT HA HA H 0 1 N N N Y N N 29.748 6.770 -31.897 -2.173 -0.778 -1.163 HA 3CT 17
3CT HB2 HB2 H 0 1 N N N N N N 29.858 5.961 -34.125 -1.593 0.503 1.545 HB2 3CT 18
3CT HB3 HB3 H 0 1 N N N N N N 28.526 5.160 -33.224 -1.922 -1.228 1.296 HB3 3CT 19
3CT HD2 HD2 H 0 1 N N N N N N 28.649 2.764 -32.705 0.463 1.506 0.736 HD2 3CT 20
3CT HH HH H 0 1 N N N N N N 30.955 -0.484 -34.839 4.449 -1.376 0.232 HH 3CT 21
3CT HE1 HE1 H 0 1 N N N N N N 32.464 2.550 -35.819 2.033 -3.013 -0.454 HE1 3CT 22
3CT HD1 HD1 H 0 1 N N N N N N 31.643 4.739 -35.037 -0.326 -2.644 0.147 HD1 3CT 23
3CT HXT HXT H 0 1 N Y N Y N Y 28.294 4.428 -29.802 -5.453 -0.887 0.275 HXT 3CT 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3CT OH CZ SING N N 1
3CT CE1 CZ DOUB Y N 2
3CT CE1 CD1 SING Y N 3
3CT CZ CE2 SING Y N 4
3CT CD1 CG DOUB Y N 5
3CT CE2 CD2 DOUB Y N 6
3CT CE2 CL SING N N 7
3CT CG CD2 SING Y N 8
3CT CG CB SING N N 9
3CT CB CA SING N N 10
3CT N CA SING N N 11
3CT CA C SING N N 12
3CT C O DOUB N N 13
3CT C OXT SING N N 14
3CT N H SING N N 15
3CT N H2 SING N N 16
3CT CA HA SING N N 17
3CT CB HB2 SING N N 18
3CT CB HB3 SING N N 19
3CT CD2 HD2 SING N N 20
3CT OH HH SING N N 21
3CT CE1 HE1 SING N N 22
3CT CD1 HD1 SING N N 23
3CT OXT HXT SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3CT SMILES ACDLabs 12.01 Clc1cc(ccc1O)CC(C(=O)O)N
3CT InChI InChI 1.03 InChI=1S/C9H10ClNO3/c10-6-3-5(1-2-8(6)12)4-7(11)9(13)14/h1-3,7,12H,4,11H2,(H,13,14)/t7-/m0/s1
3CT InChIKey InChI 1.03 ACWBBAGYTKWBCD-ZETCQYMHSA-N
3CT SMILES_CANONICAL CACTVS 3.385 N[C@@H](Cc1ccc(O)c(Cl)c1)C(O)=O
3CT SMILES CACTVS 3.385 N[CH](Cc1ccc(O)c(Cl)c1)C(O)=O
3CT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc(c(cc1C[C@@H](C(=O)O)N)Cl)O
3CT SMILES "OpenEye OEToolkits" 1.7.6 c1cc(c(cc1CC(C(=O)O)N)Cl)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3CT "SYSTEMATIC NAME" ACDLabs 12.01 3-chloro-L-tyrosine
3CT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-(3-chloranyl-4-oxidanyl-phenyl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3CT 'Create component' 2013-12-18 PDBJ
3CT 'Initial release' 2015-08-19 RCSB
3CT 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3CT N N 8.196 1.268 1
3CT CA C 6.897 2.018 2
3CT CB C 5.598 1.268 3
3CT CG C 5.598 -0.233 4
3CT CD2 C 4.299 -0.983 5
3CT CE2 C 4.299 -2.482 6
3CT CL Cl 3.000 -3.232 7
3CT CZ C 5.598 -3.232 8
3CT OH O 5.598 -4.732 9
3CT CE1 C 6.897 -2.482 10
3CT CD1 C 6.897 -0.983 11
3CT C C 6.897 3.518 12
3CT O O 8.196 4.268 13
3CT OXT O 5.598 4.268 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3CT OH CZ SINGLE NONE 1
3CT CE1 CZ DOUBLE NONE 2
3CT CE1 CD1 SINGLE NONE 3
3CT CZ CE2 SINGLE NONE 4
3CT CD1 CG DOUBLE NONE 5
3CT CE2 CD2 DOUBLE NONE 6
3CT CE2 CL SINGLE NONE 7
3CT CG CD2 SINGLE NONE 8
3CT CG CB SINGLE NONE 9
3CT CB CA SINGLE NONE 10
3CT CA N SINGLE BEGINWEDGE 11
3CT CA C SINGLE NONE 12
3CT C O DOUBLE NONE 13
3CT C OXT SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3CT MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3CT peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
3CT phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3CT CG S1 1
3CT CD2 S1 1
3CT CE2 S1 1
3CT CZ S1 1
3CT CE1 S1 1
3CT CD1 S1 1
3CT O F1 1
3CT C F1 1
3CT CA F1 1
3CT N F1 1
3CT CG F2 1
3CT CD1 F2 1
3CT CE1 F2 1
3CT CZ F2 1
3CT CE2 F2 1
3CT CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3CT
_pdbe_chem_comp_rdkit_properties.exactmw 215.035
_pdbe_chem_comp_rdkit_properties.amw 215.636
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 100.259
_pdbe_chem_comp_rdkit_properties.tpsa 83.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.483
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.556
_pdbe_chem_comp_rdkit_properties.chi0v 7.306
_pdbe_chem_comp_rdkit_properties.chi1v 3.653
_pdbe_chem_comp_rdkit_properties.chi2v 1.438
_pdbe_chem_comp_rdkit_properties.chi3v 1.438
_pdbe_chem_comp_rdkit_properties.chi4v 0.746
_pdbe_chem_comp_rdkit_properties.chi0n 16.550
_pdbe_chem_comp_rdkit_properties.chi1n 7.986
_pdbe_chem_comp_rdkit_properties.chi2n 1.172
_pdbe_chem_comp_rdkit_properties.chi3n 1.172
_pdbe_chem_comp_rdkit_properties.chi4n 0.604
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.260
_pdbe_chem_comp_rdkit_properties.kappa1 3.396
_pdbe_chem_comp_rdkit_properties.kappa2 4.303
_pdbe_chem_comp_rdkit_properties.kappa3 2.615
_pdbe_chem_comp_rdkit_properties.Phi 1.044
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3CT UniChem ChEMBL CHEMBL3808682
3CT UniChem PDBe 3CT
3CT UniChem ChEBI 189422
3CT UniChem ChEBI 53678
3CT UniChem ZINC ZINC000000402813
3CT UniChem eMolecules 515969
3CT UniChem fdasrs SY44C9MINA
3CT UniChem NMRShiftDB 60026059
3CT UniChem Nikkaji J278.826H
3CT UniChem MetaboLights MTBLC189422
3CT UniChem MetaboLights MTBLC53678
3CT UniChem BRENDA 106570
3CT UniChem BRENDA 20610
3CT UniChem BRENDA 34347
3CT UniChem BRENDA 9752
3CT UniChem ChemicalBook CB7777178
3CT UniChem MedChemExpress HY-W041171
3CT UniChem 'Probes And Drugs' PD099448
3CT UniChem SureChEMBL SCHEMBL28512
3CT UniChem PubChem 110992
3CT UniChem PubChem 6951085
3CT UniChem Mcule MCULE-1164805788
3CT UniChem ACTor 7423-93-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3CT N -1.521 0.092 -1.548 ETKDGv3 1
3CT CA -1.835 -0.436 -0.218 ETKDGv3 2
3CT CB -1.025 0.300 0.863 ETKDGv3 3
3CT CG 0.456 0.095 0.674 ETKDGv3 4
3CT CD2 1.249 1.086 -0.095 ETKDGv3 5
3CT CE2 2.561 0.898 -0.298 ETKDGv3 6
3CT CL 3.465 2.094 -1.215 ETKDGv3 7
3CT CZ 3.228 -0.316 0.247 ETKDGv3 8
3CT OH 4.590 -0.542 0.059 ETKDGv3 9
3CT CE1 2.508 -1.213 0.934 ETKDGv3 10
3CT CD1 1.063 -1.005 1.152 ETKDGv3 11
3CT C -3.310 -0.317 0.063 ETKDGv3 12
3CT O -3.998 -1.352 0.272 ETKDGv3 13
3CT OXT -3.917 0.936 0.094 ETKDGv3 14
3CT H -1.838 1.087 -1.614 ETKDGv3 15
3CT H2 -2.055 -0.456 -2.261 ETKDGv3 16
3CT HA -1.555 -1.514 -0.192 ETKDGv3 17
3CT HB2 -1.258 1.388 0.838 ETKDGv3 18
3CT HB3 -1.323 -0.071 1.869 ETKDGv3 19
3CT HD2 0.761 1.966 -0.495 ETKDGv3 20
3CT HH 5.179 0.104 -0.452 ETKDGv3 21
3CT HE1 2.983 -2.101 1.333 ETKDGv3 22
3CT HD1 0.500 -1.752 1.699 ETKDGv3 23
3CT HXT -4.908 1.028 0.282 ETKDGv3 24
#