data_3YJ
#
_chem_comp.id 3YJ
_chem_comp.name 11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H53 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-07
_chem_comp.pdbx_modified_date 2022-07-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.779
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3YJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7R62
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3YJ N1 N1 N 0 1 N N N N N N -34.439 8.743 14.290 10.902 -0.201 0.230 N1 3YJ 1
3YJ C4 C1 C 0 1 Y N N N N N -27.530 2.023 26.698 -4.298 -3.605 0.775 C4 3YJ 2
3YJ C5 C2 C 0 1 Y N N N N N -28.826 1.622 26.870 -4.497 -2.242 0.601 C5 3YJ 3
3YJ C6 C3 C 0 1 Y N N N N N -29.157 0.194 27.048 -5.057 -1.780 -0.572 C6 3YJ 4
3YJ C7 C4 C 0 1 N N N N N N -29.999 2.755 26.789 -4.095 -1.328 1.728 C7 3YJ 5
3YJ C8 C5 C 0 1 N N R N N N -31.427 2.152 26.646 -4.009 0.124 1.260 C8 3YJ 6
3YJ C10 C6 C 0 1 N N S N N N -30.563 -0.172 27.131 -5.264 -0.316 -0.830 C10 3YJ 7
3YJ C13 C7 C 0 1 N N N N N N -32.360 -2.019 28.027 -6.697 1.455 -1.901 C13 3YJ 8
3YJ C15 C8 C 0 1 N N N N N N -34.044 1.384 27.919 -5.469 2.899 1.326 C15 3YJ 9
3YJ C17 C9 C 0 1 N N S N N N -34.654 -1.059 28.264 -6.902 3.658 -0.556 C17 3YJ 10
3YJ C20 C10 C 0 1 N N N N N N -32.025 3.043 24.357 -1.515 0.058 1.138 C20 3YJ 11
3YJ C21 C11 C 0 1 N N N N N N -32.161 2.787 22.841 -0.304 0.234 0.219 C21 3YJ 12
3YJ C22 C12 C 0 1 N N N N N N -32.503 4.007 22.029 0.980 -0.009 1.015 C22 3YJ 13
3YJ C24 C13 C 0 1 N N N N N N -32.700 4.901 19.706 3.474 -0.075 0.893 C24 3YJ 14
3YJ C26 C14 C 0 1 N N N N N N -32.940 5.627 17.334 5.969 -0.142 0.770 C26 3YJ 15
3YJ C28 C15 C 0 1 N N N N N N -32.750 7.415 15.645 8.464 -0.208 0.648 C28 3YJ 16
3YJ C1 C16 C 0 1 Y N N N N N -28.104 -0.709 27.131 -5.432 -2.681 -1.561 C1 3YJ 17
3YJ C11 C17 C 0 1 N N S N N N -33.046 0.521 27.542 -5.369 1.929 0.144 C11 3YJ 18
3YJ C12 C18 C 0 1 N N S N N N -33.304 -0.918 28.466 -6.743 2.142 -0.552 C12 3YJ 19
3YJ C14 C19 C 0 1 N N N N N N -30.776 -1.594 28.042 -6.517 -0.054 -1.652 C14 3YJ 20
3YJ C16 C20 C 0 1 N N N N N N -35.356 0.452 28.232 -6.127 4.154 0.690 C16 3YJ 21
3YJ C18 C21 C 0 1 N N N N N N -32.961 -0.578 29.933 -7.841 1.512 0.308 C18 3YJ 22
3YJ C19 C22 C 0 1 N N N N N N -31.555 1.808 25.137 -2.799 0.300 0.342 C19 3YJ 23
3YJ C2 C23 C 0 1 Y N N N N N -26.744 -0.339 27.005 -5.239 -4.035 -1.387 C2 3YJ 24
3YJ C23 C24 C 0 1 N N N N N N -32.395 3.661 20.536 2.191 0.167 0.097 C23 3YJ 25
3YJ C25 C25 C 0 1 N N N N N N -32.075 4.854 18.313 4.685 0.100 -0.026 C25 3YJ 26
3YJ C27 C26 C 0 1 N N N N N N -32.391 7.016 17.065 7.180 0.034 -0.149 C27 3YJ 27
3YJ C29 C27 C 0 1 N N N N N N -33.621 8.650 15.488 9.656 -0.035 -0.257 C29 3YJ 28
3YJ C3 C28 C 0 1 Y N N N N N -26.488 1.084 26.781 -4.666 -4.502 -0.213 C3 3YJ 29
3YJ C30 C29 C 0 1 N N N N N N -35.296 9.895 14.066 11.096 -0.550 1.640 C30 3YJ 30
3YJ C31 C30 C 0 1 N N N N N N -34.399 7.659 13.319 12.061 -0.039 -0.651 C31 3YJ 31
3YJ C32 C31 C 0 1 N N N N N N -34.142 8.169 11.901 12.521 1.420 -0.625 C32 3YJ 32
3YJ C33 C32 C 0 1 N N N N N N -34.914 7.353 10.870 13.731 1.589 -1.546 C33 3YJ 33
3YJ C9 C33 C 0 1 N N R N N N -31.561 0.984 27.572 -5.290 0.457 0.495 C9 3YJ 34
3YJ O1 O1 O 0 1 N N N N N N -25.151 1.421 26.652 -4.466 -5.834 -0.034 O1 3YJ 35
3YJ O2 O2 O 0 1 N N N N N N -35.371 -1.801 29.261 -8.283 4.010 -0.454 O2 3YJ 36
3YJ O3 O3 O 0 1 N N N N N N -33.616 9.501 16.314 9.495 0.253 -1.424 O3 3YJ 37
3YJ H1 H1 H 0 1 N N N N N N -27.307 3.061 26.498 -3.849 -3.968 1.687 H1 3YJ 38
3YJ H2 H2 H 0 1 N N N N N N -29.803 3.399 25.919 -4.831 -1.403 2.528 H2 3YJ 39
3YJ H3 H3 H 0 1 N N N N N N -29.965 3.359 27.708 -3.122 -1.637 2.109 H3 3YJ 40
3YJ H4 H4 H 0 1 N N N N N N -32.170 2.921 26.904 -3.915 0.784 2.124 H4 3YJ 41
3YJ H5 H5 H 0 1 N N N N N N -30.877 -0.453 26.115 -4.415 0.044 -1.411 H5 3YJ 42
3YJ H6 H6 H 0 1 N N N N N N -32.628 -2.314 27.002 -7.629 1.633 -2.437 H6 3YJ 43
3YJ H7 H7 H 0 1 N N N N N N -32.493 -2.877 28.702 -5.857 1.837 -2.481 H7 3YJ 44
3YJ H8 H8 H 0 1 N N N N N N -33.747 1.941 28.820 -6.104 2.487 2.111 H8 3YJ 45
3YJ H9 H9 H 0 1 N N N N N N -34.264 2.092 27.106 -4.481 3.138 1.717 H9 3YJ 46
3YJ H10 H10 H 0 1 N N N N N N -34.841 -1.508 27.278 -6.471 4.080 -1.464 H10 3YJ 47
3YJ H11 H11 H 0 1 N N N N N N -31.296 3.852 24.511 -1.522 -0.955 1.540 H11 3YJ 48
3YJ H12 H12 H 0 1 N N N N N N -33.005 3.352 24.749 -1.455 0.774 1.958 H12 3YJ 49
3YJ H13 H13 H 0 1 N N N N N N -32.954 2.040 22.689 -0.363 -0.482 -0.601 H13 3YJ 50
3YJ H14 H14 H 0 1 N N N N N N -31.205 2.387 22.473 -0.297 1.247 -0.183 H14 3YJ 51
3YJ H15 H15 H 0 1 N N N N N N -31.802 4.819 22.271 1.039 0.707 1.835 H15 3YJ 52
3YJ H16 H16 H 0 1 N N N N N N -33.530 4.328 22.260 0.973 -1.022 1.417 H16 3YJ 53
3YJ H17 H17 H 0 1 N N N N N N -32.310 5.782 20.236 3.534 0.640 1.713 H17 3YJ 54
3YJ H18 H18 H 0 1 N N N N N N -33.791 4.991 19.598 3.467 -1.088 1.294 H18 3YJ 55
3YJ H19 H19 H 0 1 N N N N N N -33.953 5.720 17.752 6.028 0.574 1.590 H19 3YJ 56
3YJ H20 H20 H 0 1 N N N N N N -32.985 5.073 16.385 5.962 -1.155 1.172 H20 3YJ 57
3YJ H21 H21 H 0 1 N N N N N N -33.283 6.570 15.185 8.523 0.507 1.468 H21 3YJ 58
3YJ H22 H22 H 0 1 N N N N N N -31.811 7.597 15.101 8.456 -1.222 1.049 H22 3YJ 59
3YJ H23 H23 H 0 1 N N N N N N -28.336 -1.750 27.301 -5.879 -2.317 -2.474 H23 3YJ 60
3YJ H24 H24 H 0 1 N N N N N N -33.241 0.212 26.504 -4.544 2.209 -0.511 H24 3YJ 61
3YJ H25 H25 H 0 1 N N N N N N -30.175 -2.404 27.604 -6.433 -0.569 -2.609 H25 3YJ 62
3YJ H26 H26 H 0 1 N N N N N N -30.453 -1.417 29.079 -7.385 -0.436 -1.115 H26 3YJ 63
3YJ H27 H27 H 0 1 N N N N N N -35.814 0.707 29.199 -6.815 4.616 1.399 H27 3YJ 64
3YJ H28 H28 H 0 1 N N N N N N -36.111 0.532 27.436 -5.360 4.869 0.393 H28 3YJ 65
3YJ H29 H29 H 0 1 N N N N N N -33.111 -1.468 30.561 -7.686 0.435 0.364 H29 3YJ 66
3YJ H30 H30 H 0 1 N N N N N N -31.911 -0.256 29.999 -7.806 1.937 1.311 H30 3YJ 67
3YJ H31 H31 H 0 1 N N N N N N -33.616 0.233 30.284 -8.814 1.716 -0.139 H31 3YJ 68
3YJ H32 H32 H 0 1 N N N N N N -32.286 0.996 25.009 -2.858 -0.415 -0.478 H32 3YJ 69
3YJ H33 H33 H 0 1 N N N N N N -30.576 1.485 24.753 -2.791 1.313 -0.060 H33 3YJ 70
3YJ H34 H34 H 0 1 N N N N N N -25.945 -1.062 27.070 -5.533 -4.729 -2.161 H34 3YJ 71
3YJ H35 H35 H 0 1 N N N N N N -33.117 2.868 20.290 2.131 -0.549 -0.724 H35 3YJ 72
3YJ H36 H36 H 0 1 N N N N N N -31.376 3.312 20.313 2.198 1.180 -0.305 H36 3YJ 73
3YJ H37 H37 H 0 1 N N N N N N -31.996 3.808 17.983 4.626 -0.615 -0.846 H37 3YJ 74
3YJ H38 H38 H 0 1 N N N N N N -31.072 5.304 18.348 4.693 1.114 -0.428 H38 3YJ 75
3YJ H39 H39 H 0 1 N N N N N N -31.297 7.011 17.183 7.120 -0.682 -0.969 H39 3YJ 76
3YJ H40 H40 H 0 1 N N N N N N -32.833 7.732 17.774 7.187 1.047 -0.550 H40 3YJ 77
3YJ H41 H41 H 0 1 N N N N N N -35.189 10.601 14.903 11.106 -1.634 1.748 H41 3YJ 78
3YJ H42 H42 H 0 1 N N N N N N -35.005 10.392 13.129 12.045 -0.141 1.987 H42 3YJ 79
3YJ H43 H43 H 0 1 N N N N N N -36.343 9.565 13.996 10.282 -0.133 2.233 H43 3YJ 80
3YJ H44 H44 H 0 1 N N N N N N -35.364 7.131 13.337 12.871 -0.682 -0.308 H44 3YJ 81
3YJ H45 H45 H 0 1 N N N N N N -33.594 6.963 13.597 11.785 -0.315 -1.669 H45 3YJ 82
3YJ H46 H46 H 0 1 N N N N N N -33.066 8.096 11.683 11.710 2.063 -0.969 H46 3YJ 83
3YJ H47 H47 H 0 1 N N N N N N -34.458 9.220 11.836 12.797 1.696 0.393 H47 3YJ 84
3YJ H48 H48 H 0 1 N N N N N N -34.708 7.744 9.863 13.455 1.314 -2.563 H48 3YJ 85
3YJ H49 H49 H 0 1 N N N N N N -34.600 6.300 10.926 14.059 2.629 -1.527 H49 3YJ 86
3YJ H50 H50 H 0 1 N N N N N N -35.992 7.425 11.078 14.542 0.947 -1.202 H50 3YJ 87
3YJ H51 H51 H 0 1 N N N N N N -31.305 1.293 28.596 -6.158 0.155 1.081 H51 3YJ 88
3YJ H52 H52 H 0 1 N N N N N N -24.617 0.640 26.740 -5.210 -6.292 0.382 H52 3YJ 89
3YJ H53 H53 H 0 1 N N N N N N -35.011 -2.678 29.324 -8.447 4.964 -0.451 H53 3YJ 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3YJ C33 C32 SING N N 1
3YJ C32 C31 SING N N 2
3YJ C31 N1 SING N N 3
3YJ C30 N1 SING N N 4
3YJ N1 C29 SING N N 5
3YJ C29 C28 SING N N 6
3YJ C29 O3 DOUB N N 7
3YJ C28 C27 SING N N 8
3YJ C27 C26 SING N N 9
3YJ C26 C25 SING N N 10
3YJ C25 C24 SING N N 11
3YJ C24 C23 SING N N 12
3YJ C23 C22 SING N N 13
3YJ C22 C21 SING N N 14
3YJ C21 C20 SING N N 15
3YJ C20 C19 SING N N 16
3YJ C19 C8 SING N N 17
3YJ C8 C7 SING N N 18
3YJ C8 C9 SING N N 19
3YJ O1 C3 SING N N 20
3YJ C4 C3 DOUB Y N 21
3YJ C4 C5 SING Y N 22
3YJ C3 C2 SING Y N 23
3YJ C7 C5 SING N N 24
3YJ C5 C6 DOUB Y N 25
3YJ C2 C1 DOUB Y N 26
3YJ C6 C1 SING Y N 27
3YJ C6 C10 SING N N 28
3YJ C10 C9 SING N N 29
3YJ C10 C14 SING N N 30
3YJ C11 C9 SING N N 31
3YJ C11 C15 SING N N 32
3YJ C11 C12 SING N N 33
3YJ C15 C16 SING N N 34
3YJ C13 C14 SING N N 35
3YJ C13 C12 SING N N 36
3YJ C16 C17 SING N N 37
3YJ C17 C12 SING N N 38
3YJ C17 O2 SING N N 39
3YJ C12 C18 SING N N 40
3YJ C4 H1 SING N N 41
3YJ C7 H2 SING N N 42
3YJ C7 H3 SING N N 43
3YJ C8 H4 SING N N 44
3YJ C10 H5 SING N N 45
3YJ C13 H6 SING N N 46
3YJ C13 H7 SING N N 47
3YJ C15 H8 SING N N 48
3YJ C15 H9 SING N N 49
3YJ C17 H10 SING N N 50
3YJ C20 H11 SING N N 51
3YJ C20 H12 SING N N 52
3YJ C21 H13 SING N N 53
3YJ C21 H14 SING N N 54
3YJ C22 H15 SING N N 55
3YJ C22 H16 SING N N 56
3YJ C24 H17 SING N N 57
3YJ C24 H18 SING N N 58
3YJ C26 H19 SING N N 59
3YJ C26 H20 SING N N 60
3YJ C28 H21 SING N N 61
3YJ C28 H22 SING N N 62
3YJ C1 H23 SING N N 63
3YJ C11 H24 SING N N 64
3YJ C14 H25 SING N N 65
3YJ C14 H26 SING N N 66
3YJ C16 H27 SING N N 67
3YJ C16 H28 SING N N 68
3YJ C18 H29 SING N N 69
3YJ C18 H30 SING N N 70
3YJ C18 H31 SING N N 71
3YJ C19 H32 SING N N 72
3YJ C19 H33 SING N N 73
3YJ C2 H34 SING N N 74
3YJ C23 H35 SING N N 75
3YJ C23 H36 SING N N 76
3YJ C25 H37 SING N N 77
3YJ C25 H38 SING N N 78
3YJ C27 H39 SING N N 79
3YJ C27 H40 SING N N 80
3YJ C30 H41 SING N N 81
3YJ C30 H42 SING N N 82
3YJ C30 H43 SING N N 83
3YJ C31 H44 SING N N 84
3YJ C31 H45 SING N N 85
3YJ C32 H46 SING N N 86
3YJ C32 H47 SING N N 87
3YJ C33 H48 SING N N 88
3YJ C33 H49 SING N N 89
3YJ C33 H50 SING N N 90
3YJ C9 H51 SING N N 91
3YJ O1 H52 SING N N 92
3YJ O2 H53 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3YJ SMILES ACDLabs 12.01 CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(O)ccc2C2CCC3(C)C(CCC3O)C21
3YJ InChI InChI 1.03 InChI=1S/C33H53NO3/c1-4-21-34(3)31(37)14-12-10-8-6-5-7-9-11-13-24-22-25-23-26(35)15-16-27(25)28-19-20-33(2)29(32(24)28)17-18-30(33)36/h15-16,23-24,28-30,32,35-36H,4-14,17-22H2,1-3H3/t24-,28-,29+,30+,32-,33+/m1/s1
3YJ InChIKey InChI 1.03 UUJHTDRJNXJHMK-XEXYCPDTSA-N
3YJ SMILES_CANONICAL CACTVS 3.385 CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(O)ccc2[C@H]3CC[C@]4(C)[C@@H](O)CC[C@H]4[C@H]13
3YJ SMILES CACTVS 3.385 CCCN(C)C(=O)CCCCCCCCCC[CH]1Cc2cc(O)ccc2[CH]3CC[C]4(C)[CH](O)CC[CH]4[CH]13
3YJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3[C@@H]1[C@@H]4CC[C@@H]([C@]4(CC3)C)O)O
3YJ SMILES "OpenEye OEToolkits" 2.0.7 CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(ccc2C3C1C4CCC(C4(CC3)C)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3YJ "SYSTEMATIC NAME" ACDLabs 12.01 11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide
3YJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-methyl-11-[(7~{R},8~{R},9~{S},13~{S},14~{S},17~{S})-13-methyl-3,17-bis(oxidanyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-7-yl]-~{N}-propyl-undecanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3YJ 'Create component' 2021-07-07 RCSB
3YJ 'Initial release' 2022-07-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3YJ N1 N 18.568 -8.163 1
3YJ C4 C 6.515 4.411 2
3YJ C5 C 7.918 5.236 3
3YJ C6 C 7.930 6.798 4
3YJ C7 C 9.271 4.454 5
3YJ C8 C 10.618 5.246 6
3YJ C10 C 9.295 7.558 7
3YJ C13 C 10.594 9.808 8
3YJ C15 C 13.312 7.101 9
3YJ C17 C 13.312 9.515 10
3YJ C20 C 11.943 3.011 11
3YJ C21 C 13.251 2.276 12
3YJ C22 C 13.268 0.776 13
3YJ C24 C 14.593 -1.459 14
3YJ C26 C 15.918 -3.693 15
3YJ C28 C 17.243 -5.928 16
3YJ C1 C 6.540 7.644 17
3YJ C11 C 11.893 7.558 18
3YJ C12 C 11.893 9.058 19
3YJ C14 C 9.295 9.058 20
3YJ C16 C 14.188 8.308 21
3YJ C18 C 11.893 10.558 22
3YJ C19 C 11.926 4.511 23
3YJ C2 C 5.118 6.852 24
3YJ C23 C 14.576 0.041 25
3YJ C25 C 15.901 -2.193 26
3YJ C27 C 17.226 -4.428 27
3YJ C29 C 18.551 -6.663 28
3YJ C3 C 5.106 5.225 29
3YJ C30 C 17.278 -8.928 30
3YJ C31 C 19.876 -8.898 31
3YJ C32 C 19.893 -10.398 32
3YJ C33 C 21.201 -11.133 33
3YJ C9 C 10.594 6.808 34
3YJ O1 O 3.804 4.480 35
3YJ O2 O 13.779 10.941 36
3YJ O3 O 19.841 -5.898 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3YJ C33 C32 SINGLE NONE 1
3YJ C32 C31 SINGLE NONE 2
3YJ C31 N1 SINGLE NONE 3
3YJ C30 N1 SINGLE NONE 4
3YJ N1 C29 SINGLE NONE 5
3YJ C29 C28 SINGLE NONE 6
3YJ C29 O3 DOUBLE NONE 7
3YJ C28 C27 SINGLE NONE 8
3YJ C27 C26 SINGLE NONE 9
3YJ C26 C25 SINGLE NONE 10
3YJ C25 C24 SINGLE NONE 11
3YJ C24 C23 SINGLE NONE 12
3YJ C23 C22 SINGLE NONE 13
3YJ C22 C21 SINGLE NONE 14
3YJ C21 C20 SINGLE NONE 15
3YJ C20 C19 SINGLE NONE 16
3YJ C8 C19 SINGLE BEGINDASH 17
3YJ C8 C7 SINGLE NONE 18
3YJ C8 C9 SINGLE NONE 19
3YJ O1 C3 SINGLE NONE 20
3YJ C4 C3 DOUBLE NONE 21
3YJ C4 C5 SINGLE NONE 22
3YJ C3 C2 SINGLE NONE 23
3YJ C7 C5 SINGLE NONE 24
3YJ C5 C6 DOUBLE NONE 25
3YJ C2 C1 DOUBLE NONE 26
3YJ C6 C1 SINGLE NONE 27
3YJ C6 C10 SINGLE NONE 28
3YJ C10 C9 SINGLE NONE 29
3YJ C10 C14 SINGLE NONE 30
3YJ C11 C9 SINGLE NONE 31
3YJ C11 C15 SINGLE NONE 32
3YJ C11 C12 SINGLE NONE 33
3YJ C15 C16 SINGLE NONE 34
3YJ C13 C14 SINGLE NONE 35
3YJ C13 C12 SINGLE NONE 36
3YJ C16 C17 SINGLE NONE 37
3YJ C17 C12 SINGLE NONE 38
3YJ C17 O2 SINGLE BEGINWEDGE 39
3YJ C12 C18 SINGLE BEGINWEDGE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3YJ MurckoScaffold S1 scaffold 'c1ccc2c(c1)CC[C@@H]1[C@@H]2CCC2CCC[C@H]21' InChI=1S/C17H22/c1-2-6-14-12(4-1)8-10-17-15-7-3-5-13(15)9-11-16(14)17/h1-2,4,6,13,15-17H,3,5,7-11H2/t13?,15-,16-,17+/m1/s1 GBGFUQOSVTZLFA-ZCJOQKPTSA-N
3YJ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
3YJ cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
3YJ cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
3YJ phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3YJ steroid-like F5 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3YJ C4 S1 1
3YJ C5 S1 1
3YJ C6 S1 1
3YJ C7 S1 1
3YJ C8 S1 1
3YJ C10 S1 1
3YJ C13 S1 1
3YJ C15 S1 1
3YJ C17 S1 1
3YJ C1 S1 1
3YJ C11 S1 1
3YJ C12 S1 1
3YJ C14 S1 1
3YJ C16 S1 1
3YJ C2 S1 1
3YJ C3 S1 1
3YJ C9 S1 1
3YJ N1 F1 1
3YJ C29 F1 1
3YJ O3 F1 1
3YJ C28 F1 1
3YJ C10 F2 1
3YJ C9 F2 1
3YJ C11 F2 1
3YJ C12 F2 1
3YJ C13 F2 1
3YJ C14 F2 1
3YJ C15 F3 1
3YJ C11 F3 1
3YJ C12 F3 1
3YJ C17 F3 1
3YJ C16 F3 1
3YJ C4 F4 1
3YJ C3 F4 1
3YJ C2 F4 1
3YJ C1 F4 1
3YJ C6 F4 1
3YJ C5 F4 1
3YJ C2 F5 1
3YJ C3 F5 1
3YJ C4 F5 1
3YJ C5 F5 1
3YJ C6 F5 1
3YJ C1 F5 1
3YJ C10 F5 1
3YJ C9 F5 1
3YJ C8 F5 1
3YJ C7 F5 1
3YJ C11 F5 1
3YJ C12 F5 1
3YJ C13 F5 1
3YJ C14 F5 1
3YJ C17 F5 1
3YJ C16 F5 1
3YJ C15 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3YJ
_pdbe_chem_comp_rdkit_properties.exactmw 511.403
_pdbe_chem_comp_rdkit_properties.amw 511.791
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.788
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 300.414
_pdbe_chem_comp_rdkit_properties.tpsa 60.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP 7.033
_pdbe_chem_comp_rdkit_properties.CrippenMR 150.560
_pdbe_chem_comp_rdkit_properties.chi0v 18.172
_pdbe_chem_comp_rdkit_properties.chi1v 9.783
_pdbe_chem_comp_rdkit_properties.chi2v 4.596
_pdbe_chem_comp_rdkit_properties.chi3v 4.596
_pdbe_chem_comp_rdkit_properties.chi4v 3.051
_pdbe_chem_comp_rdkit_properties.chi0n 71.172
_pdbe_chem_comp_rdkit_properties.chi1n 36.100
_pdbe_chem_comp_rdkit_properties.chi2n 4.596
_pdbe_chem_comp_rdkit_properties.chi3n 4.596
_pdbe_chem_comp_rdkit_properties.chi4n 3.051
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.550
_pdbe_chem_comp_rdkit_properties.kappa1 5.031
_pdbe_chem_comp_rdkit_properties.kappa2 13.001
_pdbe_chem_comp_rdkit_properties.kappa3 6.545
_pdbe_chem_comp_rdkit_properties.Phi 1.768
#
_pdbe_chem_comp_external_mappings.comp_id 3YJ
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 3YJ
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3YJ N1 7.786 -1.645 -0.727 ETKDGv3 1
3YJ C4 -2.448 1.090 4.173 ETKDGv3 2
3YJ C5 -2.991 0.795 2.824 ETKDGv3 3
3YJ C6 -3.092 -0.499 2.402 ETKDGv3 4
3YJ C7 -3.494 1.967 2.006 ETKDGv3 5
3YJ C8 -3.555 1.665 0.494 ETKDGv3 6
3YJ C10 -3.600 -0.853 1.003 ETKDGv3 7
3YJ C13 -4.997 -2.472 -0.458 ETKDGv3 8
3YJ C15 -5.461 0.959 -1.984 ETKDGv3 9
3YJ C17 -6.028 -1.374 -2.584 ETKDGv3 10
3YJ C20 -2.067 2.032 -1.612 ETKDGv3 11
3YJ C21 -0.649 2.386 -2.090 ETKDGv3 12
3YJ C22 0.301 1.176 -2.061 ETKDGv3 13
3YJ C24 2.481 2.585 -2.090 ETKDGv3 14
3YJ C26 3.494 1.074 -0.235 ETKDGv3 15
3YJ C28 5.616 -0.299 -0.379 ETKDGv3 16
3YJ C1 -2.518 -1.570 3.267 ETKDGv3 17
3YJ C11 -4.781 -0.059 -1.074 ETKDGv3 18
3YJ C12 -5.742 -1.264 -1.071 ETKDGv3 19
3YJ C14 -4.465 -2.148 0.964 ETKDGv3 20
3YJ C16 -6.131 0.097 -3.070 ETKDGv3 21
3YJ C18 -7.082 -1.027 -0.299 ETKDGv3 22
3YJ C19 -2.115 1.688 -0.112 ETKDGv3 23
3YJ C2 -2.007 -1.283 4.468 ETKDGv3 24
3YJ C23 1.650 1.462 -2.743 ETKDGv3 25
3YJ C25 2.783 2.392 -0.590 ETKDGv3 26
3YJ C27 4.882 0.953 -0.882 ETKDGv3 27
3YJ C29 6.981 -0.478 -1.006 ETKDGv3 28
3YJ C3 -1.983 0.106 4.954 ETKDGv3 29
3YJ C30 8.883 -1.978 -1.642 ETKDGv3 30
3YJ C31 7.526 -2.505 0.440 ETKDGv3 31
3YJ C32 8.076 -1.878 1.729 ETKDGv3 32
3YJ C33 9.602 -1.814 1.734 ETKDGv3 33
3YJ C9 -4.360 0.343 0.352 ETKDGv3 34
3YJ O1 -1.469 0.379 6.221 ETKDGv3 35
3YJ O2 -7.158 -2.157 -2.896 ETKDGv3 36
3YJ O3 7.417 0.396 -1.806 ETKDGv3 37
3YJ H1 -2.425 2.113 4.528 ETKDGv3 38
3YJ H2 -4.513 2.225 2.370 ETKDGv3 39
3YJ H3 -2.865 2.864 2.195 ETKDGv3 40
3YJ H4 -4.143 2.489 0.032 ETKDGv3 41
3YJ H5 -2.703 -1.085 0.391 ETKDGv3 42
3YJ H6 -4.136 -2.755 -1.102 ETKDGv3 43
3YJ H7 -5.673 -3.353 -0.409 ETKDGv3 44
3YJ H8 -6.220 1.543 -1.419 ETKDGv3 45
3YJ H9 -4.736 1.665 -2.436 ETKDGv3 46
3YJ H10 -5.151 -1.839 -3.088 ETKDGv3 47
3YJ H11 -2.717 2.913 -1.806 ETKDGv3 48
3YJ H12 -2.438 1.188 -2.222 ETKDGv3 49
3YJ H13 -0.721 2.764 -3.134 ETKDGv3 50
3YJ H14 -0.245 3.209 -1.462 ETKDGv3 51
3YJ H15 0.472 0.844 -1.017 ETKDGv3 52
3YJ H16 -0.178 0.329 -2.599 ETKDGv3 53
3YJ H17 3.437 2.687 -2.646 ETKDGv3 54
3YJ H18 1.953 3.554 -2.221 ETKDGv3 55
3YJ H19 3.610 1.041 0.870 ETKDGv3 56
3YJ H20 2.864 0.206 -0.522 ETKDGv3 57
3YJ H21 5.727 -0.230 0.723 ETKDGv3 58
3YJ H22 5.000 -1.192 -0.617 ETKDGv3 59
3YJ H23 -2.482 -2.596 2.931 ETKDGv3 60
3YJ H24 -3.849 -0.372 -1.599 ETKDGv3 61
3YJ H25 -3.858 -3.022 1.276 ETKDGv3 62
3YJ H26 -5.303 -2.067 1.688 ETKDGv3 63
3YJ H27 -5.602 0.213 -4.041 ETKDGv3 64
3YJ H28 -7.185 0.423 -3.204 ETKDGv3 65
3YJ H29 -7.729 -1.926 -0.378 ETKDGv3 66
3YJ H30 -7.651 -0.167 -0.708 ETKDGv3 67
3YJ H31 -6.946 -0.850 0.783 ETKDGv3 68
3YJ H32 -1.525 2.471 0.412 ETKDGv3 69
3YJ H33 -1.580 0.739 0.076 ETKDGv3 70
3YJ H34 -1.595 -2.073 5.083 ETKDGv3 71
3YJ H35 1.465 1.736 -3.804 ETKDGv3 72
3YJ H36 2.248 0.526 -2.763 ETKDGv3 73
3YJ H37 1.836 2.455 -0.012 ETKDGv3 74
3YJ H38 3.413 3.242 -0.248 ETKDGv3 75
3YJ H39 4.772 0.884 -1.986 ETKDGv3 76
3YJ H40 5.483 1.856 -0.635 ETKDGv3 77
3YJ H41 9.430 -2.888 -1.314 ETKDGv3 78
3YJ H42 8.478 -2.160 -2.660 ETKDGv3 79
3YJ H43 9.609 -1.139 -1.682 ETKDGv3 80
3YJ H44 6.436 -2.685 0.550 ETKDGv3 81
3YJ H45 7.981 -3.510 0.301 ETKDGv3 82
3YJ H46 7.744 -2.493 2.593 ETKDGv3 83
3YJ H47 7.669 -0.854 1.866 ETKDGv3 84
3YJ H48 10.033 -2.825 1.576 ETKDGv3 85
3YJ H49 9.964 -1.130 0.938 ETKDGv3 86
3YJ H50 9.953 -1.427 2.713 ETKDGv3 87
3YJ H51 -5.291 0.513 0.930 ETKDGv3 88
3YJ H52 -1.433 1.322 6.590 ETKDGv3 89
3YJ H53 -7.975 -1.616 -2.747 ETKDGv3 90
#