data_44H
#
_chem_comp.id 44H
_chem_comp.name D-Mannitol-1-phosphate
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H15 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1-O-phosphono-D-mannitol
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-02-11
_chem_comp.pdbx_modified_date 2022-04-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 262.152
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 44H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4S2C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
44H O3P O3P O 0 1 N N N N N N 31.682 14.298 137.946 -4.120 -1.279 -1.078 O3P 44H 1
44H P P P 0 1 N N N N N N 30.665 14.508 136.836 -3.917 -0.106 0.007 P 44H 2
44H O1P O1P O 0 1 N N N N N N 29.216 14.304 137.203 -4.973 1.076 -0.276 O1P 44H 3
44H O2P O2P O 0 1 N N N N N N 30.970 15.765 136.054 -4.136 -0.648 1.366 O2P 44H 4
44H O1 O6 O 0 1 N N N N N N 31.041 13.308 135.818 -2.419 0.474 -0.105 O1 44H 5
44H C1 C6 C 0 1 N N N N N N 30.878 11.942 136.192 -1.258 -0.304 0.195 C1 44H 6
44H C2 C5 C 0 1 N N R N N N 30.848 11.091 134.938 -0.005 0.549 -0.013 C2 44H 7
44H O2 O5 O 0 1 N N N N N N 32.015 11.352 134.159 0.004 1.621 0.931 O2 44H 8
44H C3 C4 C 0 1 N N R N N N 30.849 9.593 135.191 1.240 -0.318 0.186 C3 44H 9
44H O3 O4 O 0 1 N N N N N N 29.796 9.279 136.093 1.231 -1.390 -0.758 O3 44H 10
44H C4 C3 C 0 1 N N R N N N 30.698 8.863 133.865 2.493 0.535 -0.022 C4 44H 11
44H O4 O3 O 0 1 N N N N N N 29.310 8.795 133.406 2.435 1.161 -1.305 O4 44H 12
44H C5 C2 C 0 1 N N R N N N 31.178 7.436 134.010 3.735 -0.357 0.054 C5 44H 13
44H C6 C1 C 0 1 N N N N N N 32.615 7.037 134.151 4.988 0.496 -0.154 C6 44H 14
44H O6 O1 O 0 1 N N N N N N 32.898 5.864 133.382 6.138 -0.351 -0.199 O6 44H 15
44H O5 O2 O 0 1 N Y N N N N 30.207 6.376 134.309 3.793 -0.983 1.337 O5 44H 16
44H H1 H1 H 0 1 N N N N N N 32.317 15.004 137.932 -3.991 -0.994 -1.993 H1 44H 17
44H H2 H2 H 0 1 N N N N N N 28.700 15.029 136.871 -5.897 0.797 -0.226 H2 44H 18
44H H3 H3 H 0 1 N N N N N N 29.934 11.820 136.744 -1.303 -0.637 1.232 H3 44H 19
44H H4 H4 H 0 1 N N N N N N 31.719 11.631 136.830 -1.222 -1.171 -0.464 H4 44H 20
44H H5 H5 H 0 1 N N N N N N 29.948 11.348 134.360 -0.006 0.955 -1.025 H5 44H 21
44H H6 H6 H 0 1 N N N N N N 32.068 12.281 133.968 0.006 1.332 1.854 H6 44H 22
44H H7 H7 H 0 1 N N N N N N 31.816 9.314 135.635 1.241 -0.724 1.198 H7 44H 23
44H H8 H8 H 0 1 N N N N N N 29.924 9.752 136.907 1.229 -1.102 -1.681 H8 44H 24
44H H9 H9 H 0 1 N N N N N N 31.313 9.371 133.108 2.546 1.299 0.753 H9 44H 25
44H H10 H10 H 0 1 N N N N N N 28.967 9.675 133.301 2.386 0.540 -2.044 H10 44H 26
44H H11 H11 H 0 1 N N N N N N 31.159 7.246 132.927 3.682 -1.121 -0.721 H11 44H 27
44H H12 H12 H 0 1 N N N N N N 32.830 6.833 135.210 4.903 1.043 -1.093 H12 44H 28
44H H13 H13 H 0 1 N N N N N N 33.253 7.861 133.799 5.089 1.202 0.670 H13 44H 29
44H H14 H14 H 0 1 N N N N N N 33.813 5.630 133.486 6.971 0.123 -0.329 H14 44H 30
44H H15 H15 H 0 1 N N N N N N 30.657 5.542 134.369 3.842 -0.362 2.077 H15 44H 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
44H O6 C6 SING N N 1
44H O4 C4 SING N N 2
44H C4 C5 SING N N 3
44H C4 C3 SING N N 4
44H C5 C6 SING N N 5
44H O2 C2 SING N N 6
44H C2 C3 SING N N 7
44H C2 C1 SING N N 8
44H C3 O3 SING N N 9
44H O1 C1 SING N N 10
44H O1 P SING N N 11
44H O2P P DOUB N N 12
44H P O1P SING N N 13
44H P O3P SING N N 14
44H C5 O5 SING N N 15
44H O3P H1 SING N N 16
44H O1P H2 SING N N 17
44H C1 H3 SING N N 18
44H C1 H4 SING N N 19
44H C2 H5 SING N N 20
44H O2 H6 SING N N 21
44H C3 H7 SING N N 22
44H O3 H8 SING N N 23
44H C4 H9 SING N N 24
44H O4 H10 SING N N 25
44H C5 H11 SING N N 26
44H C6 H12 SING N N 27
44H C6 H13 SING N N 28
44H O6 H14 SING N N 29
44H O5 H15 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
44H SMILES ACDLabs 12.01 O=P(OCC(O)C(O)C(O)C(O)CO)(O)O
44H InChI InChI 1.03 InChI=1S/C6H15O9P/c7-1-3(8)5(10)6(11)4(9)2-15-16(12,13)14/h3-11H,1-2H2,(H2,12,13,14)/t3-,4-,5-,6-/m1/s1
44H InChIKey InChI 1.03 GACTWZZMVMUKNG-KVTDHHQDSA-N
44H SMILES_CANONICAL CACTVS 3.385 OC[C@@H](O)[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O
44H SMILES CACTVS 3.385 OC[CH](O)[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O
44H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C([C@H]([C@H]([C@@H](C(CO)O)O)O)O)OP(=O)(O)O
44H SMILES "OpenEye OEToolkits" 2.0.7 C(C(C(C(C(COP(=O)(O)O)O)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
44H "SYSTEMATIC NAME" ACDLabs 12.01 1-O-phosphono-D-mannitol
44H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{R})-2,3,4,5,6-pentakis(oxidanyl)hexyl] dihydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 44H
_pdbx_chem_comp_synonyms.name 1-O-phosphono-D-mannitol
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
44H 'Create component' 2015-02-11 RCSB
44H 'Modify synonyms' 2020-06-05 PDBE
44H 'Modify name' 2021-05-07 PDBE
44H 'Initial release' 2022-04-27 RCSB
#
_pdbe_chem_comp_synonyms.comp_id 44H
_pdbe_chem_comp_synonyms.name 1-O-phosphono-D-mannitol
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
44H O3P O 5.854 -1.674 1
44H P P 5.104 -0.375 2
44H O1P O 4.354 0.924 3
44H O2P O 3.805 -1.125 4
44H O1 O 6.404 0.375 5
44H C1 C 7.702 -0.375 6
44H C2 C 9.002 0.375 7
44H O2 O 9.002 1.875 8
44H C3 C 10.301 -0.375 9
44H O3 O 10.301 -1.875 10
44H C4 C 11.600 0.375 11
44H O4 O 11.600 1.875 12
44H C5 C 12.899 -0.375 13
44H C6 C 14.198 0.375 14
44H O6 O 15.497 -0.375 15
44H O5 O 12.899 -1.875 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
44H O6 C6 SINGLE NONE 1
44H C4 O4 SINGLE BEGINDASH 2
44H C4 C5 SINGLE NONE 3
44H C4 C3 SINGLE NONE 4
44H C5 C6 SINGLE NONE 5
44H C2 O2 SINGLE BEGINWEDGE 6
44H C2 C3 SINGLE NONE 7
44H C2 C1 SINGLE NONE 8
44H C3 O3 SINGLE BEGINDASH 9
44H O1 C1 SINGLE NONE 10
44H O1 P SINGLE NONE 11
44H O2P P DOUBLE NONE 12
44H P O1P SINGLE NONE 13
44H P O3P SINGLE NONE 14
44H C5 O5 SINGLE BEGINWEDGE 15
#
_pdbe_chem_comp_substructure.comp_id 44H
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
44H O3P F1 1
44H P F1 1
44H O2P F1 1
44H O1 F1 1
44H O1P F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 44H
_pdbe_chem_comp_rdkit_properties.exactmw 262.045
_pdbe_chem_comp_rdkit_properties.amw 262.151
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.468
_pdbe_chem_comp_rdkit_properties.tpsa 167.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.468
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.109
_pdbe_chem_comp_rdkit_properties.chi0v 8.016
_pdbe_chem_comp_rdkit_properties.chi1v 4.666
_pdbe_chem_comp_rdkit_properties.chi2v 1.276
_pdbe_chem_comp_rdkit_properties.chi3v 1.276
_pdbe_chem_comp_rdkit_properties.chi4v 0.591
_pdbe_chem_comp_rdkit_properties.chi0n 22.121
_pdbe_chem_comp_rdkit_properties.chi1n 10.063
_pdbe_chem_comp_rdkit_properties.chi2n 0.962
_pdbe_chem_comp_rdkit_properties.chi3n 0.962
_pdbe_chem_comp_rdkit_properties.chi4n 0.396
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.090
_pdbe_chem_comp_rdkit_properties.kappa1 3.954
_pdbe_chem_comp_rdkit_properties.kappa2 6.598
_pdbe_chem_comp_rdkit_properties.kappa3 5.848
_pdbe_chem_comp_rdkit_properties.Phi 1.630
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
44H UniChem PDBe 44H
44H UniChem ChEBI 16298
44H UniChem ZINC ZINC000003869812
44H UniChem SureChEMBL SCHEMBL428503
44H UniChem HMDB HMDB0001530
44H UniChem PubChem 130418
44H UniChem NMRShiftDB 60028261
44H UniChem MetaboLights MTBLC16298
44H UniChem BRENDA 113265
44H UniChem BRENDA 114624
44H UniChem BRENDA 210613
44H UniChem BRENDA 23145
44H UniChem BRENDA 2652
44H UniChem BRENDA 43995
44H UniChem BRENDA 43996
44H UniChem BRENDA 5992
44H UniChem BRENDA 94002
44H UniChem Nikkaji J923.291E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
44H O3P 4.886 -0.721 0.381 ETKDGv3 1
44H P 4.243 0.656 -0.367 ETKDGv3 2
44H O1P 4.236 1.953 0.722 ETKDGv3 3
44H O2P 5.104 1.018 -1.555 ETKDGv3 4
44H O1 2.660 0.335 -0.914 ETKDGv3 5
44H C1 1.858 0.020 0.200 ETKDGv3 6
44H C2 0.441 -0.342 -0.282 ETKDGv3 7
44H O2 0.517 -1.371 -1.239 ETKDGv3 8
44H C3 -0.487 -0.745 0.909 ETKDGv3 9
44H O3 -0.446 0.200 1.950 ETKDGv3 10
44H C4 -1.966 -1.092 0.537 ETKDGv3 11
44H O4 -2.037 -1.841 -0.650 ETKDGv3 12
44H C5 -2.965 0.097 0.467 ETKDGv3 13
44H C6 -2.666 1.097 -0.664 ETKDGv3 14
44H O6 -3.765 1.941 -0.881 ETKDGv3 15
44H O5 -4.262 -0.413 0.282 ETKDGv3 16
44H H1 5.774 -0.437 0.714 ETKDGv3 17
44H H2 4.109 1.540 1.613 ETKDGv3 18
44H H3 2.276 -0.848 0.760 ETKDGv3 19
44H H4 1.790 0.899 0.879 ETKDGv3 20
44H H5 0.035 0.552 -0.789 ETKDGv3 21
44H H6 0.911 -2.167 -0.795 ETKDGv3 22
44H H7 -0.054 -1.681 1.327 ETKDGv3 23
44H H8 -0.591 1.097 1.553 ETKDGv3 24
44H H9 -2.341 -1.729 1.373 ETKDGv3 25
44H H10 -1.717 -2.756 -0.435 ETKDGv3 26
44H H11 -2.936 0.659 1.430 ETKDGv3 27
44H H12 -2.453 0.554 -1.609 ETKDGv3 28
44H H13 -1.782 1.719 -0.409 ETKDGv3 29
44H H14 -3.802 2.566 -0.110 ETKDGv3 30
44H H15 -4.569 -0.757 1.161 ETKDGv3 31
#