data_40P
#
_chem_comp.id 40P
_chem_comp.name "Pinnatoxin A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C41 H61 N O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-01-06
_chem_comp.pdbx_modified_date 2015-05-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 711.924
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 40P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4XHE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
40P C13 C1 C 0 1 N N N N N N 1.744 -3.087 51.247 1.744 -3.087 51.247 C13 40P 1
40P C18 C2 C 0 1 N N N N N N -3.067 0.337 52.430 -3.067 0.337 52.430 C18 40P 2
40P C15 C3 C 0 1 N N S N N N -0.331 -1.868 51.848 -0.331 -1.868 51.848 C15 40P 3
40P C17 C4 C 0 1 N N R N N N -1.800 -0.087 51.708 -1.800 -0.087 51.708 C17 40P 4
40P O1 O1 O 0 1 N N N N N N 4.501 -3.229 51.685 4.501 -3.229 51.685 O1 40P 5
40P O3 O2 O 0 1 N N N N N N 4.442 -5.374 51.374 4.442 -5.374 51.374 O3 40P 6
40P C2 C5 C 0 1 N N N N N N 3.872 -4.274 51.419 3.872 -4.274 51.419 C2 40P 7
40P C8 C6 C 0 1 N N N N N N 2.427 -4.242 51.130 2.427 -4.242 51.130 C8 40P 8
40P C9 C7 C 0 1 N N N N N N 1.798 -5.536 50.695 1.798 -5.536 50.695 C9 40P 9
40P C10 C8 C 0 1 N N N N N N 0.342 -5.371 50.253 0.342 -5.371 50.253 C10 40P 10
40P C27 C9 C 0 1 N N R N N N -0.434 -4.348 51.069 -0.434 -4.348 51.069 C27 40P 11
40P C28 C10 C 0 1 N N N N N N -0.449 -4.825 52.544 -0.449 -4.825 52.544 C28 40P 12
40P C46 C11 C 0 1 N N S N N N -1.773 -4.590 53.298 -1.773 -4.590 53.298 C46 40P 13
40P C22 C12 C 0 1 N N N N N N -1.544 -4.450 54.812 -1.544 -4.450 54.812 C22 40P 14
40P C29 C13 C 0 1 N N R N N N -2.760 -5.713 53.058 -2.760 -5.713 53.058 C29 40P 15
40P C6 C14 C 0 1 N N N N N N -4.198 -5.228 53.253 -4.198 -5.228 53.253 C6 40P 16
40P C30 C15 C 0 1 N N N N N N -2.588 -6.375 51.697 -2.588 -6.375 51.697 C30 40P 17
40P N31 N1 N 0 1 N N N N N N -2.646 -5.318 50.665 -2.646 -5.318 50.665 N31 40P 18
40P C32 C16 C 0 1 N N N N N N -1.812 -4.407 50.378 -1.812 -4.407 50.378 C32 40P 19
40P C33 C17 C 0 1 N N N N N N -2.161 -3.464 49.234 -2.161 -3.464 49.234 C33 40P 20
40P C34 C18 C 0 1 N N N N N N -3.642 -3.412 48.869 -3.642 -3.412 48.869 C34 40P 21
40P C35 C19 C 0 1 N N N N N N -4.450 -2.774 49.983 -4.450 -2.774 49.983 C35 40P 22
40P C36 C20 C 0 1 N N N N N N -5.876 -2.413 49.602 -5.876 -2.413 49.602 C36 40P 23
40P C38 C21 C 0 1 N N N N N N -6.455 -2.897 48.511 -6.455 -2.897 48.511 C38 40P 24
40P C37 C22 C 0 1 N N N N N N -6.650 -1.488 50.517 -6.650 -1.488 50.517 C37 40P 25
40P C48 C23 C 0 1 N N S N N N -6.730 -1.966 51.983 -6.730 -1.966 51.983 C48 40P 26
40P C49 C24 C 0 1 N N N N N N -7.389 -3.326 52.154 -7.389 -3.326 52.154 C49 40P 27
40P C50 C25 C 0 1 N N N N N N -7.634 -3.655 53.631 -7.634 -3.655 53.631 C50 40P 28
40P C51 C26 C 0 1 N N R N N N -8.236 -2.466 54.384 -8.236 -2.466 54.384 C51 40P 29
40P O52 O3 O 0 1 N N N N N N -8.276 -2.764 55.780 -8.276 -2.764 55.780 O52 40P 30
40P C53 C27 C 0 1 N N N N N N -9.649 -2.163 53.860 -9.649 -2.163 53.860 C53 40P 31
40P O47 O4 O 0 1 N N N N N N -7.340 -0.956 52.776 -7.340 -0.956 52.776 O47 40P 32
40P C43 C28 C 0 1 N N R N N N -7.356 -1.267 54.179 -7.356 -1.267 54.179 C43 40P 33
40P O44 O5 O 0 1 N N N N N N -6.002 -1.489 54.638 -6.002 -1.489 54.638 O44 40P 34
40P C42 C29 C 0 1 N N N N N N -7.877 -0.009 54.884 -7.877 -0.009 54.884 C42 40P 35
40P C55 C30 C 0 1 N N N N N N -6.627 0.721 55.301 -6.627 0.721 55.301 C55 40P 36
40P C23 C31 C 0 1 N N R N N N -5.457 -0.218 55.049 -5.457 -0.218 55.049 C23 40P 37
40P O48 O6 O 0 1 N N N N N N -4.624 0.289 54.010 -4.624 0.289 54.010 O48 40P 38
40P C80 C32 C 0 1 N N N N N N -4.759 -0.387 56.366 -4.759 -0.387 56.366 C80 40P 39
40P C60 C33 C 0 1 N N N N N N -3.520 -1.241 56.026 -3.520 -1.241 56.026 C60 40P 40
40P C81 C34 C 0 1 N N N N N N -2.688 -0.675 54.848 -2.688 -0.675 54.848 C81 40P 41
40P C21 C35 C 0 1 N N R N N N -3.528 -0.546 53.596 -3.528 -0.546 53.596 C21 40P 42
40P O16 O7 O 0 1 N N N N N N -1.682 -1.503 51.507 -1.682 -1.503 51.507 O16 40P 43
40P O65 O8 O 0 1 N N N N N N -0.662 0.290 52.452 -0.662 0.290 52.452 O65 40P 44
40P C61 C36 C 0 1 N N R N N N 0.379 -0.517 51.914 0.379 -0.517 51.914 C61 40P 45
40P C62 C37 C 0 1 N N R N N N 0.781 0.103 50.567 0.781 0.103 50.567 C62 40P 46
40P O66 O9 O 0 1 N N N N N N 1.354 1.390 50.808 1.354 1.390 50.808 O66 40P 47
40P C63 C38 C 0 1 N N R N N N -0.426 0.263 49.627 -0.426 0.263 49.627 C63 40P 48
40P C67 C39 C 0 1 N N N N N N -0.173 1.260 48.492 -0.173 1.260 48.492 C67 40P 49
40P C64 C40 C 0 1 N N N N N N -1.676 0.665 50.382 -1.676 0.665 50.382 C64 40P 50
40P C12 C41 C 0 1 N N S N N N 0.258 -2.960 50.934 0.258 -2.960 50.934 C12 40P 51
40P H1 H1 H 0 1 N N N N N N 2.276 -2.208 51.579 2.276 -2.207 51.579 H1 40P 52
40P H2 H2 H 0 1 N N N N N N -2.901 1.350 52.825 -2.901 1.350 52.825 H2 40P 53
40P H3 H3 H 0 1 N N N N N N -3.880 0.361 51.689 -3.880 0.361 51.689 H3 40P 54
40P H4 H4 H 0 1 N N N N N N -0.337 -2.277 52.869 -0.337 -2.277 52.869 H4 40P 55
40P H5 H5 H 0 1 N N N N N N 5.416 -3.438 51.830 5.416 -3.438 51.830 H5 40P 56
40P H6 H6 H 0 1 N N N N N N 1.831 -6.243 51.537 1.831 -6.243 51.537 H6 40P 57
40P H7 H7 H 0 1 N N N N N N 2.377 -5.942 49.852 2.377 -5.942 49.852 H7 40P 58
40P H8 H8 H 0 1 N N N N N N 0.333 -5.054 49.200 0.333 -5.054 49.200 H8 40P 59
40P H9 H9 H 0 1 N N N N N N -0.162 -6.344 50.347 -0.162 -6.344 50.347 H9 40P 60
40P H10 H10 H 0 1 N N N N N N -0.239 -5.905 52.554 -0.239 -5.905 52.554 H10 40P 61
40P H11 H11 H 0 1 N N N N N N 0.348 -4.291 53.082 0.348 -4.291 53.082 H11 40P 62
40P H12 H12 H 0 1 N N N N N N -2.215 -3.653 52.930 -2.215 -3.653 52.930 H12 40P 63
40P H13 H13 H 0 1 N N N N N N -2.508 -4.284 55.315 -2.508 -4.284 55.315 H13 40P 64
40P H14 H14 H 0 1 N N N N N N -1.082 -5.370 55.199 -1.082 -5.370 55.199 H14 40P 65
40P H15 H15 H 0 1 N N N N N N -0.878 -3.596 55.005 -0.878 -3.596 55.005 H15 40P 66
40P H16 H16 H 0 1 N N N N N N -2.572 -6.483 53.821 -2.572 -6.483 53.821 H16 40P 67
40P H17 H17 H 0 1 N N N N N N -4.295 -4.755 54.241 -4.295 -4.755 54.241 H17 40P 68
40P H18 H18 H 0 1 N N N N N N -4.447 -4.496 52.470 -4.447 -4.496 52.470 H18 40P 69
40P H19 H19 H 0 1 N N N N N N -4.886 -6.084 53.187 -4.886 -6.084 53.187 H19 40P 70
40P H20 H20 H 0 1 N N N N N N -3.395 -7.103 51.531 -3.395 -7.103 51.531 H20 40P 71
40P H21 H21 H 0 1 N N N N N N -1.616 -6.888 51.652 -1.616 -6.888 51.652 H21 40P 72
40P H22 H22 H 0 1 N N N N N N -1.601 -3.786 48.344 -1.601 -3.786 48.343 H22 40P 73
40P H23 H23 H 0 1 N N N N N N -1.844 -2.450 49.519 -1.844 -2.450 49.519 H23 40P 74
40P H24 H24 H 0 1 N N N N N N -3.766 -2.821 47.950 -3.766 -2.821 47.950 H24 40P 75
40P H25 H25 H 0 1 N N N N N N -4.008 -4.435 48.699 -4.008 -4.436 48.699 H25 40P 76
40P H26 H26 H 0 1 N N N N N N -4.488 -3.479 50.827 -4.488 -3.479 50.827 H26 40P 77
40P H27 H27 H 0 1 N N N N N N -3.935 -1.854 50.297 -3.935 -1.854 50.297 H27 40P 78
40P H28 H28 H 0 1 N N N N N N -7.475 -2.631 48.278 -7.475 -2.631 48.278 H28 40P 79
40P H29 H29 H 0 1 N N N N N N -5.906 -3.557 47.856 -5.906 -3.557 47.856 H29 40P 80
40P H30 H30 H 0 1 N N N N N N -6.163 -0.502 50.502 -6.163 -0.502 50.502 H30 40P 81
40P H31 H31 H 0 1 N N N N N N -7.675 -1.397 50.128 -7.675 -1.397 50.128 H31 40P 82
40P H32 H32 H 0 1 N N N N N N -5.691 -2.078 52.327 -5.691 -2.078 52.327 H32 40P 83
40P H33 H33 H 0 1 N N N N N N -8.353 -3.324 51.624 -8.353 -3.324 51.624 H33 40P 84
40P H34 H34 H 0 1 N N N N N N -6.734 -4.097 51.721 -6.734 -4.096 51.721 H34 40P 85
40P H35 H35 H 0 1 N N N N N N -8.328 -4.506 53.696 -8.328 -4.506 53.696 H35 40P 86
40P H36 H36 H 0 1 N N N N N N -6.676 -3.926 54.099 -6.676 -3.926 54.099 H36 40P 87
40P H37 H37 H 0 1 N N N N N N -8.649 -2.028 56.251 -8.649 -2.028 56.251 H37 40P 88
40P H38 H38 H 0 1 N N N N N N -10.069 -1.307 54.409 -10.069 -1.308 54.409 H38 40P 89
40P H39 H39 H 0 1 N N N N N N -9.598 -1.921 52.788 -9.598 -1.921 52.788 H39 40P 90
40P H40 H40 H 0 1 N N N N N N -10.291 -3.044 54.007 -10.291 -3.044 54.007 H40 40P 91
40P H41 H41 H 0 1 N N N N N N -8.477 0.605 54.196 -8.477 0.605 54.196 H41 40P 92
40P H42 H42 H 0 1 N N N N N N -8.485 -0.276 55.761 -8.485 -0.276 55.761 H42 40P 93
40P H43 H43 H 0 1 N N N N N N -6.509 1.639 54.706 -6.510 1.639 54.706 H43 40P 94
40P H44 H44 H 0 1 N N N N N N -6.680 0.980 56.369 -6.680 0.980 56.369 H44 40P 95
40P H45 H45 H 0 1 N N N N N N -4.460 0.588 56.778 -4.460 0.588 56.778 H45 40P 96
40P H46 H46 H 0 1 N N N N N N -5.406 -0.907 57.087 -5.406 -0.907 57.087 H46 40P 97
40P H47 H47 H 0 1 N N N N N N -3.857 -2.254 55.760 -3.857 -2.254 55.760 H47 40P 98
40P H48 H48 H 0 1 N N N N N N -2.876 -1.291 56.916 -2.876 -1.291 56.916 H48 40P 99
40P H49 H49 H 0 1 N N N N N N -1.845 -1.352 54.646 -1.845 -1.352 54.646 H49 40P 100
40P H50 H50 H 0 1 N N N N N N -2.303 0.317 55.125 -2.303 0.317 55.125 H50 40P 101
40P H51 H51 H 0 1 N N N N N N -3.862 -1.530 53.236 -3.862 -1.530 53.236 H51 40P 102
40P H52 H52 H 0 1 N N N N N N 1.249 -0.571 52.585 1.249 -0.572 52.585 H52 40P 103
40P H53 H53 H 0 1 N N N N N N 1.518 -0.555 50.083 1.518 -0.554 50.083 H53 40P 104
40P H54 H54 H 0 1 N N N N N N 2.101 1.301 51.388 2.101 1.301 51.388 H54 40P 105
40P H55 H55 H 0 1 N N N N N N -0.616 -0.718 49.167 -0.616 -0.718 49.167 H55 40P 106
40P H56 H56 H 0 1 N N N N N N 0.735 0.969 47.943 0.735 0.969 47.943 H56 40P 107
40P H57 H57 H 0 1 N N N N N N -1.032 1.260 47.805 -1.033 1.260 47.806 H57 40P 108
40P H58 H58 H 0 1 N N N N N N -0.040 2.268 48.912 -0.040 2.268 48.912 H58 40P 109
40P H59 H59 H 0 1 N N N N N N -1.637 1.745 50.587 -1.638 1.745 50.587 H59 40P 110
40P H60 H60 H 0 1 N N N N N N -2.556 0.441 49.761 -2.556 0.441 49.761 H60 40P 111
40P H61 H61 H 0 1 N N N N N N 0.151 -2.628 49.891 0.151 -2.628 49.891 H61 40P 112
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
40P C67 C63 SING N N 1
40P C38 C36 DOUB N N 2
40P C34 C33 SING N N 3
40P C34 C35 SING N N 4
40P C33 C32 SING N N 5
40P C36 C35 SING N N 6
40P C36 C37 SING N N 7
40P C63 C64 SING N N 8
40P C63 C62 SING N N 9
40P C10 C9 SING N N 10
40P C10 C27 SING N N 11
40P C32 N31 DOUB N N 12
40P C32 C27 SING N N 13
40P C64 C17 SING N N 14
40P C37 C48 SING N N 15
40P C62 O66 SING N N 16
40P C62 C61 SING N N 17
40P N31 C30 SING N N 18
40P C9 C8 SING N N 19
40P C12 C27 SING N N 20
40P C12 C13 SING N N 21
40P C12 C15 SING N N 22
40P C27 C28 SING N N 23
40P C8 C13 DOUB N N 24
40P C8 C2 SING N N 25
40P O3 C2 DOUB N N 26
40P C2 O1 SING N N 27
40P O16 C17 SING N N 28
40P O16 C15 SING N N 29
40P C30 C29 SING N N 30
40P C17 C18 SING N N 31
40P C17 O65 SING N N 32
40P C15 C61 SING N N 33
40P C61 O65 SING N N 34
40P C48 C49 SING N N 35
40P C48 O47 SING N N 36
40P C49 C50 SING N N 37
40P C18 C21 SING N N 38
40P C28 C46 SING N N 39
40P O47 C43 SING N N 40
40P C29 C6 SING N N 41
40P C29 C46 SING N N 42
40P C46 C22 SING N N 43
40P C21 O48 SING N N 44
40P C21 C81 SING N N 45
40P C50 C51 SING N N 46
40P C53 C51 SING N N 47
40P O48 C23 SING N N 48
40P C43 C51 SING N N 49
40P C43 O44 SING N N 50
40P C43 C42 SING N N 51
40P C51 O52 SING N N 52
40P O44 C23 SING N N 53
40P C81 C60 SING N N 54
40P C42 C55 SING N N 55
40P C23 C55 SING N N 56
40P C23 C80 SING N N 57
40P C60 C80 SING N N 58
40P C13 H1 SING N N 59
40P C18 H2 SING N N 60
40P C18 H3 SING N N 61
40P C15 H4 SING N N 62
40P O1 H5 SING N N 63
40P C9 H6 SING N N 64
40P C9 H7 SING N N 65
40P C10 H8 SING N N 66
40P C10 H9 SING N N 67
40P C28 H10 SING N N 68
40P C28 H11 SING N N 69
40P C46 H12 SING N N 70
40P C22 H13 SING N N 71
40P C22 H14 SING N N 72
40P C22 H15 SING N N 73
40P C29 H16 SING N N 74
40P C6 H17 SING N N 75
40P C6 H18 SING N N 76
40P C6 H19 SING N N 77
40P C30 H20 SING N N 78
40P C30 H21 SING N N 79
40P C33 H22 SING N N 80
40P C33 H23 SING N N 81
40P C34 H24 SING N N 82
40P C34 H25 SING N N 83
40P C35 H26 SING N N 84
40P C35 H27 SING N N 85
40P C38 H28 SING N N 86
40P C38 H29 SING N N 87
40P C37 H30 SING N N 88
40P C37 H31 SING N N 89
40P C48 H32 SING N N 90
40P C49 H33 SING N N 91
40P C49 H34 SING N N 92
40P C50 H35 SING N N 93
40P C50 H36 SING N N 94
40P O52 H37 SING N N 95
40P C53 H38 SING N N 96
40P C53 H39 SING N N 97
40P C53 H40 SING N N 98
40P C42 H41 SING N N 99
40P C42 H42 SING N N 100
40P C55 H43 SING N N 101
40P C55 H44 SING N N 102
40P C80 H45 SING N N 103
40P C80 H46 SING N N 104
40P C60 H47 SING N N 105
40P C60 H48 SING N N 106
40P C81 H49 SING N N 107
40P C81 H50 SING N N 108
40P C21 H51 SING N N 109
40P C61 H52 SING N N 110
40P C62 H53 SING N N 111
40P O66 H54 SING N N 112
40P C63 H55 SING N N 113
40P C67 H56 SING N N 114
40P C67 H57 SING N N 115
40P C67 H58 SING N N 116
40P C64 H59 SING N N 117
40P C64 H60 SING N N 118
40P C12 H61 SING N N 119
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
40P SMILES ACDLabs 12.01 O=C(O)C8=CC3C1(C(=NCC(C)C(C)C1)CCC/C(=C)CC7OC6(OC2(OC(CCC2)CC45OC3C(O4)C(O)C(C)C5)CC6)C(O)(CC7)C)CC8
40P InChI InChI 1.03 InChI=1S/C41H61NO9/c1-24-8-6-10-32-38(20-25(2)27(4)23-42-32)15-11-28(36(44)45)19-31(38)34-35-33(43)26(3)21-40(49-34,50-35)22-30-9-7-13-39(47-30)16-17-41(51-39)37(5,46)14-12-29(18-24)48-41/h19,25-27,29-31,33-35,43,46H,1,6-18,20-23H2,2-5H3,(H,44,45)/t25-,26+,27-,29-,30+,31+,33+,34-,35+,37+,38+,39+,40+,41+/m0/s1
40P InChIKey InChI 1.03 ZYFHPTPXLHNGQK-OICTYLSBSA-N
40P SMILES_CANONICAL CACTVS 3.385 C[C@H]1CN=C2CCCC(=C)C[C@@H]3CC[C@@](C)(O)[C@]4(CC[C@@]5(CCC[C@H](C[C@@]67C[C@@H](C)[C@@H](O)[C@@H](O6)[C@@H](O7)[C@H]8C=C(CC[C@]28C[C@@H]1C)C(O)=O)O5)O4)O3
40P SMILES CACTVS 3.385 C[CH]1CN=C2CCCC(=C)C[CH]3CC[C](C)(O)[C]4(CC[C]5(CCC[CH](C[C]67C[CH](C)[CH](O)[CH](O6)[CH](O7)[CH]8C=C(CC[C]28C[CH]1C)C(O)=O)O5)O4)O3
40P SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@H]1C[C@]23CCC(=C[C@@H]2[C@H]4[C@H]5[C@@H]([C@@H](C[C@@](O4)(O5)C[C@H]6CCC[C@]7(O6)CC[C@@]8(O7)[C@](CC[C@H](O8)CC(=C)CCCC3=NC[C@@H]1C)(C)O)C)O)C(=O)O
40P SMILES "OpenEye OEToolkits" 1.9.2 CC1CC23CCC(=CC2C4C5C(C(CC(O4)(O5)CC6CCCC7(O6)CCC8(O7)C(CCC(O8)CC(=C)CCCC3=NCC1C)(C)O)C)O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id 40P
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"(1R,3R,7R,10R,11R,14S,23R,24S,26R,31S,32S,33R,34R,35R)-11,34-dihydroxy-11,23,24,35-tetramethyl-16-methylidene-37,38,39,40,41-pentaoxa-21-azaoctacyclo[30.4.1.1~1,33~.1~3,7~.1~7,10~.1~10,14~.0~20,26~.0~26,31~]hentetraconta-20,29-diene-29-carboxylic acid (non-preferred name)"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
40P 'Create component' 2015-01-06 EBI
40P 'Modify name' 2015-01-06 EBI
40P 'Initial release' 2015-06-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
40P C13 C -3.971 -1.515 1
40P C18 C 1.287 0.518 2
40P C15 C -2.398 0.878 3
40P C17 C -0.125 1.298 4
40P O1 O -6.530 -4.536 5
40P O3 O -3.932 -4.495 6
40P C2 C -5.245 -3.765 7
40P C8 C -5.264 -2.262 8
40P C9 C -6.559 -1.519 9
40P C10 C -6.559 -0.025 10
40P C27 C -5.271 0.723 11
40P C28 C -6.531 1.533 12
40P C46 C -6.669 3.025 13
40P C22 C -8.076 3.548 14
40P C29 C -5.588 4.067 15
40P C6 C -6.054 5.491 16
40P C30 C -4.102 3.869 17
40P N31 N -3.337 2.586 18
40P C32 C -3.862 1.183 19
40P C33 C -2.554 -0.244 20
40P C34 C -2.289 -1.948 21
40P C35 C -0.434 -2.497 22
40P C36 C 0.270 -4.211 23
40P C38 C -0.825 -5.320 24
40P C37 C 3.484 -5.163 25
40P C48 C 5.819 -4.146 26
40P C49 C 7.259 -4.592 27
40P C50 C 8.357 -3.565 28
40P C51 C 8.015 -2.104 29
40P O52 O 9.508 -2.054 30
40P C53 C 8.272 -0.611 31
40P O47 O 5.484 -2.701 32
40P C43 C 6.570 -1.680 33
40P O44 O 5.120 -1.285 34
40P C42 C 7.388 -0.428 35
40P C55 C 6.443 0.741 36
40P C23 C 5.036 0.206 37
40P O48 O 3.602 -0.260 38
40P C80 C 5.345 1.667 39
40P C60 C 4.225 2.672 40
40P C81 C 2.797 2.215 41
40P C21 C 2.485 0.753 42
40P O16 O -1.076 0.146 43
40P O65 O -0.841 2.129 44
40P C61 C -1.925 2.291 45
40P C62 C -1.756 3.625 46
40P O66 O -2.800 4.699 47
40P C63 C 0.076 3.804 48
40P C67 C 0.798 5.121 49
40P C64 C 0.909 2.160 50
40P C12 C -3.977 -0.022 51
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
40P C63 C67 SINGLE BEGINDASH 1
40P C38 C36 DOUBLE NONE 2
40P C34 C33 SINGLE NONE 3
40P C34 C35 SINGLE NONE 4
40P C33 C32 SINGLE NONE 5
40P C36 C35 SINGLE NONE 6
40P C36 C37 SINGLE NONE 7
40P C63 C64 SINGLE NONE 8
40P C63 C62 SINGLE NONE 9
40P C10 C9 SINGLE NONE 10
40P C27 C10 SINGLE BEGINDASH 11
40P C32 N31 DOUBLE NONE 12
40P C32 C27 SINGLE NONE 13
40P C17 C64 SINGLE BEGINWEDGE 14
40P C37 C48 SINGLE NONE 15
40P C62 O66 SINGLE BEGINDASH 16
40P C62 C61 SINGLE NONE 17
40P N31 C30 SINGLE NONE 18
40P C9 C8 SINGLE NONE 19
40P C12 C27 SINGLE NONE 20
40P C12 C13 SINGLE NONE 21
40P C12 C15 SINGLE NONE 22
40P C27 C28 SINGLE NONE 23
40P C8 C13 DOUBLE NONE 24
40P C8 C2 SINGLE NONE 25
40P O3 C2 DOUBLE NONE 26
40P C2 O1 SINGLE NONE 27
40P O16 C17 SINGLE NONE 28
40P O16 C15 SINGLE NONE 29
40P C30 C29 SINGLE NONE 30
40P C17 C18 SINGLE NONE 31
40P C17 O65 SINGLE NONE 32
40P C15 C61 SINGLE NONE 33
40P C61 O65 SINGLE NONE 34
40P C48 C49 SINGLE NONE 35
40P C48 O47 SINGLE NONE 36
40P C49 C50 SINGLE NONE 37
40P C18 C21 SINGLE NONE 38
40P C28 C46 SINGLE NONE 39
40P O47 C43 SINGLE NONE 40
40P C29 C6 SINGLE BEGINWEDGE 41
40P C29 C46 SINGLE NONE 42
40P C46 C22 SINGLE BEGINDASH 43
40P C21 O48 SINGLE NONE 44
40P C21 C81 SINGLE NONE 45
40P C50 C51 SINGLE NONE 46
40P C51 C53 SINGLE BEGINWEDGE 47
40P O48 C23 SINGLE NONE 48
40P C43 C51 SINGLE NONE 49
40P C43 O44 SINGLE NONE 50
40P C43 C42 SINGLE BEGINWEDGE 51
40P C51 O52 SINGLE NONE 52
40P O44 C23 SINGLE NONE 53
40P C81 C60 SINGLE NONE 54
40P C42 C55 SINGLE NONE 55
40P C23 C55 SINGLE BEGINWEDGE 56
40P C23 C80 SINGLE NONE 57
40P C60 C80 SINGLE NONE 58
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
40P MurckoScaffold S1 scaffold 'C=C1CCCC2=NCCCC[C@@]23CCC=C[C@@H]3[C@@H]2O[C@@]3(CCC[C@H]2O3)C[C@H]2CCC[C@@]3(CC[C@]4(CCC[C@@H](C1)O4)O3)O2' InChI=1S/C36H53NO5/c1-26-10-6-15-31-33(17-4-5-23-37-31)16-3-2-13-29(33)32-30-14-9-20-36(40-30,41-32)25-28-12-8-19-35(39-28)22-21-34(42-35)18-7-11-27(24-26)38-34/h2,13,27-30,32H,1,3-12,14-25H2/t27-,28+,29+,30+,32-,33+,34-,35+,36-/m0/s1 ZGIMJPOAYRELTF-VTNLEMFVSA-N
40P furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
40P pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
40P C13 S1 1
40P C18 S1 1
40P C15 S1 1
40P C17 S1 1
40P C8 S1 1
40P C9 S1 1
40P C10 S1 1
40P C27 S1 1
40P C28 S1 1
40P C46 S1 1
40P C29 S1 1
40P C30 S1 1
40P N31 S1 1
40P C32 S1 1
40P C33 S1 1
40P C34 S1 1
40P C35 S1 1
40P C36 S1 1
40P C38 S1 1
40P C37 S1 1
40P C48 S1 1
40P C49 S1 1
40P C50 S1 1
40P C51 S1 1
40P O47 S1 1
40P C43 S1 1
40P O44 S1 1
40P C42 S1 1
40P C55 S1 1
40P C23 S1 1
40P O48 S1 1
40P C80 S1 1
40P C60 S1 1
40P C81 S1 1
40P C21 S1 1
40P O16 S1 1
40P O65 S1 1
40P C61 S1 1
40P C62 S1 1
40P C63 S1 1
40P C64 S1 1
40P C12 S1 1
40P C42 F1 1
40P C43 F1 1
40P O44 F1 1
40P C23 F1 1
40P C55 F1 1
40P O48 F1 1
40P C55 F1 2
40P C23 F1 2
40P O44 F1 2
40P C43 F1 2
40P C42 F1 2
40P O47 F1 2
40P C49 F2 1
40P C48 F2 1
40P O47 F2 1
40P C43 F2 1
40P C51 F2 1
40P C50 F2 1
40P O44 F2 1
40P C81 F2 2
40P C21 F2 2
40P O48 F2 2
40P C23 F2 2
40P C80 F2 2
40P C60 F2 2
40P O44 F2 2
40P C62 F2 3
40P C61 F2 3
40P O65 F2 3
40P C17 F2 3
40P C64 F2 3
40P C63 F2 3
40P O16 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 40P
_pdbe_chem_comp_rdkit_properties.exactmw 711.435
_pdbe_chem_comp_rdkit_properties.amw 711.937
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 51
_pdbe_chem_comp_rdkit_properties.NumAtoms 112
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.854
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 8
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 6
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 7
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 7
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 4
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 14
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 388.882
_pdbe_chem_comp_rdkit_properties.tpsa 136.270
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.614
_pdbe_chem_comp_rdkit_properties.CrippenMR 189.848
_pdbe_chem_comp_rdkit_properties.chi0v 24.621
_pdbe_chem_comp_rdkit_properties.chi1v 13.805
_pdbe_chem_comp_rdkit_properties.chi2v 7.323
_pdbe_chem_comp_rdkit_properties.chi3v 7.323
_pdbe_chem_comp_rdkit_properties.chi4v 5.056
_pdbe_chem_comp_rdkit_properties.chi0n 85.621
_pdbe_chem_comp_rdkit_properties.chi1n 44.030
_pdbe_chem_comp_rdkit_properties.chi2n 7.323
_pdbe_chem_comp_rdkit_properties.chi3n 7.323
_pdbe_chem_comp_rdkit_properties.chi4n 5.056
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.660
_pdbe_chem_comp_rdkit_properties.kappa1 8.374
_pdbe_chem_comp_rdkit_properties.kappa2 12.985
_pdbe_chem_comp_rdkit_properties.kappa3 6.205
_pdbe_chem_comp_rdkit_properties.Phi 2.132
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
40P UniChem PDBe 40P
40P UniChem ZINC ZINC000255288066
40P UniChem SureChEMBL SCHEMBL12466376
40P UniChem Nikkaji J1.058.783B
40P UniChem 'PubChem TPHARMA' 16580370
40P UniChem PubChem 11479587
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
40P C13 -3.206 -1.943 -2.294 ETKDGv3 1
40P C18 2.084 -2.816 -0.335 ETKDGv3 2
40P C15 -1.166 -1.792 -0.675 ETKDGv3 3
40P C17 0.604 -3.139 -0.660 ETKDGv3 4
40P O1 -6.621 -2.271 -3.710 ETKDGv3 5
40P O3 -4.797 -3.645 -3.870 ETKDGv3 6
40P C2 -5.292 -2.572 -3.428 ETKDGv3 7
40P C8 -4.480 -1.640 -2.606 ETKDGv3 8
40P C9 -5.139 -0.386 -2.100 ETKDGv3 9
40P C10 -4.125 0.674 -1.657 ETKDGv3 10
40P C27 -3.032 0.105 -0.700 ETKDGv3 11
40P C28 -3.754 -0.505 0.575 ETKDGv3 12
40P C46 -3.087 -0.270 1.959 ETKDGv3 13
40P C22 -3.622 -1.304 2.973 ETKDGv3 14
40P C29 -3.337 1.168 2.517 ETKDGv3 15
40P C6 -2.222 1.581 3.495 ETKDGv3 16
40P C30 -3.495 2.232 1.418 ETKDGv3 17
40P N31 -2.369 2.210 0.515 ETKDGv3 18
40P C32 -2.077 1.302 -0.362 ETKDGv3 19
40P C33 -0.781 1.570 -1.119 ETKDGv3 20
40P C34 -1.014 2.287 -2.456 ETKDGv3 21
40P C35 0.298 2.564 -3.211 ETKDGv3 22
40P C36 1.170 3.618 -2.555 ETKDGv3 23
40P C38 0.732 4.886 -2.484 ETKDGv3 24
40P C37 2.600 3.282 -2.166 ETKDGv3 25
40P C48 2.820 3.225 -0.642 ETKDGv3 26
40P C49 2.878 4.629 -0.003 ETKDGv3 27
40P C50 3.741 4.628 1.268 ETKDGv3 28
40P C51 3.670 3.268 1.991 ETKDGv3 29
40P O52 2.319 3.057 2.345 ETKDGv3 30
40P C53 4.493 3.378 3.298 ETKDGv3 31
40P O47 4.034 2.548 -0.388 ETKDGv3 32
40P C43 4.150 2.129 0.975 ETKDGv3 33
40P O44 3.356 0.965 1.146 ETKDGv3 34
40P C42 5.615 1.701 1.141 ETKDGv3 35
40P C55 5.578 0.287 0.656 ETKDGv3 36
40P C23 4.199 -0.176 1.121 ETKDGv3 37
40P O48 3.706 -1.139 0.199 ETKDGv3 38
40P C80 4.278 -0.788 2.549 ETKDGv3 39
40P C60 3.226 -1.879 2.764 ETKDGv3 40
40P C81 1.980 -1.600 1.933 ETKDGv3 41
40P C21 2.339 -1.488 0.420 ETKDGv3 42
40P O16 -0.002 -2.082 -1.401 ETKDGv3 43
40P O65 -0.132 -3.368 0.523 ETKDGv3 44
40P C61 -1.426 -3.070 0.113 ETKDGv3 45
40P C62 -1.939 -4.336 -0.648 ETKDGv3 46
40P O66 -2.024 -5.395 0.274 ETKDGv3 47
40P C63 -0.966 -4.739 -1.813 ETKDGv3 48
40P C67 -1.156 -6.195 -2.257 ETKDGv3 49
40P C64 0.513 -4.445 -1.474 ETKDGv3 50
40P C12 -2.275 -1.041 -1.509 ETKDGv3 51
40P H1 -2.763 -2.765 -2.815 ETKDGv3 52
40P H2 2.531 -3.655 0.242 ETKDGv3 53
40P H3 2.632 -2.767 -1.302 ETKDGv3 54
40P H4 -0.841 -1.055 0.089 ETKDGv3 55
40P H5 -7.190 -2.898 -4.267 ETKDGv3 56
40P H6 -5.827 -0.650 -1.270 ETKDGv3 57
40P H7 -5.762 0.056 -2.908 ETKDGv3 58
40P H8 -4.682 1.512 -1.196 ETKDGv3 59
40P H9 -3.661 1.088 -2.573 ETKDGv3 60
40P H10 -4.793 -0.122 0.667 ETKDGv3 61
40P H11 -3.901 -1.594 0.412 ETKDGv3 62
40P H12 -1.996 -0.443 1.863 ETKDGv3 63
40P H13 -4.714 -1.168 3.129 ETKDGv3 64
40P H14 -3.107 -1.201 3.950 ETKDGv3 65
40P H15 -3.458 -2.342 2.624 ETKDGv3 66
40P H16 -4.294 1.179 3.086 ETKDGv3 67
40P H17 -2.432 2.586 3.920 ETKDGv3 68
40P H18 -1.238 1.612 2.979 ETKDGv3 69
40P H19 -2.156 0.868 4.342 ETKDGv3 70
40P H20 -4.453 2.121 0.878 ETKDGv3 71
40P H21 -3.544 3.238 1.886 ETKDGv3 72
40P H22 -0.178 0.656 -1.271 ETKDGv3 73
40P H23 -0.153 2.227 -0.487 ETKDGv3 74
40P H24 -1.576 3.231 -2.288 ETKDGv3 75
40P H25 -1.624 1.645 -3.118 ETKDGv3 76
40P H26 0.851 1.607 -3.329 ETKDGv3 77
40P H27 0.047 2.910 -4.237 ETKDGv3 78
40P H28 -0.260 5.156 -2.832 ETKDGv3 79
40P H29 1.367 5.682 -2.112 ETKDGv3 80
40P H30 2.869 2.289 -2.585 ETKDGv3 81
40P H31 3.300 4.008 -2.635 ETKDGv3 82
40P H32 1.978 2.651 -0.203 ETKDGv3 83
40P H33 3.308 5.374 -0.708 ETKDGv3 84
40P H34 1.845 4.953 0.252 ETKDGv3 85
40P H35 4.797 4.840 0.987 ETKDGv3 86
40P H36 3.400 5.448 1.939 ETKDGv3 87
40P H37 2.271 2.259 2.934 ETKDGv3 88
40P H38 5.532 3.717 3.096 ETKDGv3 89
40P H39 4.515 2.406 3.832 ETKDGv3 90
40P H40 4.026 4.122 3.979 ETKDGv3 91
40P H41 6.313 2.326 0.541 ETKDGv3 92
40P H42 5.965 1.671 2.191 ETKDGv3 93
40P H43 5.634 0.278 -0.456 ETKDGv3 94
40P H44 6.423 -0.316 1.056 ETKDGv3 95
40P H45 5.273 -1.241 2.748 ETKDGv3 96
40P H46 4.132 0.014 3.305 ETKDGv3 97
40P H47 3.646 -2.865 2.465 ETKDGv3 98
40P H48 2.957 -1.936 3.842 ETKDGv3 99
40P H49 1.240 -2.392 2.147 ETKDGv3 100
40P H50 1.526 -0.643 2.275 ETKDGv3 101
40P H51 1.703 -0.700 -0.040 ETKDGv3 102
40P H52 -2.053 -2.874 0.998 ETKDGv3 103
40P H53 -2.956 -4.164 -1.059 ETKDGv3 104
40P H54 -2.823 -5.227 0.839 ETKDGv3 105
40P H55 -1.191 -4.126 -2.703 ETKDGv3 106
40P H56 -2.220 -6.377 -2.520 ETKDGv3 107
40P H57 -0.534 -6.402 -3.155 ETKDGv3 108
40P H58 -0.857 -6.901 -1.453 ETKDGv3 109
40P H59 1.103 -4.360 -2.414 ETKDGv3 110
40P H60 0.937 -5.280 -0.871 ETKDGv3 111
40P H61 -1.728 -0.539 -2.331 ETKDGv3 112
#