data_3PT
#
_chem_comp.id 3PT
_chem_comp.name
"(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H33 O19 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-07-10
_chem_comp.pdbx_modified_date 2012-08-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 634.354
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3PT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4FYG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3PT O0H O0H O 0 1 N N N N N N 8.487 34.356 6.383 -5.669 0.791 -1.794 O0H 3PT 1
3PT C0G C0G C 0 1 N N N N N N 8.048 34.935 5.385 -5.234 1.518 -0.933 C0G 3PT 2
3PT C0I C0I C 0 1 N N N N N N 8.991 35.235 4.229 -5.260 3.013 -1.124 C0I 3PT 3
3PT C0J C0J C 0 1 N N N N N N 10.430 34.908 4.628 -5.884 3.342 -2.481 C0J 3PT 4
3PT C0K C0K C 0 1 N N N N N N 11.154 34.224 3.497 -5.910 4.860 -2.675 C0K 3PT 5
3PT O0D O0D O 0 1 N N N N N N 6.600 35.239 5.339 -4.732 0.994 0.197 O0D 3PT 6
3PT C0C C0C C 0 1 N N R N N N 6.002 36.551 5.170 -4.744 -0.453 0.315 C0C 3PT 7
3PT C0E C0E C 0 1 N N N N N N 6.084 37.066 3.723 -6.055 -0.900 0.965 C0E 3PT 8
3PT O0F O0F O 0 1 N N N N N N 6.356 36.007 2.781 -7.166 -0.576 0.088 O0F 3PT 9
3PT C0L C0L C 0 1 N N N N N N 5.585 34.755 2.677 -8.395 -0.906 0.515 C0L 3PT 10
3PT C0N C0N C 0 1 N N N N N N 6.258 33.371 2.737 -9.597 -0.601 -0.342 C0N 3PT 11
3PT C0P C0P C 0 1 N N N N N N 5.452 32.262 3.450 -10.865 -1.075 0.371 C0P 3PT 12
3PT C0Q C0Q C 0 1 N N N N N N 6.280 31.256 4.250 -12.085 -0.765 -0.499 C0Q 3PT 13
3PT O0M O0M O 0 1 N N N N N N 4.375 34.856 2.529 -8.538 -1.446 1.586 O0M 3PT 14
3PT C0B C0B C 0 1 N N N N N N 6.484 37.525 6.240 -3.566 -0.904 1.180 C0B 3PT 15
3PT OP1 OP1 O 0 1 N N N N N N 5.977 37.045 7.487 -2.340 -0.590 0.516 OP1 3PT 16
3PT P1 P1 P 0 1 N N N N N N 5.343 37.897 8.728 -0.894 -0.924 1.140 P1 3PT 17
3PT OP3 OP3 O 0 1 N N N N N N 5.728 37.273 10.067 -0.676 -0.061 2.481 OP3 3PT 18
3PT OP2 OP2 O 0 1 N N N N N N 5.558 39.378 8.527 -0.818 -2.367 1.464 OP2 3PT 19
3PT O1 O1 O 0 1 N N N N N N 3.795 37.458 8.552 0.251 -0.553 0.071 O1 3PT 20
3PT C1 C1 C 0 1 N N S N N N 2.686 38.325 8.350 1.636 -0.831 0.286 C1 3PT 21
3PT C2 C2 C 0 1 N N S N N N 1.881 38.427 9.642 2.429 0.477 0.259 C2 3PT 22
3PT O2 O2 O 0 1 N N N N N N 1.596 37.092 10.090 2.261 1.110 -1.011 O2 3PT 23
3PT C3 C3 C 0 1 N N S N N N 0.557 39.181 9.446 3.912 0.180 0.489 C3 3PT 24
3PT O3 O3 O 0 1 N N N N N N -0.244 39.085 10.640 4.652 1.402 0.465 O3 3PT 25
3PT P3 P3 P 0 1 N N N N N N -0.087 40.007 11.960 5.521 1.926 1.714 P3 3PT 26
3PT O12 O12 O 0 1 N N N N N N 1.350 39.959 12.463 4.542 2.257 2.948 O12 3PT 27
3PT O10 O10 O 0 1 N N N N N N -0.527 41.298 11.379 6.486 0.879 2.118 O10 3PT 28
3PT O11 O11 O 0 1 N N N N N N -1.089 39.402 12.896 6.320 3.258 1.291 O11 3PT 29
3PT C4 C4 C 0 1 N N S N N N -0.261 38.509 8.342 4.423 -0.749 -0.614 C4 3PT 30
3PT O4 O4 O 0 1 N N N N N N -1.477 39.204 8.079 5.808 -1.026 -0.399 O4 3PT 31
3PT P4 P4 P 0 1 N N N N N N -2.881 38.412 8.065 6.953 -0.655 -1.469 P4 3PT 32
3PT OP4 OP4 O 0 1 N N N N N N -2.538 37.001 7.660 7.044 0.945 -1.624 OP4 3PT 33
3PT OP6 OP6 O 0 1 N N N N N N -3.398 38.531 9.475 8.369 -1.227 -0.959 OP6 3PT 34
3PT OP5 OP5 O 0 1 N N N N N N -3.682 39.143 7.026 6.620 -1.260 -2.778 OP5 3PT 35
3PT C5 C5 C 0 1 N N R N N N 0.476 38.181 7.039 3.630 -2.057 -0.588 C5 3PT 36
3PT O5 O5 O 0 1 N N N N N N -0.264 37.101 6.491 4.108 -2.924 -1.618 O5 3PT 37
3PT C6 C6 C 0 1 N N R N N N 1.879 37.628 7.256 2.147 -1.760 -0.818 C6 3PT 38
3PT O6 O6 O 0 1 N N N N N N 2.619 37.621 6.035 1.407 -2.982 -0.793 O6 3PT 39
3PT H1 H1 H 0 1 N N N N N N 8.919 36.301 3.968 -5.852 3.470 -0.331 H1 3PT 40
3PT H2 H2 H 0 1 N N N N N N 8.707 34.624 3.359 -4.242 3.401 -1.087 H2 3PT 41
3PT H3 H3 H 0 1 N N N N N N 10.420 34.243 5.504 -5.291 2.885 -3.274 H3 3PT 42
3PT H4 H4 H 0 1 N N N N N N 10.955 35.841 4.881 -6.901 2.954 -2.518 H4 3PT 43
3PT H5 H5 H 0 1 N N N N N N 12.186 33.998 3.805 -6.354 5.095 -3.643 H5 3PT 44
3PT H6 H6 H 0 1 N N N N N N 10.634 33.289 3.242 -6.502 5.317 -1.883 H6 3PT 45
3PT H7 H7 H 0 1 N N N N N N 11.170 34.886 2.619 -4.892 5.248 -2.639 H7 3PT 46
3PT H8 H8 H 0 1 N N N N N N 4.927 36.420 5.365 -4.660 -0.899 -0.676 H8 3PT 47
3PT H9 H9 H 0 1 N N N N N N 6.889 37.813 3.658 -6.028 -1.976 1.135 H9 3PT 48
3PT H10 H10 H 0 1 N N N N N N 5.125 37.536 3.460 -6.182 -0.385 1.918 H10 3PT 49
3PT H11 H11 H 0 1 N N N N N N 6.445 33.042 1.704 -9.657 0.474 -0.515 H11 3PT 50
3PT H12 H12 H 0 1 N N N N N N 7.216 33.484 3.265 -9.502 -1.118 -1.297 H12 3PT 51
3PT H13 H13 H 0 1 N N N N N N 4.747 32.747 4.142 -10.805 -2.149 0.544 H13 3PT 52
3PT H14 H14 H 0 1 N N N N N N 4.891 31.706 2.685 -10.960 -0.558 1.326 H14 3PT 53
3PT H15 H15 H 0 1 N N N N N N 5.611 30.516 4.713 -11.991 -1.282 -1.454 H15 3PT 54
3PT H16 H16 H 0 1 N N N N N N 6.984 30.744 3.578 -12.988 -1.103 0.009 H16 3PT 55
3PT H17 H17 H 0 1 N N N N N N 6.841 31.785 5.035 -12.145 0.309 -0.672 H17 3PT 56
3PT H18 H18 H 0 1 N N N N N N 7.583 37.551 6.262 -3.602 -0.389 2.140 H18 3PT 57
3PT H19 H19 H 0 1 N N N N N N 6.097 38.534 6.036 -3.625 -1.980 1.342 H19 3PT 58
3PT H20 H20 H 0 1 N N N N N N 6.078 37.944 10.641 -0.713 0.895 2.344 H20 3PT 59
3PT H21 H21 H 0 1 N N N N N N 3.001 39.324 8.015 1.764 -1.314 1.255 H21 3PT 60
3PT H22 H22 H 0 1 N N N N N N 2.482 38.958 10.395 2.064 1.138 1.045 H22 3PT 61
3PT H23 H23 H 0 1 N N N N N N 1.094 37.128 10.896 1.344 1.328 -1.224 H23 3PT 62
3PT H24 H24 H 0 1 N N N N N N 0.758 40.230 9.182 4.039 -0.303 1.458 H24 3PT 63
3PT H25 H25 H 0 1 N N N N N N 1.764 40.802 12.321 3.882 2.936 2.755 H25 3PT 64
3PT H26 H26 H 0 1 N N N N N N -1.850 39.967 12.954 6.867 3.630 1.997 H26 3PT 65
3PT H27 H27 H 0 1 N N N N N N -0.551 37.533 8.757 4.295 -0.266 -1.583 H27 3PT 66
3PT H28 H28 H 0 1 N N N N N N -2.898 36.822 6.799 7.260 1.408 -0.803 H28 3PT 67
3PT H29 H29 H 0 1 N N N N N N -4.179 39.071 9.482 9.107 -1.040 -1.555 H29 3PT 68
3PT H30 H30 H 0 1 N N N N N N 0.498 39.056 6.373 3.758 -2.540 0.381 H30 3PT 69
3PT H31 H31 H 0 1 N N N N N N -1.158 37.379 6.329 3.649 -3.774 -1.661 H31 3PT 70
3PT H32 H32 H 0 1 N N N N N N 1.756 36.583 7.577 2.020 -1.277 -1.787 H32 3PT 71
3PT H33 H33 H 0 1 N N N N N N 3.489 37.273 6.193 1.678 -3.619 -1.468 H33 3PT 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3PT O0M C0L DOUB N N 1
3PT C0L C0N SING N N 2
3PT C0L O0F SING N N 3
3PT C0N C0P SING N N 4
3PT O0F C0E SING N N 5
3PT C0P C0Q SING N N 6
3PT C0K C0J SING N N 7
3PT C0E C0C SING N N 8
3PT C0I C0J SING N N 9
3PT C0I C0G SING N N 10
3PT C0C O0D SING N N 11
3PT C0C C0B SING N N 12
3PT O0D C0G SING N N 13
3PT C0G O0H DOUB N N 14
3PT O6 C6 SING N N 15
3PT C0B OP1 SING N N 16
3PT O5 C5 SING N N 17
3PT OP5 P4 DOUB N N 18
3PT C5 C6 SING N N 19
3PT C5 C4 SING N N 20
3PT C6 C1 SING N N 21
3PT OP1 P1 SING N N 22
3PT OP4 P4 SING N N 23
3PT P4 O4 SING N N 24
3PT P4 OP6 SING N N 25
3PT O4 C4 SING N N 26
3PT C4 C3 SING N N 27
3PT C1 O1 SING N N 28
3PT C1 C2 SING N N 29
3PT OP2 P1 DOUB N N 30
3PT O1 P1 SING N N 31
3PT P1 OP3 SING N N 32
3PT C3 C2 SING N N 33
3PT C3 O3 SING N N 34
3PT C2 O2 SING N N 35
3PT O3 P3 SING N N 36
3PT O10 P3 DOUB N N 37
3PT P3 O12 SING N N 38
3PT P3 O11 SING N N 39
3PT C0I H1 SING N N 40
3PT C0I H2 SING N N 41
3PT C0J H3 SING N N 42
3PT C0J H4 SING N N 43
3PT C0K H5 SING N N 44
3PT C0K H6 SING N N 45
3PT C0K H7 SING N N 46
3PT C0C H8 SING N N 47
3PT C0E H9 SING N N 48
3PT C0E H10 SING N N 49
3PT C0N H11 SING N N 50
3PT C0N H12 SING N N 51
3PT C0P H13 SING N N 52
3PT C0P H14 SING N N 53
3PT C0Q H15 SING N N 54
3PT C0Q H16 SING N N 55
3PT C0Q H17 SING N N 56
3PT C0B H18 SING N N 57
3PT C0B H19 SING N N 58
3PT OP3 H20 SING N N 59
3PT C1 H21 SING N N 60
3PT C2 H22 SING N N 61
3PT O2 H23 SING N N 62
3PT C3 H24 SING N N 63
3PT O12 H25 SING N N 64
3PT O11 H26 SING N N 65
3PT C4 H27 SING N N 66
3PT OP4 H28 SING N N 67
3PT OP6 H29 SING N N 68
3PT C5 H30 SING N N 69
3PT O5 H31 SING N N 70
3PT C6 H32 SING N N 71
3PT O6 H33 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3PT SMILES ACDLabs 12.01 O=C(OCC(OC(=O)CCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)C1O)CCC
3PT InChI InChI 1.03 InChI=1S/C17H33O19P3/c1-3-5-10(18)31-7-9(33-11(19)6-4-2)8-32-39(29,30)36-15-12(20)13(21)16(34-37(23,24)25)17(14(15)22)35-38(26,27)28/h9,12-17,20-22H,3-8H2,1-2H3,(H,29,30)(H2,23,24,25)(H2,26,27,28)/t9-,12-,13-,14+,15+,16+,17+/m1/s1
3PT InChIKey InChI 1.03 DHAFWWKSHUBGAH-DXOPXGNRSA-N
3PT SMILES_CANONICAL CACTVS 3.370 CCCC(=O)OC[C@H](CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]1O)OC(=O)CCC
3PT SMILES CACTVS 3.370 CCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCC
3PT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCC(=O)OC[C@H](COP(=O)(O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC
3PT SMILES "OpenEye OEToolkits" 1.7.6 CCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3PT "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate"
3PT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-butanoyloxy-3-[oxidanyl-[(1S,2R,3R,4S,5S,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] butanoate"
#
_pdbx_chem_comp_audit.comp_id 3PT
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-07-10
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3PT O0H O 12.899 -5.715 1
3PT C0G C 14.198 -4.965 2
3PT C0I C 15.497 -5.715 3
3PT C0J C 15.497 -7.215 4
3PT C0K C 16.796 -7.965 5
3PT O0D O 14.198 -3.465 6
3PT C0C C 12.899 -2.715 7
3PT C0E C 11.600 -3.465 8
3PT O0F O 11.600 -4.965 9
3PT C0L C 10.301 -5.715 10
3PT C0N C 10.301 -7.215 11
3PT C0P C 9.002 -7.965 12
3PT C0Q C 9.002 -9.465 13
3PT O0M O 9.002 -4.965 14
3PT C0B C 12.899 -1.215 15
3PT OP1 O 11.600 -0.465 16
3PT P1 P 11.600 1.035 17
3PT OP3 O 10.100 1.035 18
3PT OP2 O 13.100 1.035 19
3PT O1 O 11.600 2.535 20
3PT C1 C 10.301 3.285 21
3PT C2 C 10.301 4.785 22
3PT O2 O 11.600 5.535 23
3PT C3 C 9.002 5.535 24
3PT O3 O 9.002 7.035 25
3PT P3 P 7.702 7.785 26
3PT O12 O 8.453 9.084 27
3PT O10 O 6.404 8.535 28
3PT O11 O 6.952 6.486 29
3PT C4 C 7.702 4.785 30
3PT O4 O 6.404 5.535 31
3PT P4 P 5.104 4.785 32
3PT OP4 O 4.354 6.084 33
3PT OP6 O 5.854 3.486 34
3PT OP5 O 3.805 4.035 35
3PT C5 C 7.702 3.285 36
3PT O5 O 6.404 2.535 37
3PT C6 C 9.002 2.535 38
3PT O6 O 9.002 1.035 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3PT O0M C0L DOUBLE NONE 1
3PT C0L C0N SINGLE NONE 2
3PT C0L O0F SINGLE NONE 3
3PT C0N C0P SINGLE NONE 4
3PT O0F C0E SINGLE NONE 5
3PT C0P C0Q SINGLE NONE 6
3PT C0K C0J SINGLE NONE 7
3PT C0C C0E SINGLE BEGINDASH 8
3PT C0I C0J SINGLE NONE 9
3PT C0I C0G SINGLE NONE 10
3PT C0C O0D SINGLE NONE 11
3PT C0C C0B SINGLE NONE 12
3PT O0D C0G SINGLE NONE 13
3PT C0G O0H DOUBLE NONE 14
3PT C6 O6 SINGLE BEGINDASH 15
3PT C0B OP1 SINGLE NONE 16
3PT C5 O5 SINGLE BEGINWEDGE 17
3PT OP5 P4 DOUBLE NONE 18
3PT C5 C6 SINGLE NONE 19
3PT C5 C4 SINGLE NONE 20
3PT C6 C1 SINGLE NONE 21
3PT OP1 P1 SINGLE NONE 22
3PT OP4 P4 SINGLE NONE 23
3PT P4 O4 SINGLE NONE 24
3PT P4 OP6 SINGLE NONE 25
3PT C4 O4 SINGLE BEGINDASH 26
3PT C4 C3 SINGLE NONE 27
3PT C1 O1 SINGLE BEGINWEDGE 28
3PT C1 C2 SINGLE NONE 29
3PT OP2 P1 DOUBLE NONE 30
3PT O1 P1 SINGLE NONE 31
3PT P1 OP3 SINGLE BEGINWEDGE 32
3PT C3 C2 SINGLE NONE 33
3PT C3 O3 SINGLE BEGINWEDGE 34
3PT C2 O2 SINGLE BEGINWEDGE 35
3PT O3 P3 SINGLE NONE 36
3PT O10 P3 DOUBLE NONE 37
3PT P3 O12 SINGLE NONE 38
3PT P3 O11 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3PT MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
3PT cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
3PT phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3PT C1 S1 1
3PT C2 S1 1
3PT C3 S1 1
3PT C4 S1 1
3PT C5 S1 1
3PT C6 S1 1
3PT C1 F1 1
3PT C6 F1 1
3PT C5 F1 1
3PT C4 F1 1
3PT C3 F1 1
3PT C2 F1 1
3PT OP1 F2 1
3PT P1 F2 1
3PT OP2 F2 1
3PT O1 F2 1
3PT OP3 F2 1
3PT O3 F2 2
3PT P3 F2 2
3PT O10 F2 2
3PT O12 F2 2
3PT O11 F2 2
3PT O4 F2 3
3PT P4 F2 3
3PT OP5 F2 3
3PT OP4 F2 3
3PT OP6 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 3PT
_pdbe_chem_comp_rdkit_properties.exactmw 634.083
_pdbe_chem_comp_rdkit_properties.amw 634.354
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 19
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 26
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.882
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 268.637
_pdbe_chem_comp_rdkit_properties.tpsa 302.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.404
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.160
_pdbe_chem_comp_rdkit_properties.chi0v 20.282
_pdbe_chem_comp_rdkit_properties.chi1v 12.726
_pdbe_chem_comp_rdkit_properties.chi2v 4.391
_pdbe_chem_comp_rdkit_properties.chi3v 4.391
_pdbe_chem_comp_rdkit_properties.chi4v 3.120
_pdbe_chem_comp_rdkit_properties.chi0n 50.598
_pdbe_chem_comp_rdkit_properties.chi1n 24.110
_pdbe_chem_comp_rdkit_properties.chi2n 2.857
_pdbe_chem_comp_rdkit_properties.chi3n 2.857
_pdbe_chem_comp_rdkit_properties.chi4n 1.720
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.850
_pdbe_chem_comp_rdkit_properties.kappa1 10.401
_pdbe_chem_comp_rdkit_properties.kappa2 15.398
_pdbe_chem_comp_rdkit_properties.kappa3 13.119
_pdbe_chem_comp_rdkit_properties.Phi 4.107
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3PT UniChem PDBe 3PT
3PT UniChem ZINC ZINC000098208463
3PT UniChem PubChem 60138181
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3PT O0H -3.915 -4.301 2.398 ETKDGv3 1
3PT C0G -4.431 -3.555 1.522 ETKDGv3 2
3PT C0I -5.412 -4.123 0.547 ETKDGv3 3
3PT C0J -6.842 -3.944 1.063 ETKDGv3 4
3PT C0K -7.858 -4.511 0.077 ETKDGv3 5
3PT O0D -4.139 -2.187 1.483 ETKDGv3 6
3PT C0C -3.197 -1.553 2.350 ETKDGv3 7
3PT C0E -3.469 -0.040 2.352 ETKDGv3 8
3PT O0F -3.328 0.510 1.042 ETKDGv3 9
3PT C0L -2.172 1.162 0.594 ETKDGv3 10
3PT C0N -2.038 1.506 -0.857 ETKDGv3 11
3PT C0P -2.589 2.904 -1.164 ETKDGv3 12
3PT C0Q -1.703 4.016 -0.603 ETKDGv3 13
3PT O0M -1.256 1.481 1.400 ETKDGv3 14
3PT C0B -1.765 -1.886 1.902 ETKDGv3 15
3PT OP1 -0.840 -1.263 2.763 ETKDGv3 16
3PT P1 0.712 -1.372 2.063 ETKDGv3 17
3PT OP3 1.832 -0.670 3.119 ETKDGv3 18
3PT OP2 1.078 -2.824 1.846 ETKDGv3 19
3PT O1 0.709 -0.546 0.566 ETKDGv3 20
3PT C1 2.027 -0.412 0.068 ETKDGv3 21
3PT C2 2.506 1.038 0.292 ETKDGv3 22
3PT O2 1.571 1.938 -0.252 ETKDGv3 23
3PT C3 3.901 1.259 -0.335 ETKDGv3 24
3PT O3 4.276 2.616 -0.177 ETKDGv3 25
3PT P3 5.416 2.781 1.085 ETKDGv3 26
3PT O12 4.795 2.157 2.533 ETKDGv3 27
3PT O10 6.696 2.062 0.719 ETKDGv3 28
3PT O11 5.751 4.426 1.297 ETKDGv3 29
3PT C4 3.885 0.925 -1.842 ETKDGv3 30
3PT O4 5.206 1.042 -2.341 ETKDGv3 31
3PT P4 5.305 2.303 -3.491 ETKDGv3 32
3PT OP4 4.249 1.998 -4.778 ETKDGv3 33
3PT OP6 6.888 2.387 -4.082 ETKDGv3 34
3PT OP5 4.946 3.624 -2.848 ETKDGv3 35
3PT C5 3.403 -0.525 -2.065 ETKDGv3 36
3PT O5 3.327 -0.793 -3.442 ETKDGv3 37
3PT C6 2.015 -0.752 -1.438 ETKDGv3 38
3PT O6 1.652 -2.097 -1.615 ETKDGv3 39
3PT H1 -5.294 -3.600 -0.427 ETKDGv3 40
3PT H2 -5.197 -5.203 0.390 ETKDGv3 41
3PT H3 -6.956 -4.467 2.038 ETKDGv3 42
3PT H4 -7.053 -2.863 1.216 ETKDGv3 43
3PT H5 -8.884 -4.368 0.477 ETKDGv3 44
3PT H6 -7.684 -5.598 -0.075 ETKDGv3 45
3PT H7 -7.781 -3.987 -0.900 ETKDGv3 46
3PT H8 -3.345 -1.923 3.389 ETKDGv3 47
3PT H9 -4.517 0.123 2.684 ETKDGv3 48
3PT H10 -2.816 0.479 3.086 ETKDGv3 49
3PT H11 -2.608 0.759 -1.451 ETKDGv3 50
3PT H12 -0.974 1.433 -1.170 ETKDGv3 51
3PT H13 -3.619 3.006 -0.759 ETKDGv3 52
3PT H14 -2.646 3.026 -2.268 ETKDGv3 53
3PT H15 -0.666 3.917 -0.987 ETKDGv3 54
3PT H16 -1.690 3.983 0.507 ETKDGv3 55
3PT H17 -2.104 5.002 -0.917 ETKDGv3 56
3PT H18 -1.646 -1.561 0.843 ETKDGv3 57
3PT H19 -1.624 -2.988 1.946 ETKDGv3 58
3PT H20 1.425 0.195 3.377 ETKDGv3 59
3PT H21 2.759 -1.105 0.550 ETKDGv3 60
3PT H22 2.583 1.202 1.390 ETKDGv3 61
3PT H23 1.675 2.796 0.236 ETKDGv3 62
3PT H24 4.614 0.542 0.141 ETKDGv3 63
3PT H25 4.977 1.184 2.498 ETKDGv3 64
3PT H26 6.357 4.461 2.079 ETKDGv3 65
3PT H27 3.147 1.601 -2.340 ETKDGv3 66
3PT H28 4.606 1.181 -5.207 ETKDGv3 67
3PT H29 7.455 2.475 -3.274 ETKDGv3 68
3PT H30 4.124 -1.230 -1.583 ETKDGv3 69
3PT H31 4.246 -1.017 -3.745 ETKDGv3 70
3PT H32 1.280 -0.094 -1.962 ETKDGv3 71
3PT H33 0.663 -2.144 -1.534 ETKDGv3 72
#