data_4BA
#
_chem_comp.id 4BA
_chem_comp.name '4-[(2-CARBOXY-ETHYLAMINO)-METHYL]-BENZOIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C11 H13 N O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-08-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 223.225
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4BA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FAV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4BA N N4C N 0 1 N N N Y Y N 4.456 2.042 71.358 -0.002 -0.074 1.579 N4C 4BA 1
4BA C5C C5C C 0 1 N N N N N N 5.752 1.745 70.781 -0.038 0.387 2.973 C5C 4BA 2
4BA C6C C6C C 0 1 N N N N N N 6.737 1.758 71.924 0.077 -0.815 3.912 C6C 4BA 3
4BA C7C C7C C 0 1 N N N N N N 8.138 1.857 71.411 0.040 -0.341 5.342 C7C 4BA 4
4BA O8C O8C O 0 1 N N N N N N 8.512 1.522 70.153 0.127 -1.228 6.346 O8C 4BA 5
4BA O9C O9C O 0 1 N N N N N N 8.841 2.358 72.260 -0.066 0.837 5.586 O9C 4BA 6
4BA C1D C1D C 0 1 Y N N Y N N 3.551 0.257 71.052 -0.087 0.718 -0.715 C1D 4BA 7
4BA C2D C2D C 0 1 Y N N Y N N 2.582 0.831 70.063 -1.268 0.423 -1.373 C2D 4BA 8
4BA C3D C3D C 0 1 Y N N Y N N 2.394 0.177 68.750 -1.248 0.052 -2.701 C3D 4BA 9
4BA C4D C4D C 0 1 Y N N Y N N 3.170 -1.050 68.409 -0.032 -0.025 -3.383 C4D 4BA 10
4BA C5D C5D C 0 1 Y N N Y N N 4.135 -1.644 69.400 1.156 0.273 -2.713 C5D 4BA 11
4BA C6D C6D C 0 1 Y N N Y N N 4.316 -0.988 70.732 1.121 0.648 -1.386 C6D 4BA 12
4BA C7D C7D C 0 1 N N N Y N N 3.820 1.037 72.282 -0.117 1.122 0.735 C7D 4BA 13
4BA C C C 0 1 N N N Y N Y 3.029 -1.629 67.019 -0.003 -0.422 -4.805 C 4BA 14
4BA O O O 0 1 N N N Y N Y 2.275 -1.072 66.216 -1.038 -0.681 -5.385 O 4BA 15
4BA OXT O2 O 0 1 N Y N Y N Y 4.160 -2.192 66.636 1.171 -0.496 -5.460 O2 4BA 16
4BA H HN4 H 0 1 N Y N Y Y N 3.802 2.255 70.604 0.919 -0.452 1.423 HN4 4BA 17
4BA H15 H15 H 0 1 N N N N N N 5.768 0.797 70.192 -0.978 0.905 3.161 H15 4BA 18
4BA H25 H25 H 0 1 N N N N N N 6.032 2.429 69.946 0.793 1.068 3.152 H25 4BA 19
4BA H16 H16 H 0 1 N N N N N N 6.507 2.564 72.658 1.017 -1.333 3.725 H16 4BA 20
4BA H26 H26 H 0 1 N N N N N N 6.603 0.877 72.595 -0.754 -1.496 3.734 H26 4BA 21
4BA HO8 HO8 H 0 1 N N N N N N 9.402 1.584 69.827 0.104 -0.924 7.263 HO8 4BA 22
4BA HC2 HC2 H 0 1 N N N Y N N 2.004 1.739 70.302 -2.208 0.483 -0.844 HC2 4BA 23
4BA HC3 HC3 H 0 1 N N N Y N N 1.677 0.602 68.027 -2.171 -0.177 -3.213 HC3 4BA 24
4BA HC5 HC5 H 0 1 N N N Y N N 4.706 -2.554 69.151 2.100 0.215 -3.234 HC5 4BA 25
4BA HC6 HC6 H 0 1 N N N Y N N 5.009 -1.419 71.473 2.039 0.879 -0.867 HC6 4BA 26
4BA H17 H17 H 0 1 N N N Y N N 4.367 0.602 73.150 -1.056 1.631 0.951 H17 4BA 27
4BA H27 H27 H 0 1 N N N Y N N 3.009 1.317 72.994 0.716 1.794 0.942 H27 4BA 28
4BA HXT HO2 H 0 1 N Y N Y N Y 4.071 -2.555 65.762 1.191 -0.755 -6.391 HO2 4BA 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4BA N C5C SING N N 1
4BA N C7D SING N N 2
4BA N H SING N N 3
4BA C5C C6C SING N N 4
4BA C5C H15 SING N N 5
4BA C5C H25 SING N N 6
4BA C6C C7C SING N N 7
4BA C6C H16 SING N N 8
4BA C6C H26 SING N N 9
4BA C7C O8C SING N N 10
4BA C7C O9C DOUB N N 11
4BA O8C HO8 SING N N 12
4BA C1D C2D DOUB Y N 13
4BA C1D C6D SING Y N 14
4BA C1D C7D SING N N 15
4BA C2D C3D SING Y N 16
4BA C2D HC2 SING N N 17
4BA C3D C4D DOUB Y N 18
4BA C3D HC3 SING N N 19
4BA C4D C5D SING Y N 20
4BA C4D C SING N N 21
4BA C5D C6D DOUB Y N 22
4BA C5D HC5 SING N N 23
4BA C6D HC6 SING N N 24
4BA C7D H17 SING N N 25
4BA C7D H27 SING N N 26
4BA C O DOUB N N 27
4BA C OXT SING N N 28
4BA OXT HXT SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4BA SMILES ACDLabs 10.04 'O=C(O)c1ccc(cc1)CNCCC(=O)O'
4BA SMILES_CANONICAL CACTVS 3.341 'OC(=O)CCNCc1ccc(cc1)C(O)=O'
4BA SMILES CACTVS 3.341 'OC(=O)CCNCc1ccc(cc1)C(O)=O'
4BA SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1CNCCC(=O)O)C(=O)O'
4BA SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1CNCCC(=O)O)C(=O)O'
4BA InChI InChI 1.03 'InChI=1S/C11H13NO4/c13-10(14)5-6-12-7-8-1-3-9(4-2-8)11(15)16/h1-4,12H,5-7H2,(H,13,14)(H,15,16)'
4BA InChIKey InChI 1.03 DRKHULAQAPAOAI-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4BA 'SYSTEMATIC NAME' ACDLabs 10.04 '4-{[(2-carboxyethyl)amino]methyl}benzoic acid'
4BA 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '4-[(2-carboxyethylamino)methyl]benzoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4BA 'Create component' 2000-08-08 RCSB
4BA 'Modify descriptor' 2011-06-04 RCSB
4BA 'Modify backbone' 2023-11-03 PDBE
4BA 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 4BA
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4BA N N 5.598 -1.500 1
4BA C5C C 5.598 -3.000 2
4BA C6C C 4.299 -3.750 3
4BA C7C C 4.299 -5.250 4
4BA O8C O 3.000 -6.000 5
4BA O9C O 5.598 -6.000 6
4BA C1D C 6.897 0.750 7
4BA C2D C 8.196 1.500 8
4BA C3D C 8.196 3.000 9
4BA C4D C 6.897 3.750 10
4BA C5D C 5.598 3.000 11
4BA C6D C 5.598 1.500 12
4BA C7D C 6.897 -0.750 13
4BA C C 6.897 5.250 14
4BA O O 8.196 6.000 15
4BA OXT O 5.598 6.000 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4BA N C5C SINGLE NONE 1
4BA N C7D SINGLE NONE 2
4BA C5C C6C SINGLE NONE 3
4BA C6C C7C SINGLE NONE 4
4BA C7C O8C SINGLE NONE 5
4BA C7C O9C DOUBLE NONE 6
4BA C1D C2D DOUBLE NONE 7
4BA C1D C6D SINGLE NONE 8
4BA C1D C7D SINGLE NONE 9
4BA C2D C3D SINGLE NONE 10
4BA C3D C4D DOUBLE NONE 11
4BA C4D C5D SINGLE NONE 12
4BA C4D C SINGLE NONE 13
4BA C5D C6D DOUBLE NONE 14
4BA C O DOUBLE NONE 15
4BA C OXT SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4BA MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4BA phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4BA C1D S1 1
4BA C2D S1 1
4BA C3D S1 1
4BA C4D S1 1
4BA C5D S1 1
4BA C6D S1 1
4BA C1D F1 1
4BA C2D F1 1
4BA C3D F1 1
4BA C4D F1 1
4BA C5D F1 1
4BA C6D F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4BA
_pdbe_chem_comp_rdkit_properties.exactmw 223.084
_pdbe_chem_comp_rdkit_properties.amw 223.228
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 111.214
_pdbe_chem_comp_rdkit_properties.tpsa 86.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.840
_pdbe_chem_comp_rdkit_properties.CrippenMR 56.829
_pdbe_chem_comp_rdkit_properties.chi0v 7.580
_pdbe_chem_comp_rdkit_properties.chi1v 3.764
_pdbe_chem_comp_rdkit_properties.chi2v 1.211
_pdbe_chem_comp_rdkit_properties.chi3v 1.211
_pdbe_chem_comp_rdkit_properties.chi4v 0.628
_pdbe_chem_comp_rdkit_properties.chi0n 20.580
_pdbe_chem_comp_rdkit_properties.chi1n 10.027
_pdbe_chem_comp_rdkit_properties.chi2n 1.211
_pdbe_chem_comp_rdkit_properties.chi3n 1.211
_pdbe_chem_comp_rdkit_properties.chi4n 0.628
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.880
_pdbe_chem_comp_rdkit_properties.kappa1 3.305
_pdbe_chem_comp_rdkit_properties.kappa2 5.870
_pdbe_chem_comp_rdkit_properties.kappa3 4.100
_pdbe_chem_comp_rdkit_properties.Phi 1.212
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4BA UniChem ZINC ZINC000006506101
4BA UniChem eMolecules 36852391
4BA UniChem SureChEMBL SCHEMBL12072934
4BA UniChem PubChem 4469992
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4BA N -1.324 0.028 1.100 ETKDGv3 1
4BA C5C -2.606 -0.496 1.602 ETKDGv3 2
4BA C6C -3.783 -0.296 0.629 ETKDGv3 3
4BA C7C -4.042 1.152 0.350 ETKDGv3 4
4BA O8C -3.581 1.723 -0.833 ETKDGv3 5
4BA O9C -4.649 1.860 1.197 ETKDGv3 6
4BA C1D 0.623 -0.374 -0.289 ETKDGv3 7
4BA C2D 1.601 -1.016 0.371 ETKDGv3 8
4BA C3D 3.014 -0.638 0.166 ETKDGv3 9
4BA C4D 3.338 0.366 -0.669 ETKDGv3 10
4BA C5D 2.252 1.090 -1.381 ETKDGv3 11
4BA C6D 0.973 0.743 -1.198 ETKDGv3 12
4BA C7D -0.820 -0.725 -0.055 ETKDGv3 13
4BA C 4.750 0.752 -0.879 ETKDGv3 14
4BA O 5.040 1.695 -1.663 ETKDGv3 15
4BA OXT 5.773 0.079 -0.214 ETKDGv3 16
4BA H -1.428 1.036 0.838 ETKDGv3 17
4BA H15 -2.505 -1.579 1.838 ETKDGv3 18
4BA H25 -2.843 0.012 2.562 ETKDGv3 19
4BA H16 -3.602 -0.839 -0.322 ETKDGv3 20
4BA H26 -4.696 -0.739 1.082 ETKDGv3 21
4BA HO8 -3.735 2.704 -1.030 ETKDGv3 22
4BA HC2 1.366 -1.817 1.062 ETKDGv3 23
4BA HC3 3.777 -1.185 0.705 ETKDGv3 24
4BA HC5 2.487 1.908 -2.050 ETKDGv3 25
4BA HC6 0.192 1.284 -1.718 ETKDGv3 26
4BA H17 -1.408 -0.477 -0.966 ETKDGv3 27
4BA H27 -0.909 -1.821 0.118 ETKDGv3 28
4BA HXT 6.742 0.338 -0.353 ETKDGv3 29
#