data_3GG
#
_chem_comp.id 3GG
_chem_comp.name 1-phenyl-3-[4-(1H-tetrazol-5-yl)phenyl]urea
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H12 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-08-14
_chem_comp.pdbx_modified_date 2014-11-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 280.285
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3GG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UAI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3GG O21 O1 O 0 1 N N N N N N 10.701 -7.185 -2.430 1.667 -0.467 -0.163 O21 3GG 1
3GG C8 C1 C 0 1 N N N N N N 10.644 -8.090 -1.640 1.885 0.729 -0.156 C8 3GG 2
3GG N7 N1 N 0 1 N N N N N N 9.614 -8.943 -1.583 3.153 1.183 -0.117 N7 3GG 3
3GG C3 C2 C 0 1 Y N N N N N 8.489 -9.032 -2.429 4.215 0.282 0.025 C3 3GG 4
3GG C4 C3 C 0 1 Y N N N N N 7.310 -9.638 -1.973 5.435 0.542 -0.586 C4 3GG 5
3GG C5 C4 C 0 1 Y N N N N N 6.208 -9.788 -2.836 6.480 -0.349 -0.443 C5 3GG 6
3GG C6 C5 C 0 1 Y N N N N N 6.288 -9.382 -4.175 6.313 -1.499 0.306 C6 3GG 7
3GG C1 C6 C 0 1 Y N N N N N 7.475 -8.804 -4.641 5.100 -1.761 0.914 C1 3GG 8
3GG C2 C7 C 0 1 Y N N N N N 8.572 -8.651 -3.783 4.052 -0.871 0.781 C2 3GG 9
3GG N9 N2 N 0 1 N N N N N N 11.627 -8.347 -0.779 0.858 1.601 -0.194 N9 3GG 10
3GG C10 C8 C 0 1 Y N N N N N 12.783 -7.617 -0.609 -0.458 1.134 -0.143 C10 3GG 11
3GG C11 C9 C 0 1 Y N N N N N 13.531 -8.020 0.468 -1.428 1.865 0.533 C11 3GG 12
3GG C12 C10 C 0 1 Y N N N N N 14.728 -7.414 0.762 -2.727 1.406 0.585 C12 3GG 13
3GG C13 C11 C 0 1 Y N N N N N 15.184 -6.400 -0.037 -3.067 0.207 -0.043 C13 3GG 14
3GG C14 C12 C 0 1 Y N N N N N 14.461 -5.985 -1.172 -2.091 -0.524 -0.721 C14 3GG 15
3GG C15 C13 C 0 1 Y N N N N N 13.235 -6.601 -1.468 -0.795 -0.058 -0.774 C15 3GG 16
3GG C16 C14 C 0 1 Y N N N N N 16.471 -5.798 0.358 -4.460 -0.288 0.011 C16 3GG 17
3GG N17 N3 N 0 1 Y N N N N N 16.988 -5.876 1.640 -4.933 -1.429 -0.550 N17 3GG 18
3GG N18 N4 N 0 1 Y N N N N N 18.193 -5.136 1.516 -6.300 -1.460 -0.226 N18 3GG 19
3GG N19 N5 N 0 1 Y N N N N N 18.383 -4.702 0.314 -6.545 -0.400 0.466 N19 3GG 20
3GG N20 N6 N 0 1 Y N N N N N 17.291 -5.085 -0.492 -5.475 0.293 0.616 N20 3GG 21
3GG H1 H1 H 0 1 N N N N N N 9.647 -9.609 -0.838 3.330 2.134 -0.186 H1 3GG 22
3GG H2 H2 H 0 1 N N N N N N 7.247 -9.992 -0.954 5.565 1.440 -1.171 H2 3GG 23
3GG H3 H3 H 0 1 N N N N N N 5.292 -10.220 -2.462 7.429 -0.147 -0.918 H3 3GG 24
3GG H4 H4 H 0 1 N N N N N N 5.446 -9.513 -4.838 7.133 -2.194 0.415 H4 3GG 25
3GG H5 H5 H 0 1 N N N N N N 7.545 -8.474 -5.667 4.973 -2.661 1.498 H5 3GG 26
3GG H6 H6 H 0 1 N N N N N N 9.493 -8.236 -4.164 3.105 -1.077 1.257 H6 3GG 27
3GG H7 H7 H 0 1 N N N N N N 11.515 -9.152 -0.196 1.032 2.553 -0.256 H7 3GG 28
3GG H8 H8 H 0 1 N N N N N N 13.174 -8.825 1.093 -1.164 2.792 1.019 H8 3GG 29
3GG H9 H9 H 0 1 N N N N N N 15.305 -7.735 1.617 -3.480 1.974 1.110 H9 3GG 30
3GG H10 H10 H 0 1 N N N N N N 14.846 -5.201 -1.808 -2.352 -1.453 -1.208 H10 3GG 31
3GG H11 H11 H 0 1 N N N N N N 12.657 -6.303 -2.330 -0.040 -0.624 -1.298 H11 3GG 32
3GG H12 H12 H 0 1 N N N N N N 16.611 -6.335 2.444 -4.434 -2.083 -1.064 H12 3GG 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3GG C1 C6 DOUB Y N 1
3GG C1 C2 SING Y N 2
3GG C6 C5 SING Y N 3
3GG C2 C3 DOUB Y N 4
3GG C5 C4 DOUB Y N 5
3GG O21 C8 DOUB N N 6
3GG C3 C4 SING Y N 7
3GG C3 N7 SING N N 8
3GG C8 N7 SING N N 9
3GG C8 N9 SING N N 10
3GG C15 C14 DOUB Y N 11
3GG C15 C10 SING Y N 12
3GG C14 C13 SING Y N 13
3GG N9 C10 SING N N 14
3GG C10 C11 DOUB Y N 15
3GG N20 N19 SING Y N 16
3GG N20 C16 DOUB Y N 17
3GG C13 C16 SING N N 18
3GG C13 C12 DOUB Y N 19
3GG N19 N18 DOUB Y N 20
3GG C16 N17 SING Y N 21
3GG C11 C12 SING Y N 22
3GG N18 N17 SING Y N 23
3GG N7 H1 SING N N 24
3GG C4 H2 SING N N 25
3GG C5 H3 SING N N 26
3GG C6 H4 SING N N 27
3GG C1 H5 SING N N 28
3GG C2 H6 SING N N 29
3GG N9 H7 SING N N 30
3GG C11 H8 SING N N 31
3GG C12 H9 SING N N 32
3GG C14 H10 SING N N 33
3GG C15 H11 SING N N 34
3GG N17 H12 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3GG SMILES ACDLabs 12.01 O=C(Nc1ccccc1)Nc3ccc(c2nnnn2)cc3
3GG InChI InChI 1.03 InChI=1S/C14H12N6O/c21-14(15-11-4-2-1-3-5-11)16-12-8-6-10(7-9-12)13-17-19-20-18-13/h1-9H,(H2,15,16,21)(H,17,18,19,20)
3GG InChIKey InChI 1.03 KTIWLNFSBOCUHG-UHFFFAOYSA-N
3GG SMILES_CANONICAL CACTVS 3.385 O=C(Nc1ccccc1)Nc2ccc(cc2)c3[nH]nnn3
3GG SMILES CACTVS 3.385 O=C(Nc1ccccc1)Nc2ccc(cc2)c3[nH]nnn3
3GG SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)NC(=O)Nc2ccc(cc2)c3[nH]nnn3
3GG SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)NC(=O)Nc2ccc(cc2)c3[nH]nnn3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3GG "SYSTEMATIC NAME" ACDLabs 12.01 1-phenyl-3-[4-(1H-tetrazol-5-yl)phenyl]urea
3GG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1-phenyl-3-[4-(1H-1,2,3,4-tetrazol-5-yl)phenyl]urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3GG 'Create component' 2014-08-14 RCSB
3GG 'Modify descriptor' 2014-09-05 RCSB
3GG 'Initial release' 2014-11-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3GG O21 O 5.598 -1.905 1
3GG C8 C 6.897 -2.655 2
3GG N7 N 6.897 -4.155 3
3GG C3 C 5.598 -4.905 4
3GG C4 C 5.598 -6.405 5
3GG C5 C 4.299 -7.155 6
3GG C6 C 3.000 -6.405 7
3GG C1 C 3.000 -4.905 8
3GG C2 C 4.299 -4.155 9
3GG N9 N 8.196 -1.905 10
3GG C10 C 8.196 -0.405 11
3GG C11 C 6.897 0.345 12
3GG C12 C 6.897 1.845 13
3GG C13 C 8.196 2.595 14
3GG C14 C 9.495 1.845 15
3GG C15 C 9.495 0.345 16
3GG C16 C 8.196 4.095 17
3GG N17 N 9.410 4.976 18
3GG N18 N 8.946 6.403 19
3GG N19 N 7.446 6.403 20
3GG N20 N 6.983 4.976 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3GG C1 C6 DOUBLE NONE 1
3GG C1 C2 SINGLE NONE 2
3GG C6 C5 SINGLE NONE 3
3GG C2 C3 DOUBLE NONE 4
3GG C5 C4 DOUBLE NONE 5
3GG O21 C8 DOUBLE NONE 6
3GG C3 C4 SINGLE NONE 7
3GG C3 N7 SINGLE NONE 8
3GG C8 N7 SINGLE NONE 9
3GG C8 N9 SINGLE NONE 10
3GG C15 C14 DOUBLE NONE 11
3GG C15 C10 SINGLE NONE 12
3GG C14 C13 SINGLE NONE 13
3GG N9 C10 SINGLE NONE 14
3GG C10 C11 DOUBLE NONE 15
3GG N20 N19 SINGLE NONE 16
3GG N20 C16 DOUBLE NONE 17
3GG C13 C16 SINGLE NONE 18
3GG C13 C12 DOUBLE NONE 19
3GG N19 N18 DOUBLE NONE 20
3GG C16 N17 SINGLE NONE 21
3GG C11 C12 SINGLE NONE 22
3GG N18 N17 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3GG MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)Nc1ccc(-c2nnn[nH]2)cc1' InChI=1S/C14H12N6O/c21-14(15-11-4-2-1-3-5-11)16-12-8-6-10(7-9-12)13-17-19-20-18-13/h1-9H,(H2,15,16,21)(H,17,18,19,20) KTIWLNFSBOCUHG-UHFFFAOYSA-N
3GG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3GG O21 S1 1
3GG C8 S1 1
3GG N7 S1 1
3GG C3 S1 1
3GG C4 S1 1
3GG C5 S1 1
3GG C6 S1 1
3GG C1 S1 1
3GG C2 S1 1
3GG N9 S1 1
3GG C10 S1 1
3GG C11 S1 1
3GG C12 S1 1
3GG C13 S1 1
3GG C14 S1 1
3GG C15 S1 1
3GG C16 S1 1
3GG N17 S1 1
3GG N18 S1 1
3GG N19 S1 1
3GG N20 S1 1
3GG C3 F1 1
3GG C2 F1 1
3GG C1 F1 1
3GG C6 F1 1
3GG C5 F1 1
3GG C4 F1 1
3GG C10 F1 2
3GG C15 F1 2
3GG C14 F1 2
3GG C13 F1 2
3GG C12 F1 2
3GG C11 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 3GG
_pdbe_chem_comp_rdkit_properties.exactmw 280.107
_pdbe_chem_comp_rdkit_properties.amw 280.291
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 136.979
_pdbe_chem_comp_rdkit_properties.tpsa 95.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.369
_pdbe_chem_comp_rdkit_properties.CrippenMR 75.727
_pdbe_chem_comp_rdkit_properties.chi0v 10.092
_pdbe_chem_comp_rdkit_properties.chi1v 5.396
_pdbe_chem_comp_rdkit_properties.chi2v 2.056
_pdbe_chem_comp_rdkit_properties.chi3v 2.056
_pdbe_chem_comp_rdkit_properties.chi4v 1.234
_pdbe_chem_comp_rdkit_properties.chi0n 22.092
_pdbe_chem_comp_rdkit_properties.chi1n 11.237
_pdbe_chem_comp_rdkit_properties.chi2n 2.056
_pdbe_chem_comp_rdkit_properties.chi3n 2.056
_pdbe_chem_comp_rdkit_properties.chi4n 1.234
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.220
_pdbe_chem_comp_rdkit_properties.kappa1 4.957
_pdbe_chem_comp_rdkit_properties.kappa2 5.826
_pdbe_chem_comp_rdkit_properties.kappa3 3.212
_pdbe_chem_comp_rdkit_properties.Phi 1.375
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3GG UniChem ChEMBL CHEMBL3359139
3GG UniChem PDBe 3GG
3GG UniChem SureChEMBL SCHEMBL20867664
3GG UniChem PubChem 23540920
3GG UniChem Nikkaji J3.355.636E
3GG UniChem 'EPA CompTox Dashboard' DTXSID60634820
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3GG O21 1.069 0.497 -0.638 ETKDGv3 1
3GG C8 1.255 -0.118 0.447 ETKDGv3 2
3GG N7 2.569 -0.196 1.020 ETKDGv3 3
3GG C3 3.771 0.184 0.328 ETKDGv3 4
3GG C4 3.919 -0.025 -1.138 ETKDGv3 5
3GG C5 5.055 0.319 -1.758 ETKDGv3 6
3GG C6 6.173 0.899 -0.988 ETKDGv3 7
3GG C1 6.057 1.068 0.334 ETKDGv3 8
3GG C2 4.807 0.684 1.024 ETKDGv3 9
3GG N9 0.154 -0.745 1.122 ETKDGv3 10
3GG C10 -1.226 -0.538 0.774 ETKDGv3 11
3GG C11 -2.111 -1.532 0.950 ETKDGv3 12
3GG C12 -3.537 -1.339 0.613 ETKDGv3 13
3GG C13 -3.974 -0.156 0.144 ETKDGv3 14
3GG C14 -3.002 0.955 -0.017 ETKDGv3 15
3GG C15 -1.709 0.778 0.284 ETKDGv3 16
3GG C16 -5.397 0.056 -0.202 ETKDGv3 17
3GG N17 -6.434 -0.909 -0.098 ETKDGv3 18
3GG N18 -7.566 -0.225 -0.539 ETKDGv3 19
3GG N19 -7.244 0.963 -0.853 ETKDGv3 20
3GG N20 -5.871 1.172 -0.650 ETKDGv3 21
3GG H1 2.641 -0.473 2.025 ETKDGv3 22
3GG H2 3.125 -0.484 -1.712 ETKDGv3 23
3GG H3 5.162 0.160 -2.823 ETKDGv3 24
3GG H4 7.088 1.179 -1.494 ETKDGv3 25
3GG H5 6.878 1.486 0.902 ETKDGv3 26
3GG H6 4.733 0.826 2.095 ETKDGv3 27
3GG H7 0.380 -1.454 1.857 ETKDGv3 28
3GG H8 -1.787 -2.494 1.327 ETKDGv3 29
3GG H9 -4.210 -2.174 0.753 ETKDGv3 30
3GG H10 -3.334 1.925 -0.366 ETKDGv3 31
3GG H11 -1.029 1.614 0.194 ETKDGv3 32
3GG H12 -6.405 -1.902 0.221 ETKDGv3 33
#