data_3EF
#
_chem_comp.id 3EF
_chem_comp.name
N-{(2S)-3-[(S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}-2-phenylethyl](hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-tyrosine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H38 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-10-08
_chem_comp.pdbx_modified_date 2013-12-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 711.697
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3EF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CA5
_chem_comp.pdbx_subcomponent_list "PHQ PPH 1JK TYR"
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3EF OAB OAB O 0 1 N N N N N N 14.530 -5.231 -15.687 4.949 -0.032 -1.655 OAB PHQ 1
3EF CAH CAH C 0 1 Y N N N N N 13.972 1.538 -14.573 9.860 3.934 1.021 CAH PHQ 2
3EF CAK CAK C 0 1 Y N N N N N 13.948 0.672 -13.480 8.688 4.506 0.563 CAK PHQ 3
3EF CAL CAL C 0 1 Y N N N N N 14.262 1.035 -15.835 10.090 2.584 0.832 CAL PHQ 4
3EF CAQ CAQ C 0 1 Y N N N N N 14.201 -0.694 -13.650 7.743 3.727 -0.078 CAQ PHQ 5
3EF CAR CAR C 0 1 Y N N N N N 14.524 -0.333 -16.007 9.148 1.806 0.185 CAR PHQ 6
3EF CBB CBB C 0 1 N N N N N N 14.766 -2.590 -15.090 6.944 1.528 -0.967 CBB PHQ 7
3EF OBJ OBJ O 0 1 N N N N N N 13.874 -3.098 -16.118 6.022 0.973 0.007 OBJ PHQ 8
3EF CBM CBM C 0 1 N N N N N N 13.875 -4.428 -16.371 5.036 0.185 -0.463 CBM PHQ 9
3EF CBP CBP C 0 1 Y N N N N N 14.498 -1.204 -14.915 7.970 2.376 -0.262 CBP PHQ 10
3EF OAD OAD O 0 1 N N N N N N 13.585 -5.504 -20.328 1.126 -0.008 1.311 O1 PPH 11
3EF PBY PBY P 0 1 N N N N N N 14.067 -6.424 -19.270 1.497 -0.303 -0.091 P1 PPH 12
3EF OAG OAG O 0 1 N N N N N N 15.461 -6.218 -18.809 1.661 1.076 -0.905 O2 PPH 13
3EF CBX CBX C 0 1 N N R N N N 13.001 -6.255 -17.798 3.074 -1.219 -0.123 C1 PPH 14
3EF NBI NBI N 0 1 N N N N N N 13.140 -4.844 -17.408 4.146 -0.362 0.389 N1 PPH 15
3EF CBE CBE C 0 1 N N N N N N 11.502 -6.510 -18.056 2.956 -2.467 0.754 C2 PPH 16
3EF CBQ CBQ C 0 1 Y N N N N N 10.754 -6.327 -16.856 4.214 -3.288 0.630 C3 PPH 17
3EF CAS CAS C 0 1 Y N N N N N 10.519 -7.410 -16.007 5.303 -3.009 1.435 C4 PPH 18
3EF CAM CAM C 0 1 Y N N N N N 9.794 -7.259 -14.818 6.457 -3.762 1.321 C5 PPH 19
3EF CAI CAI C 0 1 Y N N N N N 9.302 -5.997 -14.456 6.521 -4.794 0.403 C6 PPH 20
3EF CAN CAN C 0 1 Y N N N N N 9.548 -4.891 -15.284 5.432 -5.073 -0.401 C7 PPH 21
3EF CAT CAT C 0 1 Y N N N N N 10.260 -5.061 -16.480 4.277 -4.323 -0.284 C8 PPH 22
3EF OAC OAC O 0 1 N N N N N N 11.893 -8.126 -21.585 -2.009 -2.725 -1.314 OAC 1JK 23
3EF CAJ CAJ C 0 1 Y N N N N N 16.437 -13.220 -28.155 -6.140 5.844 1.218 CAJ 1JK 24
3EF CAO CAO C 0 1 Y N N N N N 16.923 -11.906 -28.155 -6.803 5.042 0.307 CAO 1JK 25
3EF CAP CAP C 0 1 Y N N N N N 15.775 -13.713 -27.026 -4.798 5.635 1.482 CAP 1JK 26
3EF CAU CAU C 0 1 Y N N N N N 16.742 -11.091 -27.029 -6.128 4.028 -0.343 CAU 1JK 27
3EF CAV CAV C 0 1 Y N N N N N 15.598 -12.888 -25.905 -4.115 4.621 0.842 CAV 1JK 28
3EF CBA CBA C 0 1 Y N N N N N 15.161 -10.964 -23.726 -2.675 2.379 -0.620 CBA 1JK 29
3EF CBC CBC C 0 1 N N N N N N 14.718 -9.726 -21.510 -1.230 0.566 -1.695 CBC 1JK 30
3EF CBF CBF C 0 1 N N N N N N 13.933 -8.123 -19.802 0.192 -1.314 -0.865 CBF 1JK 31
3EF NBG NBG N 0 1 Y N N N N N 16.646 -9.663 -24.663 -4.534 1.888 -1.659 NBG 1JK 32
3EF OBK OBK O 0 1 Y N N N N N 16.305 -9.077 -23.392 -3.689 1.117 -2.050 OBK 1JK 33
3EF CBN CBN C 0 1 N N N N N N 13.014 -8.025 -22.093 -2.269 -1.580 -1.012 CBN 1JK 34
3EF CBS CBS C 0 1 Y N N N N N 15.387 -9.936 -22.878 -2.504 1.335 -1.463 CBS 1JK 35
3EF CBT CBT C 0 1 Y N N N N N 16.063 -11.568 -25.899 -4.777 3.814 -0.081 CBT 1JK 36
3EF CBU CBU C 0 1 Y N N N N N 15.931 -10.772 -24.808 -4.047 2.725 -0.777 CBU 1JK 37
3EF CBV CBV C 0 1 N N S N N N 14.285 -8.259 -21.281 -1.156 -0.607 -0.715 CBV 1JK 38
3EF N N N 0 1 N N N N N N 13.222 -7.732 -23.380 -3.553 -1.176 -0.942 N TYR 39
3EF CA CA C 0 1 N N S N N N 12.102 -7.579 -24.300 -4.634 -2.122 -1.230 CA TYR 40
3EF C C C 0 1 N N N N N N 11.514 -8.980 -24.618 -4.880 -2.165 -2.716 C TYR 41
3EF O O O 0 1 N N N N N N 10.499 -9.012 -25.334 -4.220 -1.477 -3.458 O TYR 42
3EF CB CB C 0 1 N N N N N N 12.537 -6.853 -25.585 -5.910 -1.671 -0.515 CB TYR 43
3EF CG CG C 0 1 Y N N N N N 13.799 -7.077 -26.140 -5.703 -1.745 0.976 CG TYR 44
3EF CD1 CD1 C 0 1 Y N N N N N 13.942 -7.962 -27.213 -6.002 -2.910 1.657 CD1 TYR 45
3EF CD2 CD2 C 0 1 Y N N N N N 14.921 -6.374 -25.666 -5.208 -0.649 1.659 CD2 TYR 46
3EF CE1 CE1 C 0 1 Y N N N N N 15.203 -8.165 -27.792 -5.812 -2.981 3.024 CE1 TYR 47
3EF CE2 CE2 C 0 1 Y N N N N N 16.177 -6.578 -26.247 -5.017 -0.715 3.026 CE2 TYR 48
3EF CZ CZ C 0 1 Y N N N N N 16.320 -7.469 -27.311 -5.321 -1.881 3.713 CZ TYR 49
3EF OH OH O 0 1 N N N N N N 17.549 -7.661 -27.888 -5.134 -1.948 5.057 OH TYR 50
3EF OXT OXT O 0 1 N N N N N N 12.067 -9.992 -24.100 -5.833 -2.968 -3.215 OXT TYR 51
3EF HAH HAH H 0 1 N N N N N N 13.767 2.590 -14.439 10.598 4.543 1.523 HAH PHQ 52
3EF HAK HAK H 0 1 N N N N N N 13.733 1.058 -12.495 8.510 5.562 0.707 HAK PHQ 53
3EF HAL HAL H 0 1 N N N N N N 14.286 1.699 -16.687 11.006 2.137 1.190 HAL PHQ 54
3EF HAQ HAQ H 0 1 N N N N N N 14.166 -1.357 -12.798 6.827 4.174 -0.436 HAQ PHQ 55
3EF HAR HAR H 0 1 N N N N N N 14.748 -0.716 -16.992 9.328 0.752 0.037 HAR PHQ 56
3EF HBB HBB H 0 1 N N N N N N 14.589 -3.126 -14.146 7.444 0.717 -1.497 HBB PHQ 57
3EF HBBA HBBA H 0 0 N N N N N N 15.812 -2.731 -15.401 6.393 2.142 -1.680 HBBA PHQ 58
3EF HOAG HOAG H 0 0 N N N N N N 15.849 -5.493 -19.286 1.905 0.959 -1.834 H1 PPH 59
3EF HBX HBX H 0 1 N N N N N N 13.389 -6.936 -17.027 3.302 -1.514 -1.147 H2 PPH 60
3EF HNBI HNBI H 0 0 N N N N N N 12.657 -4.156 -17.949 4.216 -0.188 1.341 H4 PPH 61
3EF HBE HBE H 0 1 N N N N N N 11.140 -5.806 -18.820 2.817 -2.169 1.793 H5 PPH 62
3EF HBEA HBEA H 0 0 N N N N N N 11.366 -7.541 -18.414 2.102 -3.060 0.428 H6 PPH 63
3EF HAS HAS H 0 1 N N N N N N 10.904 -8.384 -16.272 5.253 -2.203 2.151 H7 PPH 64
3EF HAM HAM H 0 1 N N N N N N 9.614 -8.113 -14.182 7.308 -3.544 1.949 H8 PPH 65
3EF HAI HAI H 0 1 N N N N N N 8.736 -5.877 -13.544 7.423 -5.382 0.315 H9 PPH 66
3EF HAN HAN H 0 1 N N N N N N 9.190 -3.912 -15.001 5.483 -5.879 -1.118 H10 PPH 67
3EF HAT HAT H 0 1 N N N N N N 10.432 -4.210 -17.122 3.424 -4.543 -0.909 H11 PPH 68
3EF HAJ HAJ H 0 1 N N N N N N 16.573 -13.849 -29.022 -6.670 6.639 1.721 HAJ 1JK 69
3EF HAO HAO H 0 1 N N N N N N 17.437 -11.521 -29.023 -7.850 5.209 0.104 HAO 1JK 70
3EF HAP HAP H 0 1 N N N N N N 15.401 -14.726 -27.017 -4.284 6.267 2.192 HAP 1JK 71
3EF HAU HAU H 0 1 N N N N N N 17.130 -10.083 -27.032 -6.647 3.402 -1.054 HAU 1JK 72
3EF HAV HAV H 0 1 N N N N N N 15.095 -13.278 -25.033 -3.068 4.459 1.049 HAV 1JK 73
3EF HBAA HBAA H 0 0 N N N N N N 14.484 -11.789 -23.562 -1.942 2.841 0.025 HBAA 1JK 74
3EF HBC HBC H 0 1 N N N N N N 13.828 -10.370 -21.450 -1.215 0.187 -2.717 HBC 1JK 75
3EF HBCA HBCA H 0 0 N N N N N N 15.430 -10.011 -20.722 -0.375 1.224 -1.538 HBCA 1JK 76
3EF HBF HBF H 0 1 N N N N N N 12.901 -8.470 -19.644 0.416 -1.448 -1.923 HBF 1JK 77
3EF HBFA HBFA H 0 0 N N N N N N 14.623 -8.742 -19.209 0.149 -2.287 -0.377 HBFA 1JK 78
3EF HBV HBV H 0 1 N N N N N N 15.083 -7.559 -21.571 -1.260 -0.236 0.305 HBV 1JK 79
3EF HN HN H 0 1 N N N N N N 14.157 -7.616 -23.716 -3.761 -0.260 -0.700 H2 TYR 80
3EF HA HA H 0 1 N N N N N N 11.315 -6.981 -23.817 -4.352 -3.114 -0.879 HA TYR 81
3EF HB HB H 0 1 N N N N N N 11.802 -7.118 -26.359 -6.142 -0.645 -0.799 HB2 TYR 82
3EF HBA HBA H 0 1 N N N N N N 12.474 -5.775 -25.373 -6.735 -2.323 -0.800 HB3 TYR 83
3EF HD1 HD1 H 0 1 N N N N N N 13.081 -8.489 -27.596 -6.384 -3.766 1.121 HD1 TYR 84
3EF HD2 HD2 H 0 1 N N N N N N 14.813 -5.674 -24.851 -4.971 0.258 1.124 HD2 TYR 85
3EF HE1 HE1 H 0 1 N N N N N N 15.314 -8.860 -28.611 -6.050 -3.890 3.556 HE1 TYR 86
3EF HE2 HE2 H 0 1 N N N N N N 17.038 -6.045 -25.871 -4.631 0.141 3.559 HE2 TYR 87
3EF HOH HOH H 0 1 N N N N N N 18.194 -7.119 -27.449 -4.255 -2.254 5.317 HH TYR 88
3EF HOXT HOXT H 0 0 N N N N N N 11.587 -10.775 -24.343 -5.954 -2.962 -4.175 HXT TYR 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3EF O C DOUB N N 1
3EF C CA SING N N 2
3EF C OXT SING N N 3
3EF CA N SING N N 4
3EF N CBN SING N N 5
3EF N HN SING N N 6
3EF CB CA SING N N 7
3EF CA HA SING N N 8
3EF CG CB SING N N 9
3EF CB HB SING N N 10
3EF CB HBA SING N N 11
3EF CD1 CG DOUB Y N 12
3EF CG CD2 SING Y N 13
3EF OH CZ SING N N 14
3EF OH HOH SING N N 15
3EF CE1 CZ DOUB Y N 16
3EF CZ CE2 SING Y N 17
3EF CBM OAB DOUB N N 18
3EF CBN OAC DOUB N N 19
3EF OAD PBY DOUB N N 20
3EF PBY OAG SING N N 21
3EF OAG HOAG SING N N 22
3EF CAL CAH DOUB Y N 23
3EF CAH CAK SING Y N 24
3EF CAH HAH SING N N 25
3EF CAN CAI DOUB Y N 26
3EF CAM CAI SING Y N 27
3EF CAI HAI SING N N 28
3EF CAO CAJ DOUB Y N 29
3EF CAJ CAP SING Y N 30
3EF CAJ HAJ SING N N 31
3EF CAQ CAK DOUB Y N 32
3EF CAK HAK SING N N 33
3EF CAR CAL SING Y N 34
3EF CAL HAL SING N N 35
3EF CAS CAM DOUB Y N 36
3EF CAM HAM SING N N 37
3EF CAT CAN SING Y N 38
3EF CAN HAN SING N N 39
3EF CAO CAU SING Y N 40
3EF CAO HAO SING N N 41
3EF CAP CAV DOUB Y N 42
3EF CAP HAP SING N N 43
3EF CBP CAQ SING Y N 44
3EF CAQ HAQ SING N N 45
3EF CAR CBP DOUB Y N 46
3EF CAR HAR SING N N 47
3EF CBQ CAS SING Y N 48
3EF CAS HAS SING N N 49
3EF CBQ CAT DOUB Y N 50
3EF CAT HAT SING N N 51
3EF CAU CBT DOUB Y N 52
3EF CAU HAU SING N N 53
3EF CAV CBT SING Y N 54
3EF CAV HAV SING N N 55
3EF CBU CBA SING Y N 56
3EF CBA CBS DOUB Y N 57
3EF CBA HBAA SING N N 58
3EF OBJ CBB SING N N 59
3EF CBB CBP SING N N 60
3EF CBB HBB SING N N 61
3EF CBB HBBA SING N N 62
3EF CBS CBC SING N N 63
3EF CBC CBV SING N N 64
3EF CBC HBC SING N N 65
3EF CBC HBCA SING N N 66
3EF CBE CBX SING N N 67
3EF CBE CBQ SING N N 68
3EF CBE HBE SING N N 69
3EF CBE HBEA SING N N 70
3EF CBV CBF SING N N 71
3EF CBF PBY SING N N 72
3EF CBF HBF SING N N 73
3EF CBF HBFA SING N N 74
3EF CBU NBG DOUB Y N 75
3EF NBG OBK SING Y N 76
3EF CBX NBI SING N N 77
3EF NBI CBM SING N N 78
3EF NBI HNBI SING N N 79
3EF CBM OBJ SING N N 80
3EF OBK CBS SING Y N 81
3EF CBN CBV SING N N 82
3EF CBT CBU SING N N 83
3EF CBV HBV SING N N 84
3EF PBY CBX SING N N 85
3EF CBX HBX SING N N 86
3EF CE1 CD1 SING Y N 87
3EF CD1 HD1 SING N N 88
3EF CE2 CD2 DOUB Y N 89
3EF CD2 HD2 SING N N 90
3EF CE1 HE1 SING N N 91
3EF CE2 HE2 SING N N 92
3EF OXT HOXT SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3EF SMILES ACDLabs 12.01 O=C(O)C(NC(=O)C(CP(=O)(O)C(NC(=O)OCc1ccccc1)Cc2ccccc2)Cc4onc(c3ccccc3)c4)Cc5ccc(O)cc5
3EF InChI InChI 1.03 InChI=1S/C38H38N3O9P/c42-31-18-16-27(17-19-31)20-34(37(44)45)39-36(43)30(22-32-23-33(41-50-32)29-14-8-3-9-15-29)25-51(47,48)35(21-26-10-4-1-5-11-26)40-38(46)49-24-28-12-6-2-7-13-28/h1-19,23,30,34-35,42H,20-22,24-25H2,(H,39,43)(H,40,46)(H,44,45)(H,47,48)/t30-,34+,35-/m1/s1
3EF InChIKey InChI 1.03 ZPFSKFCSVXPMBD-JHOVWCEZSA-N
3EF SMILES_CANONICAL CACTVS 3.385 OC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](Cc2onc(c2)c3ccccc3)C[P](O)(=O)[C@H](Cc4ccccc4)NC(=O)OCc5ccccc5
3EF SMILES CACTVS 3.385 OC(=O)[CH](Cc1ccc(O)cc1)NC(=O)[CH](Cc2onc(c2)c3ccccc3)C[P](O)(=O)[CH](Cc4ccccc4)NC(=O)OCc5ccccc5
3EF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C[C@H](NC(=O)OCc2ccccc2)P(=O)(C[C@@H](Cc3cc(no3)c4ccccc4)C(=O)N[C@@H](Cc5ccc(cc5)O)C(=O)O)O
3EF SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CC(NC(=O)OCc2ccccc2)P(=O)(CC(Cc3cc(no3)c4ccccc4)C(=O)NC(Cc5ccc(cc5)O)C(=O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3EF "SYSTEMATIC NAME" ACDLabs 12.01 N-{(2S)-3-[(S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}-2-phenylethyl](hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-tyrosine
3EF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-3-(4-hydroxyphenyl)-2-[[(2S)-2-[[oxidanyl-[(1R)-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]methyl]-3-(3-phenyl-1,2-oxazol-5-yl)propanoyl]amino]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3EF 'Create component' 2013-10-08 EBI
3EF 'Initial release' 2013-12-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3EF OAB O 10.794 3.555 1
3EF CAH C 17.290 7.305 2
3EF CAK C 17.290 5.805 3
3EF CAL C 15.990 8.055 4
3EF CAQ C 15.990 5.055 5
3EF CAR C 14.691 7.305 6
3EF CBB C 13.392 5.055 7
3EF OBJ O 13.392 3.555 8
3EF CBM C 12.093 2.805 9
3EF CBP C 14.691 5.805 10
3EF OAD O 10.245 2.604 11
3EF PBY P 9.495 1.305 12
3EF OAG O 8.745 0.006 13
3EF CBX C 10.794 0.555 14
3EF NBI N 12.093 1.305 15
3EF CBE C 10.794 -0.945 16
3EF CBQ C 12.093 -1.695 17
3EF CAS C 12.093 -3.195 18
3EF CAM C 13.392 -3.945 19
3EF CAI C 14.691 -3.195 20
3EF CAN C 14.691 -1.695 21
3EF CAT C 13.392 -0.945 22
3EF OAC O 8.196 -0.945 23
3EF CAJ C 8.993 9.504 24
3EF CAO C 9.603 8.133 25
3EF CAP C 7.501 9.660 26
3EF CAU C 8.722 6.920 27
3EF CAV C 6.620 8.447 28
3EF CBA C 6.812 4.436 29
3EF CBC C 5.598 2.055 30
3EF CBF C 8.196 2.055 31
3EF NBG N 4.848 5.863 32
3EF OBK O 4.385 4.436 33
3EF CBN C 6.897 -0.195 34
3EF CBS C 5.598 3.555 35
3EF CBT C 7.230 7.076 36
3EF CBU C 6.348 5.863 37
3EF CBV C 6.897 1.305 38
3EF N N 5.598 -0.945 39
3EF CA C 5.598 -2.445 40
3EF C C 6.897 -3.195 41
3EF O O 8.196 -2.445 42
3EF CB C 4.299 -3.195 43
3EF CG C 4.299 -4.695 44
3EF CD1 C 3.000 -5.445 45
3EF CD2 C 5.598 -5.445 46
3EF CE1 C 3.000 -6.945 47
3EF CE2 C 5.598 -6.945 48
3EF CZ C 4.299 -7.695 49
3EF OH O 4.299 -9.195 50
3EF OXT O 6.897 -4.695 51
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3EF O C DOUBLE NONE 1
3EF C CA SINGLE NONE 2
3EF C OXT SINGLE NONE 3
3EF CA N SINGLE NONE 4
3EF N CBN SINGLE NONE 5
3EF CA CB SINGLE BEGINDASH 6
3EF CG CB SINGLE NONE 7
3EF CD1 CG DOUBLE NONE 8
3EF CG CD2 SINGLE NONE 9
3EF OH CZ SINGLE NONE 10
3EF CE1 CZ DOUBLE NONE 11
3EF CZ CE2 SINGLE NONE 12
3EF CBM OAB DOUBLE NONE 13
3EF CBN OAC DOUBLE NONE 14
3EF OAD PBY DOUBLE NONE 15
3EF PBY OAG SINGLE BEGINDASH 16
3EF CAL CAH DOUBLE NONE 17
3EF CAH CAK SINGLE NONE 18
3EF CAN CAI DOUBLE NONE 19
3EF CAM CAI SINGLE NONE 20
3EF CAO CAJ DOUBLE NONE 21
3EF CAJ CAP SINGLE NONE 22
3EF CAQ CAK DOUBLE NONE 23
3EF CAR CAL SINGLE NONE 24
3EF CAS CAM DOUBLE NONE 25
3EF CAT CAN SINGLE NONE 26
3EF CAO CAU SINGLE NONE 27
3EF CAP CAV DOUBLE NONE 28
3EF CBP CAQ SINGLE NONE 29
3EF CAR CBP DOUBLE NONE 30
3EF CBQ CAS SINGLE NONE 31
3EF CBQ CAT DOUBLE NONE 32
3EF CAU CBT DOUBLE NONE 33
3EF CAV CBT SINGLE NONE 34
3EF CBU CBA SINGLE NONE 35
3EF CBA CBS DOUBLE NONE 36
3EF OBJ CBB SINGLE NONE 37
3EF CBB CBP SINGLE NONE 38
3EF CBS CBC SINGLE NONE 39
3EF CBV CBC SINGLE BEGINDASH 40
3EF CBX CBE SINGLE BEGINWEDGE 41
3EF CBE CBQ SINGLE NONE 42
3EF CBV CBF SINGLE NONE 43
3EF CBF PBY SINGLE NONE 44
3EF CBU NBG DOUBLE NONE 45
3EF NBG OBK SINGLE NONE 46
3EF CBX NBI SINGLE NONE 47
3EF NBI CBM SINGLE NONE 48
3EF CBM OBJ SINGLE NONE 49
3EF OBK CBS SINGLE NONE 50
3EF CBN CBV SINGLE NONE 51
3EF CBT CBU SINGLE NONE 52
3EF PBY CBX SINGLE NONE 53
3EF CE1 CD1 SINGLE NONE 54
3EF CE2 CD2 DOUBLE NONE 55
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3EF MurckoScaffold S1 scaffold 'O=C(N[C@@H](Cc1ccccc1)[PH](=O)C[C@@H](Cc1cc(-c2ccccc2)no1)C(=O)NCCc1ccccc1)OCc1ccccc1' InChI=1S/C37H38N3O5P/c41-36(38-22-21-28-13-5-1-6-14-28)32(24-33-25-34(40-45-33)31-19-11-4-12-20-31)27-46(43)35(23-29-15-7-2-8-16-29)39-37(42)44-26-30-17-9-3-10-18-30/h1-20,25,32,35,46H,21-24,26-27H2,(H,38,41)(H,39,42)/t32-,35-/m1/s1 DZTKUESRXAFZAC-FHPVIJFVSA-N
3EF amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
3EF isoxazole F2 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
3EF peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
3EF phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3EF OAB S1 1
3EF CAH S1 1
3EF CAK S1 1
3EF CAL S1 1
3EF CAQ S1 1
3EF CAR S1 1
3EF CBB S1 1
3EF OBJ S1 1
3EF CBM S1 1
3EF CBP S1 1
3EF OAD S1 1
3EF PBY S1 1
3EF CBX S1 1
3EF NBI S1 1
3EF CBE S1 1
3EF CBQ S1 1
3EF CAS S1 1
3EF CAM S1 1
3EF CAI S1 1
3EF CAN S1 1
3EF CAT S1 1
3EF OAC S1 1
3EF CAJ S1 1
3EF CAO S1 1
3EF CAP S1 1
3EF CAU S1 1
3EF CAV S1 1
3EF CBA S1 1
3EF CBC S1 1
3EF CBF S1 1
3EF NBG S1 1
3EF OBK S1 1
3EF CBN S1 1
3EF CBS S1 1
3EF CBT S1 1
3EF CBU S1 1
3EF CBV S1 1
3EF N S1 1
3EF CA S1 1
3EF CB S1 1
3EF CG S1 1
3EF CD1 S1 1
3EF CD2 S1 1
3EF CE1 S1 1
3EF CE2 S1 1
3EF CZ S1 1
3EF N F1 1
3EF CBN F1 1
3EF OAC F1 1
3EF CBV F1 1
3EF CBS F2 1
3EF CBA F2 1
3EF CBU F2 1
3EF NBG F2 1
3EF OBK F2 1
3EF O F3 1
3EF C F3 1
3EF CA F3 1
3EF N F3 1
3EF CAH F4 1
3EF CAL F4 1
3EF CAR F4 1
3EF CBP F4 1
3EF CAQ F4 1
3EF CAK F4 1
3EF CBQ F4 2
3EF CAS F4 2
3EF CAM F4 2
3EF CAI F4 2
3EF CAN F4 2
3EF CAT F4 2
3EF CAJ F4 3
3EF CAO F4 3
3EF CAU F4 3
3EF CBT F4 3
3EF CAV F4 3
3EF CAP F4 3
3EF CG F4 4
3EF CD1 F4 4
3EF CE1 F4 4
3EF CZ F4 4
3EF CE2 F4 4
3EF CD2 F4 4
#
_pdbe_chem_comp_rdkit_properties.comp_id 3EF
_pdbe_chem_comp_rdkit_properties.exactmw 711.235
_pdbe_chem_comp_rdkit_properties.amw 711.708
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 51
_pdbe_chem_comp_rdkit_properties.NumAtoms 89
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.211
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 347.861
_pdbe_chem_comp_rdkit_properties.tpsa 188.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.722
_pdbe_chem_comp_rdkit_properties.CrippenMR 185.903
_pdbe_chem_comp_rdkit_properties.chi0v 25.358
_pdbe_chem_comp_rdkit_properties.chi1v 14.621
_pdbe_chem_comp_rdkit_properties.chi2v 6.401
_pdbe_chem_comp_rdkit_properties.chi3v 6.401
_pdbe_chem_comp_rdkit_properties.chi4v 4.103
_pdbe_chem_comp_rdkit_properties.chi0n 62.463
_pdbe_chem_comp_rdkit_properties.chi1n 31.615
_pdbe_chem_comp_rdkit_properties.chi2n 5.114
_pdbe_chem_comp_rdkit_properties.chi3n 5.114
_pdbe_chem_comp_rdkit_properties.chi4n 3.079
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.710
_pdbe_chem_comp_rdkit_properties.kappa1 11.660
_pdbe_chem_comp_rdkit_properties.kappa2 17.288
_pdbe_chem_comp_rdkit_properties.kappa3 10.889
_pdbe_chem_comp_rdkit_properties.Phi 3.952
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3EF UniChem ChEMBL CHEMBL570732
3EF UniChem PDBe 3EF
3EF UniChem ZINC ZINC000049695103
3EF UniChem 'PubChem TPHARMA' 87553837
3EF UniChem BindingDb 50303319
3EF UniChem BRENDA 201344
3EF UniChem BRENDA 27360
3EF UniChem BRENDA 27472
3EF UniChem PubChem 44626711
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3EF OAB 3.520 2.951 -1.322 ETKDGv3 1
3EF CAH 10.337 3.766 0.308 ETKDGv3 2
3EF CAK 9.922 3.611 -1.101 ETKDGv3 3
3EF CAL 9.414 3.915 1.265 ETKDGv3 4
3EF CAQ 8.622 3.625 -1.424 ETKDGv3 5
3EF CAR 7.978 3.926 0.914 ETKDGv3 6
3EF CBB 6.139 3.772 -0.733 ETKDGv3 7
3EF OBJ 5.671 2.429 -0.666 ETKDGv3 8
3EF CBM 4.357 2.072 -0.979 ETKDGv3 9
3EF CBP 7.594 3.806 -0.369 ETKDGv3 10
3EF OAD 3.344 -2.389 -0.953 ETKDGv3 11
3EF PBY 2.291 -1.397 -0.513 ETKDGv3 12
3EF OAG 2.400 -1.233 1.169 ETKDGv3 13
3EF CBX 2.637 0.228 -1.293 ETKDGv3 14
3EF NBI 3.974 0.693 -0.912 ETKDGv3 15
3EF CBE 2.475 0.196 -2.830 ETKDGv3 16
3EF CBQ 3.521 -0.634 -3.539 ETKDGv3 17
3EF CAS 3.204 -2.019 -3.972 ETKDGv3 18
3EF CAM 4.128 -2.761 -4.593 ETKDGv3 19
3EF CAI 5.469 -2.203 -4.860 ETKDGv3 20
3EF CAN 5.759 -0.952 -4.487 ETKDGv3 21
3EF CAT 4.741 -0.129 -3.801 ETKDGv3 22
3EF OAC -2.170 -2.946 -0.871 ETKDGv3 23
3EF CAJ -5.938 3.369 3.618 ETKDGv3 24
3EF CAO -4.617 3.181 3.713 ETKDGv3 25
3EF CAP -6.651 2.989 2.383 ETKDGv3 26
3EF CAU -3.869 2.587 2.584 ETKDGv3 27
3EF CAV -5.977 2.457 1.356 ETKDGv3 28
3EF CBA -2.395 1.140 0.318 ETKDGv3 29
3EF CBC -1.020 -0.181 -1.343 ETKDGv3 30
3EF CBF 0.648 -2.088 -0.933 ETKDGv3 31
3EF NBG -4.357 1.303 -0.800 ETKDGv3 32
3EF OBK -3.427 0.645 -1.567 ETKDGv3 33
3EF CBN -1.674 -2.192 0.009 ETKDGv3 34
3EF CBS -2.245 0.539 -0.853 ETKDGv3 35
3EF CBT -4.509 2.237 1.451 ETKDGv3 36
3EF CBU -3.786 1.609 0.322 ETKDGv3 37
3EF CBV -0.532 -1.268 -0.355 ETKDGv3 38
3EF N -2.218 -2.167 1.341 ETKDGv3 39
3EF CA -3.517 -2.733 1.720 ETKDGv3 40
3EF C -3.463 -4.238 1.703 ETKDGv3 41
3EF O -3.599 -4.877 0.625 ETKDGv3 42
3EF CB -4.651 -2.159 0.845 ETKDGv3 43
3EF CG -5.997 -2.319 1.503 ETKDGv3 44
3EF CD1 -6.453 -1.389 2.363 ETKDGv3 45
3EF CD2 -6.813 -3.530 1.241 ETKDGv3 46
3EF CE1 -7.763 -1.563 3.022 ETKDGv3 47
3EF CE2 -7.998 -3.687 1.844 ETKDGv3 48
3EF CZ -8.502 -2.657 2.777 ETKDGv3 49
3EF OH -9.739 -2.837 3.391 ETKDGv3 50
3EF OXT -3.221 -4.928 2.886 ETKDGv3 51
3EF HAH 11.389 3.756 0.564 ETKDGv3 52
3EF HAK 10.671 3.481 -1.872 ETKDGv3 53
3EF HAL 9.716 4.024 2.299 ETKDGv3 54
3EF HAQ 8.325 3.504 -2.458 ETKDGv3 55
3EF HAR 7.244 4.030 1.704 ETKDGv3 56
3EF HBB 6.000 4.165 -1.764 ETKDGv3 57
3EF HBBA 5.550 4.410 -0.038 ETKDGv3 58
3EF HOAG 2.055 -0.326 1.366 ETKDGv3 59
3EF HBX 1.894 0.938 -0.876 ETKDGv3 60
3EF HNBI 4.688 0.006 -0.581 ETKDGv3 61
3EF HBE 2.516 1.237 -3.218 ETKDGv3 62
3EF HBEA 1.464 -0.180 -3.090 ETKDGv3 63
3EF HAS 2.223 -2.437 -3.787 ETKDGv3 64
3EF HAM 3.895 -3.771 -4.904 ETKDGv3 65
3EF HAI 6.214 -2.807 -5.362 ETKDGv3 66
3EF HAN 6.740 -0.539 -4.685 ETKDGv3 67
3EF HAT 4.995 0.885 -3.518 ETKDGv3 68
3EF HAJ -6.486 3.801 4.446 ETKDGv3 69
3EF HAO -4.093 3.459 4.618 ETKDGv3 70
3EF HAP -7.720 3.142 2.311 ETKDGv3 71
3EF HAU -2.804 2.445 2.697 ETKDGv3 72
3EF HAV -6.516 2.179 0.459 ETKDGv3 73
3EF HBAA -1.656 1.206 1.105 ETKDGv3 74
3EF HBC -0.229 0.573 -1.508 ETKDGv3 75
3EF HBCA -1.256 -0.643 -2.326 ETKDGv3 76
3EF HBF 0.634 -3.116 -0.509 ETKDGv3 77
3EF HBFA 0.556 -2.197 -2.034 ETKDGv3 78
3EF HBV -0.191 -0.760 0.572 ETKDGv3 79
3EF HN -1.701 -1.631 2.074 ETKDGv3 80
3EF HA -3.715 -2.425 2.772 ETKDGv3 81
3EF HB -4.665 -2.637 -0.158 ETKDGv3 82
3EF HBA -4.464 -1.079 0.673 ETKDGv3 83
3EF HD1 -5.867 -0.505 2.583 ETKDGv3 84
3EF HD2 -6.453 -4.290 0.560 ETKDGv3 85
3EF HE1 -8.119 -0.801 3.704 ETKDGv3 86
3EF HE2 -8.590 -4.572 1.648 ETKDGv3 87
3EF HOH -10.119 -2.154 4.037 ETKDGv3 88
3EF HOXT -3.168 -5.939 2.897 ETKDGv3 89
#