data_3SD
#
_chem_comp.id 3SD
_chem_comp.name
N~4~-(2,2-dimethylpropyl)-N~1~-{(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}-N~2~-[(5-methyl-1,2-oxazol-3-yl)carbonyl]-L-aspartamide
_chem_comp.type PEPTIDE-LIKE
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H41 N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-15
_chem_comp.pdbx_modified_date 2012-06-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 575.698
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3SD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3SDI
_chem_comp.pdbx_subcomponent_list "02J 02L HPE 02N"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3SD C4 C4 C 0 1 Y N N N N N 12.336 -137.034 23.598 4.759 3.878 0.608 C4 02J 1
3SD C5 C5 C 0 1 Y N N N N N 12.609 -136.245 24.644 5.691 4.117 1.560 C5 02J 2
3SD C6 C6 C 0 1 N N N N N N 13.245 -136.712 25.953 6.517 5.368 1.717 C6 02J 3
3SD O1 O1 O 0 1 Y N N N N N 12.224 -134.952 24.375 5.736 3.026 2.336 O1 02J 4
3SD N2 N2 N 0 1 Y N N N N N 11.681 -134.987 23.052 4.956 2.179 1.967 N2 02J 5
3SD C3 C3 C 0 1 Y N N N N N 11.777 -136.257 22.655 4.283 2.573 0.915 C3 02J 6
3SD C41 C41 C 0 1 N N N N N N 11.334 -136.786 21.292 3.243 1.809 0.184 C41 02J 7
3SD O42 O42 O 0 1 N N N N N N 11.775 -137.860 20.898 2.702 2.296 -0.788 O42 02J 8
3SD C8 C8 C 0 1 N N S N N N 10.020 -136.407 19.265 1.948 -0.222 -0.182 C8 02L 9
3SD C10 C10 C 0 1 N N N N N N 11.053 -136.240 18.166 0.544 0.082 0.273 C10 02L 10
3SD N7 N7 N 0 1 N N N N N N 10.519 -136.010 20.587 2.897 0.574 0.600 N7 02L 11
3SD C9 C9 C 0 1 N N N N N N 8.884 -135.504 18.830 2.240 -1.710 0.025 C9 02L 12
3SD C33 C33 C 0 1 N N N N N N 7.601 -135.702 19.601 3.591 -2.042 -0.554 C33 02L 13
3SD O35 O35 O 0 1 N N N N N N 7.381 -136.753 20.213 4.211 -1.199 -1.168 O35 02L 14
3SD N34 N34 N 0 1 N N N N N N 6.786 -134.644 19.507 4.111 -3.274 -0.389 N34 02L 15
3SD C36 C36 C 0 1 N N N N N N 5.457 -134.543 20.141 5.424 -3.597 -0.952 C36 02L 16
3SD C37 C37 C 0 1 N N N N N N 4.361 -134.324 19.076 5.777 -5.049 -0.624 C37 02L 17
3SD C40 C40 C 0 1 N N N N N N 4.289 -135.530 18.142 5.812 -5.236 0.894 C40 02L 18
3SD C38 C38 C 0 1 N N N N N N 3.006 -134.133 19.753 4.722 -5.978 -1.228 C38 02L 19
3SD C39 C39 C 0 1 N N N N N N 4.654 -133.080 18.244 7.149 -5.386 -1.212 C39 02L 20
3SD O11 O11 O 0 1 N N N N N N 11.724 -135.219 18.044 0.354 0.885 1.162 O11 02L 21
3SD N13 N13 N 0 1 N N N N N N 11.066 -137.237 17.298 -0.502 -0.539 -0.309 N HPE 22
3SD C12 C12 C 0 1 N N S N N N 11.910 -137.224 16.108 -1.867 -0.244 0.133 CA HPE 23
3SD C15 C15 C 0 1 N N N N N N 10.979 -136.941 14.931 -2.760 -1.418 -0.175 C HPE 24
3SD O19 O19 O 0 1 N N N N N N 9.829 -137.372 14.901 -2.301 -2.405 -0.711 O HPE 25
3SD C14 C14 C 0 1 N N N N N N 12.573 -138.582 15.933 -2.384 0.996 -0.601 CB HPE 26
3SD C17 C17 C 0 1 N N N N N N 13.389 -138.912 17.165 -1.553 2.214 -0.191 CG HPE 27
3SD C18 C18 C 0 1 Y N N N N N 14.574 -137.960 17.312 -2.062 3.435 -0.913 CD HPE 28
3SD C28 C28 C 0 1 Y N N N N N 15.505 -137.829 16.272 -3.055 4.210 -0.345 CE1 HPE 29
3SD C32 C32 C 0 1 Y N N N N N 14.731 -137.234 18.493 -1.534 3.779 -2.144 CE2 HPE 30
3SD C29 C29 C 0 1 Y N N N N N 16.603 -136.972 16.402 -3.521 5.330 -1.008 CZ1 HPE 31
3SD C31 C31 C 0 1 Y N N N N N 15.827 -136.373 18.621 -2.001 4.899 -2.806 CZ2 HPE 32
3SD C30 C30 C 0 1 Y N N N N N 16.759 -136.248 17.580 -2.994 5.674 -2.239 CH HPE 33
3SD C20 C20 C 0 1 N N N N N N 10.678 -135.864 12.806 -4.937 -2.513 -0.155 C20 02N 34
3SD C21 C21 C 0 1 Y N N N N N 9.955 -134.540 12.993 -6.341 -2.209 0.299 C21 02N 35
3SD C22 C22 C 0 1 Y N N N N N 10.465 -133.402 12.392 -6.738 -2.534 1.583 C22 02N 36
3SD C24 C24 C 0 1 Y N N N N N 8.643 -132.118 13.290 -8.917 -1.651 1.133 C24 02N 37
3SD C26 C26 C 0 1 Y N N N N N 8.786 -134.476 13.733 -7.231 -1.601 -0.567 C26 02N 38
3SD N16 N16 N 0 1 N N N N N N 11.481 -136.184 13.976 -4.069 -1.372 0.144 N16 02N 39
3SD C23 C23 C 0 1 Y N N N N N 9.808 -132.187 12.548 -8.026 -2.255 2.000 C23 02N 40
3SD C27 C27 C 0 1 N N N N N N 7.923 -130.777 13.441 -10.322 -1.347 1.587 C27 02N 41
3SD C25 C25 C 0 1 Y N N N N N 8.132 -133.262 13.880 -8.519 -1.322 -0.150 C25 02N 42
3SD H4 H4 H 0 1 N N N N N N 12.529 -138.094 23.526 4.446 4.529 -0.196 H4 02J 43
3SD H6 H6 H 0 1 N N N N N N 13.344 -135.857 26.638 5.991 6.072 2.362 H6 02J 44
3SD H6A H6A H 0 1 N N N N N N 12.609 -137.481 26.416 7.479 5.115 2.162 H6A 02J 45
3SD H6B H6B H 0 1 N N N N N N 14.240 -137.134 25.747 6.677 5.822 0.739 H6B 02J 46
3SD H8 H8 H 0 1 N N N N N N 9.728 -137.461 19.384 2.049 0.025 -1.238 H8 02L 47
3SD HN7 HN7 H 0 1 N N N N N N 10.237 -135.129 20.968 3.277 0.213 1.416 HN7 02L 48
3SD H9 H9 H 0 1 N N N N N N 9.207 -134.462 18.974 2.236 -1.937 1.091 H9 02L 49
3SD H9A H9A H 0 1 N N N N N N 8.676 -135.710 17.770 1.475 -2.303 -0.476 H9A 02L 50
3SD HN34 HN34 H 0 0 N N N N N N 7.101 -133.864 18.967 3.615 -3.948 0.101 HN34 02L 51
3SD H36 H36 H 0 1 N N N N N N 5.247 -135.475 20.687 5.399 -3.464 -2.033 H36 02L 52
3SD H36A H36A H 0 0 N N N N N N 5.455 -133.693 20.839 6.176 -2.935 -0.522 H36A 02L 53
3SD H40 H40 H 0 1 N N N N N N 3.506 -135.364 17.388 4.835 -4.996 1.312 H40 02L 54
3SD H40A H40A H 0 0 N N N N N N 5.259 -135.663 17.640 6.064 -6.270 1.127 H40A 02L 55
3SD H40B H40B H 0 0 N N N N N N 4.051 -136.432 18.725 6.564 -4.574 1.324 H40B 02L 56
3SD H38 H38 H 0 1 N N N N N N 2.232 -133.978 18.987 4.697 -5.846 -2.309 H38 02L 57
3SD H38A H38A H 0 0 N N N N N N 2.762 -135.028 20.344 4.973 -7.013 -0.995 H38A 02L 58
3SD H38B H38B H 0 0 N N N N N N 3.048 -133.256 20.415 3.744 -5.739 -0.809 H38B 02L 59
3SD H39 H39 H 0 1 N N N N N N 3.861 -132.945 17.494 7.901 -4.724 -0.782 H39 02L 60
3SD H39A H39A H 0 0 N N N N N N 4.690 -132.199 18.902 7.400 -6.420 -0.979 H39A 02L 61
3SD H39B H39B H 0 0 N N N N N N 5.623 -133.198 17.736 7.124 -5.253 -2.293 H39B 02L 62
3SD HN13 HN13 H 0 0 N N N N N N 10.477 -138.028 17.463 -0.351 -1.181 -1.020 H HPE 63
3SD H12 H12 H 0 1 N N N N N N 12.705 -136.467 16.182 -1.870 -0.058 1.207 HA HPE 64
3SD H14 H14 H 0 1 N N N N N N 13.233 -138.556 15.053 -3.428 1.164 -0.339 HB2 HPE 65
3SD H14A H14A H 0 0 N N N N N N 11.800 -139.351 15.790 -2.298 0.843 -1.676 HB3 HPE 66
3SD H17 H17 H 0 1 N N N N N N 12.746 -138.821 18.053 -1.638 2.366 0.885 HG2 HPE 67
3SD H17A H17A H 0 0 N N N N N N 13.767 -139.941 17.077 -0.508 2.046 -0.452 HG3 HPE 68
3SD H28 H28 H 0 1 N N N N N N 15.373 -138.395 15.362 -3.470 3.939 0.614 HE1 HPE 69
3SD H32 H32 H 0 1 N N N N N N 14.017 -137.335 19.297 -0.758 3.173 -2.588 HE2 HPE 70
3SD H29 H29 H 0 1 N N N N N N 17.319 -136.874 15.600 -4.298 5.936 -0.564 HZ1 HPE 71
3SD H31 H31 H 0 1 N N N N N N 15.956 -135.801 19.528 -1.589 5.168 -3.768 HZ2 HPE 72
3SD H30 H30 H 0 1 N N N N N N 17.604 -135.585 17.694 -3.359 6.549 -2.757 HH HPE 73
3SD H20 H20 H 0 1 N N N N N N 9.935 -136.660 12.653 -4.569 -3.396 0.367 H20 02N 74
3SD H20A H20A H 0 0 N N N N N N 11.336 -135.792 11.928 -4.934 -2.699 -1.229 H20A 02N 75
3SD H22 H22 H 0 1 N N N N N N 11.369 -133.458 11.804 -6.041 -3.005 2.260 H22 02N 76
3SD H26 H26 H 0 1 N N N N N N 8.386 -135.367 14.193 -6.920 -1.344 -1.568 H26 02N 77
3SD HN16 HN16 H 0 0 N N N N N N 12.413 -135.830 14.056 -4.436 -0.583 0.573 HN16 02N 78
3SD H23 H23 H 0 1 N N N N N N 10.208 -131.295 12.089 -8.336 -2.509 3.003 H23 02N 79
3SD H27 H27 H 0 1 N N N N N N 7.199 -130.655 12.622 -10.967 -2.197 1.364 H27 02N 80
3SD H27A H27A H 0 0 N N N N N N 7.394 -130.752 14.405 -10.324 -1.161 2.661 H27A 02N 81
3SD H27B H27B H 0 0 N N N N N N 8.659 -129.960 13.404 -10.690 -0.465 1.064 H27B 02N 82
3SD H25 H25 H 0 1 N N N N N N 7.221 -133.208 14.457 -9.216 -0.851 -0.827 H25 02N 83
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3SD C3 C4 SING Y N 1
3SD C4 C5 DOUB Y N 2
3SD C4 H4 SING N N 3
3SD O1 C5 SING Y N 4
3SD C5 C6 SING N N 5
3SD C6 H6 SING N N 6
3SD C6 H6A SING N N 7
3SD C6 H6B SING N N 8
3SD C10 C8 SING N N 9
3SD C9 C8 SING N N 10
3SD C8 N7 SING N N 11
3SD C8 H8 SING N N 12
3SD N13 C10 SING N N 13
3SD O11 C10 DOUB N N 14
3SD N16 C15 SING N N 15
3SD O19 C15 DOUB N N 16
3SD C15 C12 SING N N 17
3SD C14 C17 SING N N 18
3SD C17 C18 SING N N 19
3SD C17 H17 SING N N 20
3SD C17 H17A SING N N 21
3SD C20 C21 SING N N 22
3SD C20 N16 SING N N 23
3SD C20 H20 SING N N 24
3SD C20 H20A SING N N 25
3SD C22 C21 DOUB Y N 26
3SD C21 C26 SING Y N 27
3SD C22 C23 SING Y N 28
3SD C22 H22 SING N N 29
3SD C23 C24 DOUB Y N 30
3SD C24 C27 SING N N 31
3SD C24 C25 SING Y N 32
3SD C26 C25 DOUB Y N 33
3SD C26 H26 SING N N 34
3SD C28 C29 DOUB Y N 35
3SD C28 C18 SING Y N 36
3SD C28 H28 SING N N 37
3SD N2 O1 SING Y N 38
3SD C3 N2 DOUB Y N 39
3SD C41 C3 SING N N 40
3SD N7 C41 SING N N 41
3SD O42 C41 DOUB N N 42
3SD N7 HN7 SING N N 43
3SD C9 C33 SING N N 44
3SD C9 H9 SING N N 45
3SD C9 H9A SING N N 46
3SD N34 C33 SING N N 47
3SD C33 O35 DOUB N N 48
3SD N34 C36 SING N N 49
3SD N34 HN34 SING N N 50
3SD C37 C36 SING N N 51
3SD C36 H36 SING N N 52
3SD C36 H36A SING N N 53
3SD C40 C37 SING N N 54
3SD C39 C37 SING N N 55
3SD C37 C38 SING N N 56
3SD C40 H40 SING N N 57
3SD C40 H40A SING N N 58
3SD C40 H40B SING N N 59
3SD C38 H38 SING N N 60
3SD C38 H38A SING N N 61
3SD C38 H38B SING N N 62
3SD C39 H39 SING N N 63
3SD C39 H39A SING N N 64
3SD C39 H39B SING N N 65
3SD C12 N13 SING N N 66
3SD N13 HN13 SING N N 67
3SD C14 C12 SING N N 68
3SD C12 H12 SING N N 69
3SD C14 H14 SING N N 70
3SD C14 H14A SING N N 71
3SD C18 C32 DOUB Y N 72
3SD C29 C30 SING Y N 73
3SD C29 H29 SING N N 74
3SD C30 C31 DOUB Y N 75
3SD C30 H30 SING N N 76
3SD C32 C31 SING Y N 77
3SD C31 H31 SING N N 78
3SD C32 H32 SING N N 79
3SD N16 HN16 SING N N 80
3SD C23 H23 SING N N 81
3SD C27 H27 SING N N 82
3SD C27 H27A SING N N 83
3SD C27 H27B SING N N 84
3SD C25 H25 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3SD SMILES ACDLabs 12.01 O=C(NC(C(=O)NC(C(=O)NCc1ccc(cc1)C)CCc2ccccc2)CC(=O)NCC(C)(C)C)c3noc(c3)C
3SD InChI InChI 1.03 InChI=1S/C32H41N5O5/c1-21-11-13-24(14-12-21)19-33-29(39)25(16-15-23-9-7-6-8-10-23)35-30(40)26(18-28(38)34-20-32(3,4)5)36-31(41)27-17-22(2)42-37-27/h6-14,17,25-26H,15-16,18-20H2,1-5H3,(H,33,39)(H,34,38)(H,35,40)(H,36,41)/t25-,26-/m0/s1
3SD InChIKey InChI 1.03 KVWOEKNSWWTEAJ-UIOOFZCWSA-N
3SD SMILES_CANONICAL CACTVS 3.370 Cc1onc(c1)C(=O)N[C@@H](CC(=O)NCC(C)(C)C)C(=O)N[C@@H](CCc2ccccc2)C(=O)NCc3ccc(C)cc3
3SD SMILES CACTVS 3.370 Cc1onc(c1)C(=O)N[CH](CC(=O)NCC(C)(C)C)C(=O)N[CH](CCc2ccccc2)C(=O)NCc3ccc(C)cc3
3SD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1)CNC(=O)[C@H](CCc2ccccc2)NC(=O)[C@H](CC(=O)NCC(C)(C)C)NC(=O)c3cc(on3)C
3SD SMILES "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1)CNC(=O)C(CCc2ccccc2)NC(=O)C(CC(=O)NCC(C)(C)C)NC(=O)c3cc(on3)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3SD "SYSTEMATIC NAME" ACDLabs 12.01 N~4~-(2,2-dimethylpropyl)-N~1~-{(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}-N~2~-[(5-methyl-1,2-oxazol-3-yl)carbonyl]-L-aspartamide
3SD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N'-(2,2-dimethylpropyl)-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]-N-[(2S)-1-[(4-methylphenyl)methylamino]-1-oxidanylidene-4-phenyl-butan-2-yl]butanediamide"
#
_pdbx_chem_comp_audit.comp_id 3SD
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-06-15
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3SD C4 C 12.250 5.342 1
3SD C5 C 13.717 5.654 2
3SD C6 C 14.327 7.024 3
3SD O1 O 14.467 4.355 4
3SD N2 N 13.463 3.240 5
3SD C3 C 12.093 3.850 6
3SD C41 C 10.794 3.100 7
3SD O42 O 10.794 1.601 8
3SD C8 C 8.196 3.100 9
3SD C10 C 8.196 1.601 10
3SD N7 N 9.495 3.850 11
3SD C9 C 6.897 3.850 12
3SD C33 C 6.897 5.351 13
3SD O35 O 8.196 6.101 14
3SD N34 N 5.598 6.101 15
3SD C36 C 5.598 7.601 16
3SD C37 C 4.299 8.351 17
3SD C40 C 3.000 9.101 18
3SD C38 C 3.549 7.051 19
3SD C39 C 5.049 9.649 20
3SD O11 O 9.495 0.851 21
3SD N13 N 6.897 0.851 22
3SD C12 C 6.897 -0.649 23
3SD C15 C 5.598 -1.399 24
3SD O19 O 4.299 -0.649 25
3SD C14 C 8.196 -1.399 26
3SD C17 C 9.495 -0.649 27
3SD C18 C 10.794 -1.399 28
3SD C28 C 10.794 -2.900 29
3SD C32 C 12.093 -0.649 30
3SD C29 C 12.093 -3.650 31
3SD C31 C 13.392 -1.399 32
3SD C30 C 13.392 -2.900 33
3SD C20 C 4.299 -3.650 34
3SD C21 C 4.299 -5.149 35
3SD C22 C 3.000 -5.899 36
3SD C24 C 4.299 -8.149 37
3SD C26 C 5.598 -5.899 38
3SD N16 N 5.598 -2.900 39
3SD C23 C 3.000 -7.399 40
3SD C27 C 4.299 -9.649 41
3SD C25 C 5.598 -7.399 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3SD C3 C4 SINGLE NONE 1
3SD C4 C5 DOUBLE NONE 2
3SD O1 C5 SINGLE NONE 3
3SD C5 C6 SINGLE NONE 4
3SD C10 C8 SINGLE NONE 5
3SD C8 C9 SINGLE BEGINDASH 6
3SD C8 N7 SINGLE NONE 7
3SD N13 C10 SINGLE NONE 8
3SD O11 C10 DOUBLE NONE 9
3SD N16 C15 SINGLE NONE 10
3SD O19 C15 DOUBLE NONE 11
3SD C15 C12 SINGLE NONE 12
3SD C14 C17 SINGLE NONE 13
3SD C17 C18 SINGLE NONE 14
3SD C20 C21 SINGLE NONE 15
3SD C20 N16 SINGLE NONE 16
3SD C22 C21 DOUBLE NONE 17
3SD C21 C26 SINGLE NONE 18
3SD C22 C23 SINGLE NONE 19
3SD C23 C24 DOUBLE NONE 20
3SD C24 C27 SINGLE NONE 21
3SD C24 C25 SINGLE NONE 22
3SD C26 C25 DOUBLE NONE 23
3SD C28 C29 DOUBLE NONE 24
3SD C28 C18 SINGLE NONE 25
3SD N2 O1 SINGLE NONE 26
3SD C3 N2 DOUBLE NONE 27
3SD C41 C3 SINGLE NONE 28
3SD N7 C41 SINGLE NONE 29
3SD O42 C41 DOUBLE NONE 30
3SD C9 C33 SINGLE NONE 31
3SD N34 C33 SINGLE NONE 32
3SD C33 O35 DOUBLE NONE 33
3SD N34 C36 SINGLE NONE 34
3SD C37 C36 SINGLE NONE 35
3SD C40 C37 SINGLE NONE 36
3SD C39 C37 SINGLE NONE 37
3SD C37 C38 SINGLE NONE 38
3SD C12 N13 SINGLE NONE 39
3SD C12 C14 SINGLE BEGINWEDGE 40
3SD C18 C32 DOUBLE NONE 41
3SD C29 C30 SINGLE NONE 42
3SD C30 C31 DOUBLE NONE 43
3SD C32 C31 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3SD MurckoScaffold S1 scaffold 'O=C(CNC(=O)c1ccon1)N[C@@H](CCc1ccccc1)C(=O)NCc1ccccc1' InChI=1S/C23H24N4O4/c28-21(16-25-23(30)20-13-14-31-27-20)26-19(12-11-17-7-3-1-4-8-17)22(29)24-15-18-9-5-2-6-10-18/h1-10,13-14,19H,11-12,15-16H2,(H,24,29)(H,25,30)(H,26,28)/t19-/m0/s1 VHSGLILXDZEXFH-IBGZPJMESA-N
3SD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
3SD isoxazole F2 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
3SD peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
3SD phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3SD C4 S1 1
3SD C5 S1 1
3SD O1 S1 1
3SD N2 S1 1
3SD C3 S1 1
3SD C41 S1 1
3SD O42 S1 1
3SD C8 S1 1
3SD C10 S1 1
3SD N7 S1 1
3SD O11 S1 1
3SD N13 S1 1
3SD C12 S1 1
3SD C15 S1 1
3SD O19 S1 1
3SD C14 S1 1
3SD C17 S1 1
3SD C18 S1 1
3SD C28 S1 1
3SD C32 S1 1
3SD C29 S1 1
3SD C31 S1 1
3SD C30 S1 1
3SD C20 S1 1
3SD C21 S1 1
3SD C22 S1 1
3SD C24 S1 1
3SD C26 S1 1
3SD N16 S1 1
3SD C23 S1 1
3SD C25 S1 1
3SD N7 F1 1
3SD C41 F1 1
3SD O42 F1 1
3SD C3 F1 1
3SD N34 F1 2
3SD C33 F1 2
3SD O35 F1 2
3SD C9 F1 2
3SD N13 F1 3
3SD C10 F1 3
3SD O11 F1 3
3SD C8 F1 3
3SD N16 F1 4
3SD C15 F1 4
3SD O19 F1 4
3SD C12 F1 4
3SD C5 F2 1
3SD C4 F2 1
3SD C3 F2 1
3SD N2 F2 1
3SD O1 F2 1
3SD O11 F3 1
3SD C10 F3 1
3SD C8 F3 1
3SD N7 F3 1
3SD O19 F3 2
3SD C15 F3 2
3SD C12 F3 2
3SD N13 F3 2
3SD C18 F4 1
3SD C28 F4 1
3SD C29 F4 1
3SD C30 F4 1
3SD C31 F4 1
3SD C32 F4 1
3SD C21 F4 2
3SD C22 F4 2
3SD C23 F4 2
3SD C24 F4 2
3SD C25 F4 2
3SD C26 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 3SD
_pdbe_chem_comp_rdkit_properties.exactmw 575.311
_pdbe_chem_comp_rdkit_properties.amw 575.710
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 83
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.406
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 304.396
_pdbe_chem_comp_rdkit_properties.tpsa 142.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.103
_pdbe_chem_comp_rdkit_properties.CrippenMR 157.965
_pdbe_chem_comp_rdkit_properties.chi0v 20.277
_pdbe_chem_comp_rdkit_properties.chi1v 10.466
_pdbe_chem_comp_rdkit_properties.chi2v 3.745
_pdbe_chem_comp_rdkit_properties.chi3v 3.745
_pdbe_chem_comp_rdkit_properties.chi4v 2.131
_pdbe_chem_comp_rdkit_properties.chi0n 61.277
_pdbe_chem_comp_rdkit_properties.chi1n 30.755
_pdbe_chem_comp_rdkit_properties.chi2n 3.745
_pdbe_chem_comp_rdkit_properties.chi3n 3.745
_pdbe_chem_comp_rdkit_properties.chi4n 2.131
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.470
_pdbe_chem_comp_rdkit_properties.kappa1 7.723
_pdbe_chem_comp_rdkit_properties.kappa2 14.955
_pdbe_chem_comp_rdkit_properties.kappa3 10.835
_pdbe_chem_comp_rdkit_properties.Phi 2.750
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3SD UniChem PDBe 3SD
3SD UniChem ZINC ZINC000098208465
3SD UniChem PubChem 57149552
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3SD C4 -3.508 -1.068 3.962 ETKDGv3 1
3SD C5 -4.013 -0.476 5.032 ETKDGv3 2
3SD C6 -5.048 -1.044 5.943 ETKDGv3 3
3SD O1 -3.436 0.777 5.171 ETKDGv3 4
3SD N2 -2.539 0.972 4.148 ETKDGv3 5
3SD C3 -2.556 -0.098 3.421 ETKDGv3 6
3SD C41 -1.747 -0.275 2.207 ETKDGv3 7
3SD O42 -1.838 -1.351 1.556 ETKDGv3 8
3SD C8 -0.183 0.705 0.464 ETKDGv3 9
3SD C10 1.146 0.025 0.643 ETKDGv3 10
3SD N7 -0.875 0.772 1.753 ETKDGv3 11
3SD C9 0.013 2.115 -0.126 ETKDGv3 12
3SD C33 -1.299 2.819 -0.323 ETKDGv3 13
3SD O35 -1.545 3.867 0.334 ETKDGv3 14
3SD N34 -2.265 2.298 -1.247 ETKDGv3 15
3SD C36 -3.625 2.827 -1.369 ETKDGv3 16
3SD C37 -4.630 2.098 -0.433 ETKDGv3 17
3SD C40 -4.329 2.412 1.046 ETKDGv3 18
3SD C38 -4.570 0.572 -0.655 ETKDGv3 19
3SD C39 -6.054 2.593 -0.759 ETKDGv3 20
3SD O11 2.036 0.574 1.349 ETKDGv3 21
3SD N13 1.401 -1.245 0.023 ETKDGv3 22
3SD C12 2.759 -1.793 -0.068 ETKDGv3 23
3SD C15 3.610 -0.910 -0.944 ETKDGv3 24
3SD O19 3.185 -0.557 -2.079 ETKDGv3 25
3SD C14 2.753 -3.264 -0.539 ETKDGv3 26
3SD C17 2.308 -3.470 -1.998 ETKDGv3 27
3SD C18 2.133 -4.935 -2.293 ETKDGv3 28
3SD C28 3.295 -5.744 -2.740 ETKDGv3 29
3SD C32 0.946 -5.539 -2.097 ETKDGv3 30
3SD C29 3.156 -7.056 -2.967 ETKDGv3 31
3SD C31 0.796 -6.986 -2.354 ETKDGv3 32
3SD C30 1.845 -7.707 -2.768 ETKDGv3 33
3SD C20 5.530 0.736 -1.072 ETKDGv3 34
3SD C21 4.698 1.972 -0.859 ETKDGv3 35
3SD C22 4.597 2.524 0.362 ETKDGv3 36
3SD C24 2.983 4.188 -0.425 ETKDGv3 37
3SD C26 3.912 2.543 -1.981 ETKDGv3 38
3SD N16 4.872 -0.421 -0.468 ETKDGv3 39
3SD C23 3.714 3.688 0.586 ETKDGv3 40
3SD C27 2.091 5.373 -0.207 ETKDGv3 41
3SD C25 3.105 3.591 -1.776 ETKDGv3 42
3SD H4 -3.759 -2.049 3.580 ETKDGv3 43
3SD H6 -5.205 -0.364 6.805 ETKDGv3 44
3SD H6A -6.006 -1.161 5.393 ETKDGv3 45
3SD H6B -4.716 -2.035 6.319 ETKDGv3 46
3SD H8 -0.796 0.121 -0.257 ETKDGv3 47
3SD HN7 -0.690 1.586 2.383 ETKDGv3 48
3SD H9 0.526 2.040 -1.109 ETKDGv3 49
3SD H9A 0.657 2.719 0.549 ETKDGv3 50
3SD HN34 -1.992 1.499 -1.863 ETKDGv3 51
3SD H36 -3.630 3.921 -1.172 ETKDGv3 52
3SD H36A -3.950 2.698 -2.425 ETKDGv3 53
3SD H40 -5.089 1.945 1.709 ETKDGv3 54
3SD H40A -3.339 2.015 1.343 ETKDGv3 55
3SD H40B -4.337 3.509 1.224 ETKDGv3 56
3SD H38 -3.577 0.166 -0.365 ETKDGv3 57
3SD H38A -5.339 0.056 -0.040 ETKDGv3 58
3SD H38B -4.752 0.326 -1.723 ETKDGv3 59
3SD H39 -6.803 2.101 -0.102 ETKDGv3 60
3SD H39A -6.317 2.364 -1.814 ETKDGv3 61
3SD H39B -6.129 3.692 -0.611 ETKDGv3 62
3SD HN13 0.592 -1.778 -0.369 ETKDGv3 63
3SD H12 3.190 -1.797 0.958 ETKDGv3 64
3SD H14 3.777 -3.682 -0.417 ETKDGv3 65
3SD H14A 2.082 -3.841 0.136 ETKDGv3 66
3SD H17 1.360 -2.929 -2.204 ETKDGv3 67
3SD H17A 3.077 -3.058 -2.686 ETKDGv3 68
3SD H28 4.260 -5.275 -2.882 ETKDGv3 69
3SD H32 0.090 -4.975 -1.746 ETKDGv3 70
3SD H29 4.004 -7.644 -3.294 ETKDGv3 71
3SD H31 -0.164 -7.463 -2.203 ETKDGv3 72
3SD H30 1.736 -8.768 -2.954 ETKDGv3 73
3SD H20 6.528 0.880 -0.604 ETKDGv3 74
3SD H20A 5.697 0.549 -2.155 ETKDGv3 75
3SD H22 5.145 2.110 1.200 ETKDGv3 76
3SD H26 3.984 2.110 -2.971 ETKDGv3 77
3SD HN16 5.289 -0.836 0.395 ETKDGv3 78
3SD H23 3.654 4.120 1.577 ETKDGv3 79
3SD H27 1.611 5.323 0.795 ETKDGv3 80
3SD H27A 1.285 5.399 -0.970 ETKDGv3 81
3SD H27B 2.688 6.305 -0.279 ETKDGv3 82
3SD H25 2.535 3.997 -2.602 ETKDGv3 83
#