data_3RZ
#
_chem_comp.id 3RZ
_chem_comp.name 4-amino-2-methyl-N-(1H-pyrazol-3-yl)quinazoline-8-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H12 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-12-07
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 268.274
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3RZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3PRZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3RZ C1 C1 C 0 1 N N N N N N 45.084 11.654 28.140 2.412 3.425 0.001 C1 3RZ 1
3RZ N2 N2 N 0 1 Y N N N N N 47.080 12.871 28.643 3.678 1.346 0.000 N2 3RZ 2
3RZ C3 C3 C 0 1 Y N N N N N 47.688 13.851 29.317 3.810 0.026 -0.000 C3 3RZ 3
3RZ N4 N4 N 0 1 N N N N N N 49.051 14.062 29.095 5.057 -0.560 0.000 N4 3RZ 4
3RZ C5 C5 C 0 1 Y N N N N N 47.000 14.650 30.210 2.635 -0.764 -0.001 C5 3RZ 5
3RZ C6 C6 C 0 1 Y N N N N N 45.641 14.423 30.390 1.385 -0.100 -0.000 C6 3RZ 6
3RZ C7 C7 C 0 1 Y N N N N N 44.973 15.246 31.289 0.196 -0.867 -0.000 C7 3RZ 7
3RZ N8 N8 N 0 1 Y N N N N N 45.021 13.449 29.712 1.365 1.237 0.000 N8 3RZ 8
3RZ C9 C9 C 0 1 Y N N N N N 45.774 12.728 28.880 2.487 1.920 0.000 C9 3RZ 9
3RZ C10 C10 C 0 1 Y N N N N N 46.975 16.467 31.772 1.521 -2.884 -0.000 C10 3RZ 10
3RZ C11 C11 C 0 1 Y N N N N N 45.630 16.252 31.972 0.285 -2.254 -0.000 C11 3RZ 11
3RZ C12 C12 C 0 1 Y N N N N N 47.655 15.657 30.891 2.681 -2.163 -0.000 C12 3RZ 12
3RZ C13 C13 C 0 1 N N N N N N 43.535 15.091 31.597 -1.120 -0.204 0.000 C13 3RZ 13
3RZ O14 O14 O 0 1 N N N N N N 43.029 15.836 32.427 -1.188 1.011 0.001 O14 3RZ 14
3RZ N15 N15 N 0 1 N N N N N N 42.881 14.077 30.920 -2.247 -0.942 0.000 N15 3RZ 15
3RZ C16 C16 C 0 1 Y N N N N N 41.597 13.671 31.261 -3.497 -0.312 0.001 C16 3RZ 16
3RZ C17 C17 C 0 1 Y N N N N N 40.820 12.781 30.479 -3.723 1.074 -0.005 C17 3RZ 17
3RZ C18 C18 C 0 1 Y N N N N N 39.642 12.631 31.164 -5.060 1.278 -0.002 C18 3RZ 18
3RZ N19 N19 N 0 1 Y N N N N N 39.755 13.413 32.274 -5.662 0.070 0.004 N19 3RZ 19
3RZ N20 N20 N 0 1 Y N N N N N 40.933 14.046 32.364 -4.664 -0.913 0.000 N20 3RZ 20
3RZ H1 H1 H 0 1 N N N N N N 45.804 11.134 27.491 2.395 3.789 -1.026 H1 3RZ 21
3RZ H1A H1A H 0 1 N N N N N N 44.650 10.938 28.853 1.506 3.744 0.515 H1A 3RZ 22
3RZ H1B H1B H 0 1 N N N N N N 44.283 12.089 27.524 3.283 3.832 0.516 H1B 3RZ 23
3RZ HN4 HN4 H 0 1 N N N N N N 49.385 13.403 28.421 5.853 -0.007 0.001 HN4 3RZ 24
3RZ HN4A HN4A H 0 0 N N N N N N 49.193 14.991 28.752 5.139 -1.527 -0.000 HN4A 3RZ 25
3RZ H10 H10 H 0 1 N N N N N N 47.488 17.258 32.298 1.567 -3.963 -0.000 H10 3RZ 26
3RZ H11 H11 H 0 1 N N N N N N 45.085 16.873 32.667 -0.617 -2.848 0.000 H11 3RZ 27
3RZ H12 H12 H 0 1 N N N N N N 48.712 15.811 30.731 3.633 -2.672 -0.001 H12 3RZ 28
3RZ HN15 HN15 H 0 0 N N N N N N 43.347 13.622 30.161 -2.192 -1.911 -0.000 HN15 3RZ 29
3RZ H17 H17 H 0 1 N N N N N N 41.097 12.319 29.543 -2.963 1.842 -0.009 H17 3RZ 30
3RZ H18 H18 H 0 1 N N N N N N 38.798 12.019 30.882 -5.557 2.236 -0.005 H18 3RZ 31
3RZ HN19 HN19 H 0 0 N N N N N N 39.029 13.506 32.956 -6.619 -0.090 0.007 HN19 3RZ 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3RZ C1 C9 SING N N 1
3RZ C1 H1 SING N N 2
3RZ C1 H1A SING N N 3
3RZ C1 H1B SING N N 4
3RZ N2 C9 DOUB Y N 5
3RZ N2 C3 SING Y N 6
3RZ N4 C3 SING N N 7
3RZ C3 C5 DOUB Y N 8
3RZ N4 HN4 SING N N 9
3RZ N4 HN4A SING N N 10
3RZ C5 C6 SING Y N 11
3RZ C5 C12 SING Y N 12
3RZ N8 C6 DOUB Y N 13
3RZ C6 C7 SING Y N 14
3RZ C7 C13 SING N N 15
3RZ C7 C11 DOUB Y N 16
3RZ C9 N8 SING Y N 17
3RZ C12 C10 DOUB Y N 18
3RZ C10 C11 SING Y N 19
3RZ C10 H10 SING N N 20
3RZ C11 H11 SING N N 21
3RZ C12 H12 SING N N 22
3RZ N15 C13 SING N N 23
3RZ C13 O14 DOUB N N 24
3RZ N15 C16 SING N N 25
3RZ N15 HN15 SING N N 26
3RZ C17 C16 SING Y N 27
3RZ C16 N20 DOUB Y N 28
3RZ C17 C18 DOUB Y N 29
3RZ C17 H17 SING N N 30
3RZ C18 N19 SING Y N 31
3RZ C18 H18 SING N N 32
3RZ N19 N20 SING Y N 33
3RZ N19 HN19 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3RZ SMILES ACDLabs 12.01 O=C(c2c1nc(nc(N)c1ccc2)C)Nc3nncc3
3RZ SMILES_CANONICAL CACTVS 3.370 Cc1nc(N)c2cccc(C(=O)Nc3cc[nH]n3)c2n1
3RZ SMILES CACTVS 3.370 Cc1nc(N)c2cccc(C(=O)Nc3cc[nH]n3)c2n1
3RZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1nc2c(cccc2C(=O)Nc3cc[nH]n3)c(n1)N
3RZ SMILES "OpenEye OEToolkits" 1.7.0 Cc1nc2c(cccc2C(=O)Nc3cc[nH]n3)c(n1)N
3RZ InChI InChI 1.03 InChI=1S/C13H12N6O/c1-7-16-11-8(12(14)17-7)3-2-4-9(11)13(20)18-10-5-6-15-19-10/h2-6H,1H3,(H2,14,16,17)(H2,15,18,19,20)
3RZ InChIKey InChI 1.03 DMLHUAFVSLGSDJ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3RZ "SYSTEMATIC NAME" ACDLabs 12.01 4-amino-2-methyl-N-(1H-pyrazol-3-yl)quinazoline-8-carboxamide
3RZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 4-azanyl-2-methyl-N-(1H-pyrazol-3-yl)quinazoline-8-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3RZ 'Create component' 2010-12-07 RCSB
3RZ 'Modify aromatic_flag' 2011-06-04 RCSB
3RZ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3RZ C1 C 10.697 0.584 1
3RZ N2 N 9.398 2.834 2
3RZ C3 C 8.099 3.584 3
3RZ N4 N 8.099 5.084 4
3RZ C5 C 6.800 2.834 5
3RZ C6 C 6.800 1.334 6
3RZ C7 C 5.459 0.532 7
3RZ N8 N 8.099 0.584 8
3RZ C9 C 9.398 1.334 9
3RZ C10 C 4.100 2.865 10
3RZ C11 C 4.100 1.303 11
3RZ C12 C 5.459 3.636 12
3RZ C13 C 5.476 -0.968 13
3RZ O14 O 6.784 -1.702 14
3RZ N15 N 4.186 -1.733 15
3RZ C16 C 4.203 -3.232 16
3RZ C17 C 5.427 -4.100 17
3RZ C18 C 4.980 -5.532 18
3RZ N19 N 3.480 -5.549 19
3RZ N20 N 3.000 -4.128 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3RZ C1 C9 SINGLE NONE 1
3RZ N2 C9 DOUBLE NONE 2
3RZ N2 C3 SINGLE NONE 3
3RZ N4 C3 SINGLE NONE 4
3RZ C3 C5 DOUBLE NONE 5
3RZ C5 C6 SINGLE NONE 6
3RZ C5 C12 SINGLE NONE 7
3RZ N8 C6 DOUBLE NONE 8
3RZ C6 C7 SINGLE NONE 9
3RZ C7 C13 SINGLE NONE 10
3RZ C7 C11 DOUBLE NONE 11
3RZ C9 N8 SINGLE NONE 12
3RZ C12 C10 DOUBLE NONE 13
3RZ C10 C11 SINGLE NONE 14
3RZ N15 C13 SINGLE NONE 15
3RZ C13 O14 DOUBLE NONE 16
3RZ N15 C16 SINGLE NONE 17
3RZ C17 C16 SINGLE NONE 18
3RZ C16 N20 DOUBLE NONE 19
3RZ C17 C18 DOUBLE NONE 20
3RZ C18 N19 SINGLE NONE 21
3RZ N19 N20 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3RZ MurckoScaffold S1 scaffold 'O=C(Nc1cc[nH]n1)c1cccc2cncnc12' InChI=1S/C12H9N5O/c18-12(16-10-4-5-15-17-10)9-3-1-2-8-6-13-7-14-11(8)9/h1-7H,(H2,15,16,17,18) IGGUTVVGCUOVEA-UHFFFAOYSA-N
3RZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
3RZ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3RZ pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
3RZ pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
3RZ quinazoline F5 fragment c1ccc2ncncc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)5-9-6-10-8/h1-6H JWVCLYRUEFBMGU-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3RZ N2 S1 1
3RZ C3 S1 1
3RZ C5 S1 1
3RZ C6 S1 1
3RZ C7 S1 1
3RZ N8 S1 1
3RZ C9 S1 1
3RZ C10 S1 1
3RZ C11 S1 1
3RZ C12 S1 1
3RZ C13 S1 1
3RZ O14 S1 1
3RZ N15 S1 1
3RZ C16 S1 1
3RZ C17 S1 1
3RZ C18 S1 1
3RZ N19 S1 1
3RZ N20 S1 1
3RZ N15 F1 1
3RZ C13 F1 1
3RZ O14 F1 1
3RZ C7 F1 1
3RZ C5 F2 1
3RZ C6 F2 1
3RZ C7 F2 1
3RZ C11 F2 1
3RZ C10 F2 1
3RZ C12 F2 1
3RZ C16 F3 1
3RZ C17 F3 1
3RZ C18 F3 1
3RZ N19 F3 1
3RZ N20 F3 1
3RZ C5 F4 1
3RZ C3 F4 1
3RZ N2 F4 1
3RZ C9 F4 1
3RZ N8 F4 1
3RZ C6 F4 1
3RZ C10 F5 1
3RZ C11 F5 1
3RZ C7 F5 1
3RZ C6 F5 1
3RZ C5 F5 1
3RZ C12 F5 1
3RZ C3 F5 1
3RZ N2 F5 1
3RZ C9 F5 1
3RZ N8 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3RZ
_pdbe_chem_comp_rdkit_properties.exactmw 268.107
_pdbe_chem_comp_rdkit_properties.amw 268.280
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.077
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.880
_pdbe_chem_comp_rdkit_properties.tpsa 109.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.197
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.842
_pdbe_chem_comp_rdkit_properties.chi0v 9.592
_pdbe_chem_comp_rdkit_properties.chi1v 5.167
_pdbe_chem_comp_rdkit_properties.chi2v 2.285
_pdbe_chem_comp_rdkit_properties.chi3v 2.285
_pdbe_chem_comp_rdkit_properties.chi4v 1.490
_pdbe_chem_comp_rdkit_properties.chi0n 21.592
_pdbe_chem_comp_rdkit_properties.chi1n 10.955
_pdbe_chem_comp_rdkit_properties.chi2n 2.285
_pdbe_chem_comp_rdkit_properties.chi3n 2.285
_pdbe_chem_comp_rdkit_properties.chi4n 1.490
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.960
_pdbe_chem_comp_rdkit_properties.kappa1 4.550
_pdbe_chem_comp_rdkit_properties.kappa2 4.615
_pdbe_chem_comp_rdkit_properties.kappa3 2.049
_pdbe_chem_comp_rdkit_properties.Phi 1.050
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3RZ UniChem PDBe 3RZ
3RZ UniChem ZINC ZINC000064746409
3RZ UniChem PubChem 49852676
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3RZ C1 -1.603 2.871 0.869 ETKDGv3 1
3RZ N2 -3.087 0.993 0.506 ETKDGv3 2
3RZ C3 -3.381 -0.384 0.212 ETKDGv3 3
3RZ N4 -4.757 -0.780 0.148 ETKDGv3 4
3RZ C5 -2.358 -1.248 0.010 ETKDGv3 5
3RZ C6 -0.971 -0.718 0.072 ETKDGv3 6
3RZ C7 0.171 -1.642 -0.158 ETKDGv3 7
3RZ N8 -0.770 0.534 0.362 ETKDGv3 8
3RZ C9 -1.865 1.428 0.597 ETKDGv3 9
3RZ C10 -1.455 -3.485 -0.402 ETKDGv3 10
3RZ C11 -0.078 -2.948 -0.361 ETKDGv3 11
3RZ C12 -2.525 -2.701 -0.238 ETKDGv3 12
3RZ C13 1.572 -1.155 -0.149 ETKDGv3 13
3RZ O14 2.482 -1.899 0.310 ETKDGv3 14
3RZ N15 1.902 0.133 -0.694 ETKDGv3 15
3RZ C16 3.159 0.789 -0.481 ETKDGv3 16
3RZ C17 3.541 2.070 -1.075 ETKDGv3 17
3RZ C18 4.753 2.322 -0.606 ETKDGv3 18
3RZ N19 5.142 1.259 0.253 ETKDGv3 19
3RZ N20 4.094 0.336 0.289 ETKDGv3 20
3RZ H1 -0.585 3.001 1.293 ETKDGv3 21
3RZ H1A -1.678 3.445 -0.078 ETKDGv3 22
3RZ H1B -2.345 3.265 1.596 ETKDGv3 23
3RZ HN4 -5.073 -1.725 -0.154 ETKDGv3 24
3RZ HN4A -5.499 -0.077 0.361 ETKDGv3 25
3RZ H10 -1.595 -4.545 -0.574 ETKDGv3 26
3RZ H11 0.738 -3.641 -0.525 ETKDGv3 27
3RZ H12 -3.498 -3.166 -0.273 ETKDGv3 28
3RZ HN15 1.205 0.615 -1.305 ETKDGv3 29
3RZ H17 2.968 2.690 -1.751 ETKDGv3 30
3RZ H18 5.355 3.192 -0.831 ETKDGv3 31
3RZ HN19 6.039 1.169 0.778 ETKDGv3 32
#