data_3PL
#
_chem_comp.id 3PL
_chem_comp.name 3-PHENYLPROPANAL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H10 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-01-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 134.175
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3PL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3PL C C C 0 1 N N N N N N 33.609 38.363 -7.297 0.353 0.042 -3.245 C 3PL 1
3PL O O O 0 1 N N N N N N 34.286 38.077 -8.277 -0.516 0.310 -4.038 O 3PL 2
3PL CA CA C 0 1 N N N N N N 32.409 37.471 -6.899 0.208 0.451 -1.802 CA 3PL 3
3PL CB CB C 0 1 N N N N N N 31.697 36.598 -7.985 0.235 -0.793 -0.913 CB 3PL 4
3PL CG CG C 0 1 Y N N N N N 31.246 37.346 -9.222 0.091 -0.385 0.529 CG 3PL 5
3PL CD1 CD1 C 0 1 Y N N N N N 29.986 37.907 -9.299 1.214 -0.110 1.286 CD1 3PL 6
3PL CE1 CE1 C 0 1 Y N N N N N 29.583 38.607 -10.450 1.081 0.268 2.608 CE1 3PL 7
3PL CZ CZ C 0 1 Y N N N N N 30.433 38.747 -11.498 -0.174 0.364 3.177 CZ 3PL 8
3PL CE2 CE2 C 0 1 Y N N N N N 31.674 38.196 -11.441 -1.298 0.085 2.422 CE2 3PL 9
3PL CD2 CD2 C 0 1 Y N N N N N 32.094 37.494 -10.297 -1.165 -0.290 1.098 CD2 3PL 10
3PL H H H 0 1 N N N N N N 34.017 39.282 -6.843 1.233 -0.493 -3.568 H 3PL 11
3PL HA1 1HA H 0 1 N N N N N N 31.643 38.109 -6.400 1.031 1.112 -1.527 HA1 3PL 12
3PL HA2 2HA H 0 1 N N N N N N 32.724 36.807 -6.061 -0.738 0.974 -1.665 HA2 3PL 13
3PL HB1 1HB H 0 1 N N N N N N 30.837 36.051 -7.533 -0.586 -1.454 -1.188 HB1 3PL 14
3PL HB2 2HB H 0 1 N N N N N N 32.347 35.739 -8.272 1.182 -1.316 -1.050 HB2 3PL 15
3PL HD1 HD1 H 0 1 N N N N N N 29.302 37.796 -8.441 2.196 -0.185 0.841 HD1 3PL 16
3PL HE1 HE1 H 0 1 N N N N N N 28.579 39.056 -10.532 1.959 0.487 3.198 HE1 3PL 17
3PL HZ HZ H 0 1 N N N N N N 30.116 39.307 -12.394 -0.278 0.658 4.211 HZ 3PL 18
3PL HE2 HE2 H 0 1 N N N N N N 32.335 38.318 -12.316 -2.279 0.160 2.866 HE2 3PL 19
3PL HD2 HD2 H 0 1 N N N N N N 33.104 37.053 -10.242 -2.043 -0.508 0.508 HD2 3PL 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3PL C O DOUB N N 1
3PL C CA SING N N 2
3PL C H SING N N 3
3PL CA CB SING N N 4
3PL CA HA1 SING N N 5
3PL CA HA2 SING N N 6
3PL CB CG SING N N 7
3PL CB HB1 SING N N 8
3PL CB HB2 SING N N 9
3PL CG CD1 DOUB Y N 10
3PL CG CD2 SING Y N 11
3PL CD1 CE1 SING Y N 12
3PL CD1 HD1 SING N N 13
3PL CE1 CZ DOUB Y N 14
3PL CE1 HE1 SING N N 15
3PL CZ CE2 SING Y N 16
3PL CZ HZ SING N N 17
3PL CE2 CD2 DOUB Y N 18
3PL CE2 HE2 SING N N 19
3PL CD2 HD2 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3PL SMILES ACDLabs 10.04 O=CCCc1ccccc1
3PL SMILES_CANONICAL CACTVS 3.341 O=CCCc1ccccc1
3PL SMILES CACTVS 3.341 O=CCCc1ccccc1
3PL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CCC=O
3PL SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CCC=O
3PL InChI InChI 1.03 InChI=1S/C9H10O/c10-8-4-7-9-5-2-1-3-6-9/h1-3,5-6,8H,4,7H2
3PL InChIKey InChI 1.03 YGCZTXZTJXYWCO-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3PL "SYSTEMATIC NAME" ACDLabs 10.04 3-phenylpropanal
3PL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-phenylpropanal
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3PL 'Create component' 2005-01-14 RCSB
3PL 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3PL C C 5.598 3.000 1
3PL O O 6.897 3.750 2
3PL CA C 5.598 1.500 3
3PL CB C 4.299 0.750 4
3PL CG C 4.299 -0.750 5
3PL CD1 C 3.000 -1.500 6
3PL CE1 C 3.000 -3.000 7
3PL CZ C 4.299 -3.750 8
3PL CE2 C 5.598 -3.000 9
3PL CD2 C 5.598 -1.500 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3PL C O DOUBLE NONE 1
3PL C CA SINGLE NONE 2
3PL CA CB SINGLE NONE 3
3PL CB CG SINGLE NONE 4
3PL CG CD1 DOUBLE NONE 5
3PL CG CD2 SINGLE NONE 6
3PL CD1 CE1 SINGLE NONE 7
3PL CE1 CZ DOUBLE NONE 8
3PL CZ CE2 SINGLE NONE 9
3PL CE2 CD2 DOUBLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3PL MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3PL phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3PL CG S1 1
3PL CD1 S1 1
3PL CE1 S1 1
3PL CZ S1 1
3PL CE2 S1 1
3PL CD2 S1 1
3PL CG F1 1
3PL CD1 F1 1
3PL CE1 F1 1
3PL CZ F1 1
3PL CE2 F1 1
3PL CD2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3PL
_pdbe_chem_comp_rdkit_properties.exactmw 134.073
_pdbe_chem_comp_rdkit_properties.amw 134.178
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 74.737
_pdbe_chem_comp_rdkit_properties.tpsa 17.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.763
_pdbe_chem_comp_rdkit_properties.CrippenMR 40.561
_pdbe_chem_comp_rdkit_properties.chi0v 4.908
_pdbe_chem_comp_rdkit_properties.chi1v 2.454
_pdbe_chem_comp_rdkit_properties.chi2v 0.739
_pdbe_chem_comp_rdkit_properties.chi3v 0.739
_pdbe_chem_comp_rdkit_properties.chi4v 0.401
_pdbe_chem_comp_rdkit_properties.chi0n 14.908
_pdbe_chem_comp_rdkit_properties.chi1n 7.454
_pdbe_chem_comp_rdkit_properties.chi2n 0.739
_pdbe_chem_comp_rdkit_properties.chi3n 0.739
_pdbe_chem_comp_rdkit_properties.chi4n 0.401
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.110
_pdbe_chem_comp_rdkit_properties.kappa1 1.551
_pdbe_chem_comp_rdkit_properties.kappa2 3.829
_pdbe_chem_comp_rdkit_properties.kappa3 2.016
_pdbe_chem_comp_rdkit_properties.Phi 0.594
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3PL UniChem ChEMBL CHEMBL440161
3PL UniChem PDBe 3PL
3PL UniChem ChEBI 39940
3PL UniChem ZINC ZINC000001699889
3PL UniChem eMolecules 504083
3PL UniChem fdasrs LP1E86N30T
3PL UniChem HMDB HMDB0033716
3PL UniChem 'PubChem TPHARMA' 15066220
3PL UniChem NMRShiftDB 10024900
3PL UniChem 'EPA CompTox Dashboard' DTXSID0047610
3PL UniChem MetaboLights MTBLC39940
3PL UniChem BRENDA 13182
3PL UniChem BRENDA 134371
3PL UniChem BRENDA 5721
3PL UniChem BRENDA 6621
3PL UniChem BRENDA 9675
3PL UniChem Rhea 39940
3PL UniChem ChemicalBook CB3143311
3PL UniChem Nikkaji J36.950K
3PL UniChem SureChEMBL SCHEMBL1335
3PL UniChem PubChem 7707
3PL UniChem ACTor 104-53-0
3PL UniChem ACTor 1335-10-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3PL C 3.333 0.504 0.899 ETKDGv3 1
3PL O 3.490 1.422 1.689 ETKDGv3 2
3PL CA 1.975 -0.098 0.694 ETKDGv3 3
3PL CB 1.015 0.916 0.064 ETKDGv3 4
3PL CG -0.340 0.298 -0.151 ETKDGv3 5
3PL CD1 -0.627 -0.348 -1.297 ETKDGv3 6
3PL CE1 -1.949 -0.982 -1.482 ETKDGv3 7
3PL CZ -2.862 -0.928 -0.504 ETKDGv3 8
3PL CE2 -2.548 -0.237 0.763 ETKDGv3 9
3PL CD2 -1.353 0.342 0.933 ETKDGv3 10
3PL H 4.186 0.115 0.354 ETKDGv3 11
3PL HA1 1.578 -0.442 1.674 ETKDGv3 12
3PL HA2 2.073 -0.981 0.026 ETKDGv3 13
3PL HB1 1.430 1.276 -0.904 ETKDGv3 14
3PL HB2 0.914 1.801 0.731 ETKDGv3 15
3PL HD1 0.104 -0.414 -2.093 ETKDGv3 16
3PL HE1 -2.176 -1.491 -2.410 ETKDGv3 17
3PL HZ -3.830 -1.393 -0.638 ETKDGv3 18
3PL HE2 -3.286 -0.203 1.554 ETKDGv3 19
3PL HD2 -1.127 0.842 1.867 ETKDGv3 20
#