data_4AF
#
_chem_comp.id 4AF
_chem_comp.name 4-ACETYL-L-PHENYLALANINE
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C11 H13 N O3"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms P-ACETYLPHENYLALANINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-05-04
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.226
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4AF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZH6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4AF C11 C11 C 0 1 N N N N N N 75.064 44.472 -7.565 4.768 1.203 0.558 C11 4AF 1
4AF C8 C8 C 0 1 N N N N N N 74.170 43.274 -7.244 4.014 -0.050 0.195 C8 4AF 2
4AF O2 O2 O 0 1 N N N N N N 73.178 43.022 -7.923 4.597 -1.111 0.128 O2 4AF 3
4AF C7 C7 C 0 1 Y N N N N N 74.485 42.338 -6.108 2.569 0.014 -0.078 C7 4AF 4
4AF C9 C9 C 0 1 Y N N N N N 73.553 41.337 -5.895 1.865 -1.147 -0.415 C9 4AF 5
4AF C10 C10 C 0 1 Y N N N N N 73.757 40.421 -4.900 0.512 -1.079 -0.669 C10 4AF 6
4AF C6 C6 C 0 1 Y N N N N N 75.644 42.432 -5.340 1.891 1.235 0.004 C6 4AF 7
4AF C5 C5 C 0 1 Y N N N N N 75.841 41.490 -4.344 0.538 1.286 -0.253 C5 4AF 8
4AF C4 C4 C 0 1 Y N N N N N 74.903 40.489 -4.135 -0.151 0.134 -0.591 C4 4AF 9
4AF C3 C3 C 0 1 N N N N N N 75.041 39.457 -3.037 -1.630 0.199 -0.871 C3 4AF 10
4AF CA C1 C 0 1 N N S Y N N 76.340 38.735 -3.082 -2.405 -0.018 0.431 C1 4AF 11
4AF C C2 C 0 1 N N N Y N Y 76.324 37.728 -1.917 -3.878 0.168 0.175 C2 4AF 12
4AF OXT OX1 O 0 1 N Y N Y N Y 76.954 36.681 -2.003 -4.397 1.405 0.112 OX1 4AF 13
4AF O O O 0 1 N N N Y N Y 75.684 37.953 -0.877 -4.593 -0.795 0.028 O 4AF 14
4AF N N N 0 1 N N N Y Y N 76.449 38.063 -4.380 -2.162 -1.381 0.924 N 4AF 15
4AF H111 H111 H 0 0 N N N N N N 75.279 45.028 -6.641 5.818 0.961 0.723 H111 4AF 16
4AF H112 H112 H 0 0 N N N N N N 76.007 44.118 -8.007 4.685 1.925 -0.254 H112 4AF 17
4AF H113 H113 H 0 0 N N N N N N 74.549 45.132 -8.279 4.346 1.630 1.468 H113 4AF 18
4AF H9 H9 H 0 1 N N N N N N 72.668 41.280 -6.512 2.381 -2.094 -0.476 H9 4AF 19
4AF H10 H10 H 0 1 N N N N N N 73.025 39.649 -4.714 -0.033 -1.974 -0.930 H10 4AF 20
4AF H6 H6 H 0 1 N N N N N N 76.366 43.215 -5.516 2.427 2.134 0.268 H6 4AF 21
4AF H5 H5 H 0 1 N N N N N N 76.727 41.535 -3.728 0.013 2.228 -0.190 H5 4AF 22
4AF H31 H31 H 0 1 N N N N N N 74.964 39.971 -2.067 -1.879 1.176 -1.283 H31 4AF 23
4AF H32 H32 H 0 1 N N N N N N 74.243 38.713 -3.178 -1.899 -0.577 -1.587 H32 4AF 24
4AF HA H1 H 0 1 N N N Y N N 77.206 39.405 -2.976 -2.071 0.703 1.177 H1 4AF 25
4AF HXT HX1 H 0 1 N Y N Y N Y 76.843 36.177 -1.205 -5.347 1.474 -0.054 HX1 4AF 26
4AF H HN1 H 0 1 N N N Y Y N 76.474 38.747 -5.109 -2.611 -1.528 1.815 HN1 4AF 27
4AF H2 HN2 H 0 1 N Y N Y Y N 77.288 37.520 -4.404 -2.463 -2.068 0.249 HN2 4AF 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4AF C11 C8 SING N N 1
4AF C11 H111 SING N N 2
4AF C11 H112 SING N N 3
4AF C11 H113 SING N N 4
4AF C8 O2 DOUB N N 5
4AF C8 C7 SING N N 6
4AF C7 C9 SING Y N 7
4AF C7 C6 DOUB Y N 8
4AF C9 C10 DOUB Y N 9
4AF C9 H9 SING N N 10
4AF C10 C4 SING Y N 11
4AF C10 H10 SING N N 12
4AF C6 C5 SING Y N 13
4AF C6 H6 SING N N 14
4AF C5 C4 DOUB Y N 15
4AF C5 H5 SING N N 16
4AF C4 C3 SING N N 17
4AF C3 CA SING N N 18
4AF C3 H31 SING N N 19
4AF C3 H32 SING N N 20
4AF CA C SING N N 21
4AF CA N SING N N 22
4AF CA HA SING N N 23
4AF C OXT SING N N 24
4AF C O DOUB N N 25
4AF OXT HXT SING N N 26
4AF N H SING N N 27
4AF N H2 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4AF SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ccc(cc1)C(=O)C
4AF SMILES_CANONICAL CACTVS 3.352 CC(=O)c1ccc(C[C@H](N)C(O)=O)cc1
4AF SMILES CACTVS 3.352 CC(=O)c1ccc(C[CH](N)C(O)=O)cc1
4AF SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 CC(=O)c1ccc(cc1)C[C@@H](C(=O)O)N
4AF SMILES "OpenEye OEToolkits" 1.6.1 CC(=O)c1ccc(cc1)CC(C(=O)O)N
4AF InChI InChI 1.03 InChI=1S/C11H13NO3/c1-7(13)9-4-2-8(3-5-9)6-10(12)11(14)15/h2-5,10H,6,12H2,1H3,(H,14,15)/t10-/m0/s1
4AF InChIKey InChI 1.03 ZXSBHXZKWRIEIA-JTQLQIEISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4AF "SYSTEMATIC NAME" ACDLabs 10.04 4-acetyl-L-phenylalanine
4AF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-3-(4-ethanoylphenyl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4AF 'Create component' 2005-05-04 RCSB
4AF 'Modify descriptor' 2011-06-04 RCSB
4AF 'Modify synonyms' 2021-03-01 PDBE
4AF 'Modify backbone' 2023-11-03 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 4AF
_pdbx_chem_comp_synonyms.name P-ACETYLPHENYLALANINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 4AF
_pdbe_chem_comp_synonyms.name P-ACETYLPHENYLALANINE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4AF C11 C 5.598 -5.340 1
4AF C8 C 4.299 -4.590 2
4AF O2 O 3.000 -5.340 3
4AF C7 C 4.299 -3.090 4
4AF C9 C 3.000 -2.340 5
4AF C10 C 3.000 -0.840 6
4AF C6 C 5.598 -2.340 7
4AF C5 C 5.598 -0.840 8
4AF C4 C 4.299 -0.090 9
4AF C3 C 4.299 1.410 10
4AF CA C 5.598 2.160 11
4AF C C 5.598 3.660 12
4AF OXT O 6.897 4.410 13
4AF O O 4.299 4.410 14
4AF N N 6.897 1.410 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4AF C11 C8 SINGLE NONE 1
4AF C8 O2 DOUBLE NONE 2
4AF C8 C7 SINGLE NONE 3
4AF C7 C9 DOUBLE NONE 4
4AF C7 C6 SINGLE NONE 5
4AF C9 C10 SINGLE NONE 6
4AF C10 C4 DOUBLE NONE 7
4AF C6 C5 DOUBLE NONE 8
4AF C5 C4 SINGLE NONE 9
4AF C4 C3 SINGLE NONE 10
4AF C3 CA SINGLE NONE 11
4AF CA C SINGLE NONE 12
4AF CA N SINGLE BEGINWEDGE 13
4AF C OXT SINGLE NONE 14
4AF C O DOUBLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4AF MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4AF peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
4AF phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4AF C7 S1 1
4AF C9 S1 1
4AF C10 S1 1
4AF C6 S1 1
4AF C5 S1 1
4AF C4 S1 1
4AF O F1 1
4AF C F1 1
4AF CA F1 1
4AF N F1 1
4AF C7 F2 1
4AF C9 F2 1
4AF C10 F2 1
4AF C4 F2 1
4AF C5 F2 1
4AF C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4AF
_pdbe_chem_comp_rdkit_properties.exactmw 207.090
_pdbe_chem_comp_rdkit_properties.amw 207.229
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.181
_pdbe_chem_comp_rdkit_properties.tpsa 80.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.734
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.230
_pdbe_chem_comp_rdkit_properties.chi0v 7.172
_pdbe_chem_comp_rdkit_properties.chi1v 3.586
_pdbe_chem_comp_rdkit_properties.chi2v 1.289
_pdbe_chem_comp_rdkit_properties.chi3v 1.289
_pdbe_chem_comp_rdkit_properties.chi4v 0.658
_pdbe_chem_comp_rdkit_properties.chi0n 20.172
_pdbe_chem_comp_rdkit_properties.chi1n 9.889
_pdbe_chem_comp_rdkit_properties.chi2n 1.289
_pdbe_chem_comp_rdkit_properties.chi3n 1.289
_pdbe_chem_comp_rdkit_properties.chi4n 0.658
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.680
_pdbe_chem_comp_rdkit_properties.kappa1 2.918
_pdbe_chem_comp_rdkit_properties.kappa2 4.704
_pdbe_chem_comp_rdkit_properties.kappa3 3.178
_pdbe_chem_comp_rdkit_properties.Phi 0.915
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4AF UniChem PDBe 4AF
4AF UniChem ZINC ZINC000014982780
4AF UniChem eMolecules 29253397
4AF UniChem fdasrs Y61IJN1HNY
4AF UniChem 'PubChem TPHARMA' 16411349
4AF UniChem Nikkaji J1.854.447D
4AF UniChem BRENDA 120741
4AF UniChem BRENDA 136453
4AF UniChem BRENDA 157237
4AF UniChem ChemicalBook CB5105579
4AF UniChem ChemicalBook CB9736214
4AF UniChem SureChEMBL SCHEMBL93538
4AF UniChem PubChem 26338488
4AF UniChem PubChem 6420123
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4AF C11 4.666 -0.880 0.328 ETKDGv3 1
4AF C8 3.825 0.359 0.273 ETKDGv3 2
4AF O2 4.368 1.465 0.542 ETKDGv3 3
4AF C7 2.382 0.305 -0.088 ETKDGv3 4
4AF C9 1.645 1.433 -0.131 ETKDGv3 5
4AF C10 0.212 1.385 -0.487 ETKDGv3 6
4AF C6 1.722 -0.991 -0.407 ETKDGv3 7
4AF C5 0.424 -1.031 -0.733 ETKDGv3 8
4AF C4 -0.376 0.214 -0.783 ETKDGv3 9
4AF C3 -1.844 0.154 -1.119 ETKDGv3 10
4AF CA -2.725 0.191 0.149 ETKDGv3 11
4AF C -4.174 0.282 -0.231 ETKDGv3 12
4AF OXT -4.877 1.460 0.001 ETKDGv3 13
4AF O -4.752 -0.696 -0.778 ETKDGv3 14
4AF N -2.515 -0.986 0.998 ETKDGv3 15
4AF H111 4.681 -1.370 -0.668 ETKDGv3 16
4AF H112 5.710 -0.631 0.612 ETKDGv3 17
4AF H113 4.254 -1.582 1.084 ETKDGv3 18
4AF H9 2.083 2.397 0.096 ETKDGv3 19
4AF H10 -0.357 2.306 -0.502 ETKDGv3 20
4AF H6 2.278 -1.918 -0.378 ETKDGv3 21
4AF H5 -0.041 -1.983 -0.957 ETKDGv3 22
4AF H31 -2.101 1.018 -1.772 ETKDGv3 23
4AF H32 -2.060 -0.765 -1.706 ETKDGv3 24
4AF HA -2.469 1.102 0.736 ETKDGv3 25
4AF HXT -5.853 1.542 -0.257 ETKDGv3 26
4AF H -1.565 -0.928 1.431 ETKDGv3 27
4AF H2 -2.542 -1.853 0.413 ETKDGv3 28
#