data_40I
#
_chem_comp.id 40I
_chem_comp.name
N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S}-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]furan-2-carboxamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H36 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-01
_chem_comp.pdbx_modified_date 2022-12-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 476.566
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 40I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7WO2
_chem_comp.pdbx_subcomponent_list "FOA VAL LEU ELF"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
40I C26 C9 C 0 1 N N N N N N 20.321 16.902 31.038 5.307 -0.302 -0.529 C1 FOA 1
40I C27 C22 C 0 1 Y N N N N N 19.507 17.782 31.991 6.460 -0.261 0.376 C2 FOA 2
40I C28 C10 C 0 1 Y N N N N N 20.032 18.596 33.007 7.765 -0.097 0.007 C3 FOA 3
40I C29 C23 C 0 1 Y N N N N N 18.952 19.199 33.651 8.524 -0.118 1.187 C4 FOA 4
40I C30 C24 C 0 1 Y N N N N N 17.796 18.733 33.026 7.661 -0.291 2.212 C5 FOA 5
40I O32 O4 O 0 1 N N N N N N 21.469 17.095 30.805 5.471 -0.190 -1.730 O6 FOA 6
40I O31 O3 O 0 1 Y N N N N N 18.159 17.877 32.037 6.418 -0.372 1.720 O8 FOA 7
40I N25 N4 N 0 1 N N N N N N 19.654 15.750 30.435 4.066 -0.470 -0.032 N VAL 8
40I C21 C6 C 0 1 N N S N N N 20.410 14.879 29.576 2.914 -0.511 -0.936 CA VAL 9
40I C20 C5 C 0 1 N N N N N N 19.648 14.763 28.252 1.673 -0.094 -0.189 C VAL 10
40I O33 O5 O 0 1 N N N N N N 18.538 14.349 28.235 1.660 -0.115 1.024 O VAL 11
40I C22 C7 C 0 1 N N N N N N 20.413 13.520 30.239 2.734 -1.934 -1.468 CB VAL 12
40I C24 C8 C 0 1 N N N N N N 21.180 12.508 29.399 3.929 -2.304 -2.349 CG1 VAL 13
40I C23 C21 C 0 1 N N N N N N 20.917 13.643 31.676 2.644 -2.910 -0.294 CG2 VAL 14
40I N19 N3 N 0 1 N N N N N N 20.316 15.189 27.018 0.579 0.303 -0.868 N LEU 15
40I C14 C18 C 0 1 N N S N N N 19.583 15.099 25.752 -0.586 0.817 -0.144 CA LEU 16
40I C13 C2 C 0 1 N N N N N N 19.570 13.654 25.290 -1.825 0.614 -0.977 C LEU 17
40I O34 O6 O 0 1 N N N N N N 20.562 13.007 25.281 -1.743 0.091 -2.068 O LEU 18
40I C15 C3 C 0 1 N N N N N N 20.324 15.922 24.690 -0.396 2.310 0.133 CB LEU 19
40I C16 C19 C 0 1 N N N N N N 20.044 17.459 24.688 0.789 2.507 1.081 CG LEU 20
40I C17 C4 C 0 1 N N N N N N 21.087 18.201 23.803 1.056 4.003 1.259 CD1 LEU 21
40I C18 C20 C 0 1 N N N N N N 20.007 18.093 26.088 0.464 1.881 2.439 CD2 LEU 22
40I C07 C16 C 0 1 N N N N N N 19.104 9.101 27.414 -5.473 -3.014 0.503 C6 ELF 23
40I C03 C12 C 0 1 N N S N N N 18.261 11.690 24.384 -4.229 0.816 -1.319 C11 ELF 24
40I C06 C15 C 0 1 N N N N N N 18.962 10.497 27.056 -5.328 -1.785 -0.402 C13 ELF 25
40I C10 C1 C 0 1 N N N N N N 16.469 10.143 27.580 -6.464 -0.582 1.449 C15 ELF 26
40I C04 C13 C 0 1 N N N N N N 17.291 10.871 25.264 -5.449 0.710 -0.401 C17 ELF 27
40I C02 C11 C 0 1 N N N N N N 17.712 11.703 22.948 -4.404 1.986 -2.253 C24 ELF 28
40I C05 C14 C 0 1 N N S N N N 17.615 10.927 26.826 -5.318 -0.534 0.480 C25 ELF 29
40I C08 C17 C 0 1 N N N N N N 18.339 8.710 28.617 -6.865 -2.995 1.135 C27 ELF 30
40I N12 N1 N 0 1 N N N N N N 18.306 13.067 24.849 -3.025 1.014 -0.509 N3 ELF 31
40I N09 N2 N 0 1 N N N N N N 16.849 8.989 28.502 -7.131 -1.698 1.744 N4 ELF 32
40I O01 O1 O 0 1 N N N N N N 17.738 10.671 22.346 -3.604 2.891 -2.243 O3 ELF 33
40I O11 O2 O 0 1 N N N N N N 15.339 10.462 27.440 -6.801 0.449 1.991 O4 ELF 34
40I H12 H12 H 0 1 N N N N N N 21.077 18.730 33.245 8.139 0.024 -0.999 H3 FOA 35
40I H32 H32 H 0 1 N N N N N N 19.002 19.894 34.476 9.596 -0.015 1.262 H4 FOA 36
40I H33 H33 H 0 1 N N N N N N 16.784 19.007 33.285 7.928 -0.352 3.257 H5 FOA 37
40I H36 H36 H 0 1 N N N N N N 18.687 15.570 30.617 3.935 -0.563 0.925 H VAL 38
40I H7 H7 H 0 1 N N N N N N 21.435 15.242 29.409 3.082 0.170 -1.770 HA VAL 39
40I H8 H8 H 0 1 N N N N N N 19.369 13.177 30.289 1.818 -1.989 -2.057 HB VAL 40
40I H9 H9 H 0 1 N N N N N N 21.168 11.529 29.901 4.828 -2.365 -1.735 HG11 VAL 41
40I H10 H10 H 0 1 N N N N N N 20.706 12.418 28.410 3.747 -3.269 -2.822 HG12 VAL 42
40I H11 H11 H 0 1 N N N N N N 22.220 12.845 29.278 4.064 -1.543 -3.116 HG13 VAL 43
40I H29 H29 H 0 1 N N N N N N 20.314 14.390 32.214 1.793 -2.647 0.334 HG21 VAL 44
40I H30 H30 H 0 1 N N N N N N 20.829 12.669 32.180 2.516 -3.924 -0.673 HG22 VAL 45
40I H31 H31 H 0 1 N N N N N N 21.971 13.958 31.669 3.560 -2.856 0.295 HG23 VAL 46
40I H35 H35 H 0 1 N N N N N N 21.254 15.534 27.040 0.563 0.248 -1.836 H2 LEU 47
40I H24 H24 H 0 1 N N N N N N 18.554 15.471 25.866 -0.692 0.283 0.801 HA LEU 48
40I H2 H2 H 0 1 N N N N N N 20.041 15.528 23.703 -0.203 2.832 -0.804 HB2 LEU 49
40I H3 H3 H 0 1 N N N N N N 21.403 15.778 24.847 -1.300 2.712 0.592 HB3 LEU 50
40I H25 H25 H 0 1 N N N N N N 19.056 17.611 24.228 1.673 2.027 0.661 HG LEU 51
40I H4 H4 H 0 1 N N N N N N 20.875 19.280 23.813 0.172 4.483 1.678 HD11 LEU 52
40I H5 H5 H 0 1 N N N N N N 22.097 18.022 24.199 1.901 4.143 1.934 HD12 LEU 53
40I H6 H6 H 0 1 N N N N N N 21.026 17.825 22.771 1.287 4.448 0.291 HD13 LEU 54
40I H26 H26 H 0 1 N N N N N N 19.269 17.566 26.710 1.309 2.022 3.114 HD21 LEU 55
40I H27 H27 H 0 1 N N N N N N 21.001 18.014 26.552 -0.420 2.361 2.858 HD22 LEU 56
40I H28 H28 H 0 1 N N N N N N 19.725 19.153 26.003 0.274 0.816 2.312 HD23 LEU 57
40I H20 H20 H 0 1 N N N N N N 18.756 8.490 26.568 -5.353 -3.921 -0.090 H1 ELF 58
40I H21 H21 H 0 1 N N N N N N 20.169 8.898 27.600 -4.715 -2.986 1.286 H2 ELF 59
40I H14 H14 H 0 1 N N N N N N 19.261 11.231 24.401 -4.130 -0.101 -1.899 H3 ELF 60
40I H18 H18 H 0 1 N N N N N N 19.539 10.674 26.136 -4.393 -1.848 -0.960 H4 ELF 61
40I H19 H19 H 0 1 N N N N N N 19.379 11.103 27.873 -6.167 -1.739 -1.096 H5 ELF 62
40I H15 H15 H 0 1 N N N N N N 16.274 11.260 25.109 -5.508 1.597 0.229 H6 ELF 63
40I H16 H16 H 0 1 N N N N N N 17.336 9.821 24.940 -6.353 0.633 -1.006 H7 ELF 64
40I H13 H13 H 0 1 N N N N N N 17.320 12.605 22.503 -5.244 2.014 -2.931 H8 ELF 65
40I H17 H17 H 0 1 N N N N N N 17.528 11.982 27.127 -4.379 -0.488 1.033 H9 ELF 66
40I H22 H22 H 0 1 N N N N N N 18.480 7.632 28.785 -7.613 -3.193 0.367 H10 ELF 67
40I H23 H23 H 0 1 N N N N N N 18.733 9.270 29.478 -6.924 -3.769 1.901 H11 ELF 68
40I H1 H1 H 0 1 N N N N N N 17.469 13.614 24.867 -3.090 1.432 0.364 H12 ELF 69
40I H34 H34 H 0 1 N N N N N N 16.165 8.453 28.997 -7.838 -1.644 2.407 H15 ELF 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
40I O01 C02 DOUB N N 1
40I C02 C03 SING N N 2
40I C17 C16 SING N N 3
40I C03 N12 SING N N 4
40I C03 C04 SING N N 5
40I C16 C15 SING N N 6
40I C16 C18 SING N N 7
40I C15 C14 SING N N 8
40I N12 C13 SING N N 9
40I C04 C05 SING N N 10
40I O34 C13 DOUB N N 11
40I C13 C14 SING N N 12
40I C14 N19 SING N N 13
40I C05 C06 SING N N 14
40I C05 C10 SING N N 15
40I N19 C20 SING N N 16
40I C06 C07 SING N N 17
40I C07 C08 SING N N 18
40I O11 C10 DOUB N N 19
40I C10 N09 SING N N 20
40I O33 C20 DOUB N N 21
40I C20 C21 SING N N 22
40I N09 C08 SING N N 23
40I C24 C22 SING N N 24
40I C21 C22 SING N N 25
40I C21 N25 SING N N 26
40I C22 C23 SING N N 27
40I N25 C26 SING N N 28
40I O32 C26 DOUB N N 29
40I C26 C27 SING N N 30
40I C27 O31 SING Y N 31
40I C27 C28 DOUB Y N 32
40I O31 C30 SING Y N 33
40I C28 C29 SING Y N 34
40I C30 C29 DOUB Y N 35
40I N12 H1 SING N N 36
40I C15 H2 SING N N 37
40I C15 H3 SING N N 38
40I C17 H4 SING N N 39
40I C17 H5 SING N N 40
40I C17 H6 SING N N 41
40I C21 H7 SING N N 42
40I C22 H8 SING N N 43
40I C24 H9 SING N N 44
40I C24 H10 SING N N 45
40I C24 H11 SING N N 46
40I C28 H12 SING N N 47
40I C02 H13 SING N N 48
40I C03 H14 SING N N 49
40I C04 H15 SING N N 50
40I C04 H16 SING N N 51
40I C05 H17 SING N N 52
40I C06 H18 SING N N 53
40I C06 H19 SING N N 54
40I C07 H20 SING N N 55
40I C07 H21 SING N N 56
40I C08 H22 SING N N 57
40I C08 H23 SING N N 58
40I C14 H24 SING N N 59
40I C16 H25 SING N N 60
40I C18 H26 SING N N 61
40I C18 H27 SING N N 62
40I C18 H28 SING N N 63
40I C23 H29 SING N N 64
40I C23 H30 SING N N 65
40I C23 H31 SING N N 66
40I C29 H32 SING N N 67
40I C30 H33 SING N N 68
40I N09 H34 SING N N 69
40I N19 H35 SING N N 70
40I N25 H36 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
40I InChI InChI 1.03 InChI=1S/C24H36N4O6/c1-14(2)11-18(22(31)26-17(13-29)12-16-7-5-9-25-21(16)30)27-24(33)20(15(3)4)28-23(32)19-8-6-10-34-19/h6,8,10,13-18,20H,5,7,9,11-12H2,1-4H3,(H,25,30)(H,26,31)(H,27,33)(H,28,32)/t16-,17-,18-,20-/m0/s1
40I InChIKey InChI 1.03 BLZXYDNCPITFHC-JPLJXNOCSA-N
40I SMILES_CANONICAL CACTVS 3.385 CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1occc1)C(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O
40I SMILES CACTVS 3.385 CC(C)C[CH](NC(=O)[CH](NC(=O)c1occc1)C(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O
40I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2ccco2
40I SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2ccco2
#
_pdbx_chem_comp_identifier.comp_id 40I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]furan-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
40I 'Create component' 2022-02-01 PDBJ
40I 'Modify component comp_id' 2022-02-02 PDBJ
40I 'Initial release' 2022-12-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
40I C26 C 9.495 5.938 1
40I C27 C 10.794 6.688 2
40I C28 C 10.951 8.180 3
40I C29 C 12.418 8.492 4
40I C30 C 13.168 7.193 5
40I O32 O 8.196 6.688 6
40I O31 O 12.165 6.078 7
40I N25 N 9.495 4.438 8
40I C21 C 8.196 3.688 9
40I C20 C 8.196 2.188 10
40I O33 O 9.495 1.438 11
40I C22 C 6.897 4.438 12
40I C24 C 6.897 5.938 13
40I C23 C 5.598 3.688 14
40I N19 N 6.897 1.438 15
40I C14 C 6.897 -0.062 16
40I C13 C 8.196 -0.812 17
40I O34 O 9.495 -0.062 18
40I C15 C 5.598 -0.812 19
40I C16 C 4.299 -0.062 20
40I C17 C 3.000 -0.812 21
40I C18 C 4.299 1.438 22
40I C07 C 13.392 -5.312 23
40I C03 C 9.495 -3.062 24
40I C06 C 12.093 -4.562 25
40I C10 C 10.794 -6.812 26
40I C04 C 9.495 -4.562 27
40I C02 C 10.794 -2.312 28
40I C05 C 10.794 -5.312 29
40I C08 C 13.392 -6.812 30
40I N12 N 8.196 -2.312 31
40I N09 N 12.093 -7.562 32
40I O01 O 10.794 -0.812 33
40I O11 O 9.495 -7.562 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
40I O01 C02 DOUBLE NONE 1
40I C02 C03 SINGLE NONE 2
40I C17 C16 SINGLE NONE 3
40I C03 N12 SINGLE NONE 4
40I C03 C04 SINGLE BEGINDASH 5
40I C16 C15 SINGLE NONE 6
40I C16 C18 SINGLE NONE 7
40I C14 C15 SINGLE BEGINDASH 8
40I N12 C13 SINGLE NONE 9
40I C05 C04 SINGLE BEGINDASH 10
40I O34 C13 DOUBLE NONE 11
40I C13 C14 SINGLE NONE 12
40I C14 N19 SINGLE NONE 13
40I C05 C06 SINGLE NONE 14
40I C05 C10 SINGLE NONE 15
40I N19 C20 SINGLE NONE 16
40I C06 C07 SINGLE NONE 17
40I C07 C08 SINGLE NONE 18
40I O11 C10 DOUBLE NONE 19
40I C10 N09 SINGLE NONE 20
40I O33 C20 DOUBLE NONE 21
40I C20 C21 SINGLE NONE 22
40I N09 C08 SINGLE NONE 23
40I C24 C22 SINGLE NONE 24
40I C21 C22 SINGLE NONE 25
40I C21 N25 SINGLE BEGINDASH 26
40I C22 C23 SINGLE NONE 27
40I N25 C26 SINGLE NONE 28
40I O32 C26 DOUBLE NONE 29
40I C26 C27 SINGLE NONE 30
40I C27 O31 SINGLE NONE 31
40I C27 C28 DOUBLE NONE 32
40I O31 C30 SINGLE NONE 33
40I C28 C29 SINGLE NONE 34
40I C30 C29 DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
40I MurckoScaffold S1 scaffold 'O=C(CNC(=O)CNC(=O)c1ccco1)NCC[C@@H]1CCCNC1=O' InChI=1S/C16H22N4O5/c21-13(17-7-5-11-3-1-6-18-15(11)23)9-19-14(22)10-20-16(24)12-4-2-8-25-12/h2,4,8,11H,1,3,5-7,9-10H2,(H,17,21)(H,18,23)(H,19,22)(H,20,24)/t11-/m0/s1 ANUVARFJONXXKY-NSHDSACASA-N
40I amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
40I furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
40I peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
40I C26 S1 1
40I C27 S1 1
40I C28 S1 1
40I C29 S1 1
40I C30 S1 1
40I O32 S1 1
40I O31 S1 1
40I N25 S1 1
40I C21 S1 1
40I C20 S1 1
40I O33 S1 1
40I N19 S1 1
40I C14 S1 1
40I C13 S1 1
40I O34 S1 1
40I C07 S1 1
40I C03 S1 1
40I C06 S1 1
40I C10 S1 1
40I C04 S1 1
40I C05 S1 1
40I C08 S1 1
40I N12 S1 1
40I N09 S1 1
40I O11 S1 1
40I N25 F1 1
40I C26 F1 1
40I O32 F1 1
40I C27 F1 1
40I N19 F1 2
40I C20 F1 2
40I O33 F1 2
40I C21 F1 2
40I N12 F1 3
40I C13 F1 3
40I O34 F1 3
40I C14 F1 3
40I N09 F1 4
40I C10 F1 4
40I O11 F1 4
40I C05 F1 4
40I C27 F2 1
40I C28 F2 1
40I C29 F2 1
40I C30 F2 1
40I O31 F2 1
40I O33 F3 1
40I C20 F3 1
40I C21 F3 1
40I N25 F3 1
40I O34 F3 2
40I C13 F3 2
40I C14 F3 2
40I N19 F3 2
40I O01 F3 3
40I C02 F3 3
40I C03 F3 3
40I N12 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 40I
_pdbe_chem_comp_rdkit_properties.exactmw 476.263
_pdbe_chem_comp_rdkit_properties.amw 476.574
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 250.337
_pdbe_chem_comp_rdkit_properties.tpsa 146.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.110
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.265
_pdbe_chem_comp_rdkit_properties.chi0v 16.238
_pdbe_chem_comp_rdkit_properties.chi1v 8.218
_pdbe_chem_comp_rdkit_properties.chi2v 3.055
_pdbe_chem_comp_rdkit_properties.chi3v 3.055
_pdbe_chem_comp_rdkit_properties.chi4v 1.759
_pdbe_chem_comp_rdkit_properties.chi0n 52.238
_pdbe_chem_comp_rdkit_properties.chi1n 26.007
_pdbe_chem_comp_rdkit_properties.chi2n 3.055
_pdbe_chem_comp_rdkit_properties.chi3n 3.055
_pdbe_chem_comp_rdkit_properties.chi4n 1.759
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.170
_pdbe_chem_comp_rdkit_properties.kappa1 5.963
_pdbe_chem_comp_rdkit_properties.kappa2 12.906
_pdbe_chem_comp_rdkit_properties.kappa3 8.000
_pdbe_chem_comp_rdkit_properties.Phi 2.263
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
40I UniChem ChEMBL CHEMBL5175884
40I UniChem PDBe 40I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
40I C26 -0.214 0.368 2.684 ETKDGv3 1
40I C27 -0.763 1.565 2.029 ETKDGv3 2
40I C28 -2.033 1.767 1.699 ETKDGv3 3
40I C29 -2.086 3.057 1.020 ETKDGv3 4
40I C30 -0.851 3.533 0.997 ETKDGv3 5
40I O32 1.035 0.238 2.780 ETKDGv3 6
40I O31 0.011 2.642 1.619 ETKDGv3 7
40I N25 -1.080 -0.664 3.177 ETKDGv3 8
40I C21 -0.692 -2.080 3.138 ETKDGv3 9
40I C20 -0.469 -2.525 1.708 ETKDGv3 10
40I O33 0.387 -3.419 1.465 ETKDGv3 11
40I C22 -1.740 -2.966 3.872 ETKDGv3 12
40I C24 -1.186 -4.369 4.162 ETKDGv3 13
40I C23 -3.081 -3.074 3.122 ETKDGv3 14
40I N19 -1.237 -1.951 0.636 ETKDGv3 15
40I C14 -1.057 -2.330 -0.772 ETKDGv3 16
40I C13 0.352 -2.076 -1.259 ETKDGv3 17
40I O34 0.773 -2.730 -2.252 ETKDGv3 18
40I C15 -2.100 -1.625 -1.669 ETKDGv3 19
40I C16 -1.965 -0.074 -1.704 ETKDGv3 20
40I C17 -1.267 0.397 -2.986 ETKDGv3 21
40I C18 -3.339 0.599 -1.586 ETKDGv3 22
40I C07 3.130 3.215 -3.266 ETKDGv3 23
40I C03 2.589 -0.875 -1.045 ETKDGv3 24
40I C06 1.817 2.585 -2.785 ETKDGv3 25
40I C10 2.844 2.347 -0.528 ETKDGv3 26
40I C04 2.708 0.311 -2.032 ETKDGv3 27
40I C02 3.476 -0.728 0.162 ETKDGv3 28
40I C05 2.033 1.640 -1.584 ETKDGv3 29
40I C08 3.775 4.044 -2.152 ETKDGv3 30
40I N12 1.196 -1.091 -0.639 ETKDGv3 31
40I N09 3.854 3.294 -0.899 ETKDGv3 32
40I O01 3.364 -1.495 1.105 ETKDGv3 33
40I O11 2.660 2.082 0.689 ETKDGv3 34
40I H12 -2.862 1.091 1.862 ETKDGv3 35
40I H32 -2.960 3.536 0.601 ETKDGv3 36
40I H33 -0.550 4.474 0.557 ETKDGv3 37
40I H36 -2.033 -0.393 3.508 ETKDGv3 38
40I H7 0.272 -2.175 3.685 ETKDGv3 39
40I H8 -1.947 -2.493 4.858 ETKDGv3 40
40I H9 -0.234 -4.299 4.730 ETKDGv3 41
40I H10 -1.910 -4.944 4.778 ETKDGv3 42
40I H11 -1.004 -4.927 3.220 ETKDGv3 43
40I H29 -3.498 -2.070 2.903 ETKDGv3 44
40I H30 -2.959 -3.628 2.167 ETKDGv3 45
40I H31 -3.820 -3.618 3.747 ETKDGv3 46
40I H35 -2.009 -1.292 0.883 ETKDGv3 47
40I H24 -1.245 -3.424 -0.850 ETKDGv3 48
40I H2 -2.039 -2.046 -2.698 ETKDGv3 49
40I H3 -3.105 -1.917 -1.291 ETKDGv3 50
40I H25 -1.358 0.279 -0.843 ETKDGv3 51
40I H4 -1.128 1.499 -2.963 ETKDGv3 52
40I H5 -0.268 -0.074 -3.081 ETKDGv3 53
40I H6 -1.870 0.132 -3.882 ETKDGv3 54
40I H26 -3.818 0.320 -0.623 ETKDGv3 55
40I H27 -4.001 0.287 -2.422 ETKDGv3 56
40I H28 -3.230 1.704 -1.605 ETKDGv3 57
40I H20 2.922 3.875 -4.136 ETKDGv3 58
40I H21 3.835 2.426 -3.605 ETKDGv3 59
40I H14 2.961 -1.780 -1.574 ETKDGv3 60
40I H18 1.114 3.396 -2.489 ETKDGv3 61
40I H19 1.341 2.039 -3.628 ETKDGv3 62
40I H15 2.242 -0.022 -2.984 ETKDGv3 63
40I H16 3.783 0.487 -2.258 ETKDGv3 64
40I H13 4.250 0.032 0.191 ETKDGv3 65
40I H17 1.025 1.424 -1.173 ETKDGv3 66
40I H22 4.797 4.346 -2.465 ETKDGv3 67
40I H23 3.178 4.966 -1.982 ETKDGv3 68
40I H1 0.798 -0.479 0.108 ETKDGv3 69
40I H34 4.489 3.657 -0.154 ETKDGv3 70
#