data_4BL
#
_chem_comp.id 4BL
_chem_comp.name "6-methyl-1H-indole-2-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H9 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-10-21
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 175.184
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4BL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KAB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4BL C1 C1 C 0 1 Y N N N N N 33.235 25.773 24.738 -1.573 0.042 0.003 C1 4BL 1
4BL N2 N2 N 0 1 Y N N N N N 33.720 25.637 26.004 -0.681 -1.014 0.004 N2 4BL 2
4BL C3 C3 C 0 1 Y N N N N N 34.223 25.525 23.780 -0.879 1.211 0.002 C3 4BL 3
4BL C4 C4 C 0 1 Y N N N N N 35.022 25.300 25.999 0.599 -0.512 0.002 C4 4BL 4
4BL C5 C5 C 0 1 N N N N N N 31.828 26.141 24.415 -3.037 -0.079 -0.001 C5 4BL 5
4BL C6 C6 C 0 1 Y N N N N N 35.363 25.222 24.577 0.501 0.893 0.001 C6 4BL 6
4BL C7 C7 C 0 1 Y N N N N N 35.990 25.041 26.958 1.856 -1.110 0.001 C7 4BL 7
4BL O8 O8 O 0 1 N N N N N N 31.024 26.342 25.350 -3.612 -1.299 -0.004 O8 4BL 8
4BL C9 C9 C 0 1 Y N N N N N 36.655 24.890 24.195 1.666 1.670 -0.001 C9 4BL 9
4BL O10 O10 O 0 1 N N N N N N 31.487 26.238 23.216 -3.730 0.919 -0.000 O10 4BL 10
4BL C11 C11 C 0 1 Y N N N N N 37.277 24.710 26.542 2.987 -0.324 -0.001 C11 4BL 11
4BL C12 C12 C 0 1 Y N N N N N 37.601 24.637 25.186 2.888 1.061 -0.002 C12 4BL 12
4BL C13 C13 C 0 1 N N N N N N 38.339 24.427 27.572 4.347 -0.975 -0.001 C13 4BL 13
4BL H3 H3 H 0 1 N N N N N N 34.142 25.556 22.704 -1.304 2.204 0.001 H3 4BL 14
4BL H7 H7 H 0 1 N N N N N N 35.750 25.095 28.010 1.944 -2.186 0.002 H7 4BL 15
4BL HO8 HO8 H 0 1 N N N N N N 30.172 26.565 24.993 -4.579 -1.329 -0.007 HO8 4BL 16
4BL H9 H9 H 0 1 N N N N N N 36.922 24.829 23.150 1.599 2.748 -0.003 H9 4BL 17
4BL H12 H12 H 0 1 N N N N N N 38.609 24.378 24.898 3.785 1.662 -0.004 H12 4BL 18
4BL H13 H13 H 0 1 N N N N N N 38.338 23.354 27.815 4.674 -1.133 -1.029 H13 4BL 19
4BL H13A H13A H 0 0 N N N N N N 39.323 24.711 27.171 5.059 -0.328 0.511 H13A 4BL 20
4BL H13B H13B H 0 0 N N N N N N 38.132 25.010 28.482 4.291 -1.934 0.514 H13B 4BL 21
4BL HN2 HN2 H 0 1 N N N N N N 33.176 25.771 26.833 -0.919 -1.954 0.005 HN2 4BL 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4BL C3 C1 DOUB Y N 1
4BL C5 C1 SING N N 2
4BL C1 N2 SING Y N 3
4BL C4 N2 SING Y N 4
4BL C3 C6 SING Y N 5
4BL C3 H3 SING N N 6
4BL C6 C4 SING Y N 7
4BL C4 C7 DOUB Y N 8
4BL O10 C5 DOUB N N 9
4BL C5 O8 SING N N 10
4BL C9 C6 DOUB Y N 11
4BL C11 C7 SING Y N 12
4BL C7 H7 SING N N 13
4BL O8 HO8 SING N N 14
4BL C9 C12 SING Y N 15
4BL C9 H9 SING N N 16
4BL C12 C11 DOUB Y N 17
4BL C11 C13 SING N N 18
4BL C12 H12 SING N N 19
4BL C13 H13 SING N N 20
4BL C13 H13A SING N N 21
4BL C13 H13B SING N N 22
4BL N2 HN2 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4BL SMILES ACDLabs 11.02 O=C(O)c2cc1ccc(cc1n2)C
4BL SMILES_CANONICAL CACTVS 3.352 Cc1ccc2cc([nH]c2c1)C(O)=O
4BL SMILES CACTVS 3.352 Cc1ccc2cc([nH]c2c1)C(O)=O
4BL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1ccc2cc([nH]c2c1)C(=O)O
4BL SMILES "OpenEye OEToolkits" 1.7.0 Cc1ccc2cc([nH]c2c1)C(=O)O
4BL InChI InChI 1.03 InChI=1S/C10H9NO2/c1-6-2-3-7-5-9(10(12)13)11-8(7)4-6/h2-5,11H,1H3,(H,12,13)
4BL InChIKey InChI 1.03 ZKGSVVHFMZASJS-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4BL "SYSTEMATIC NAME" ACDLabs 11.02 "6-methyl-1H-indole-2-carboxylic acid"
4BL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "6-methyl-1H-indole-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4BL 'Create component' 2009-10-21 PDBJ
4BL 'Modify aromatic_flag' 2011-06-04 RCSB
4BL 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4BL C1 C 9.192 0.295 1
4BL N2 N 8.316 -0.912 2
4BL C3 C 8.316 1.503 3
4BL C4 C 6.897 -0.455 4
4BL C5 C 10.692 0.295 5
4BL C6 C 6.897 1.046 6
4BL C7 C 5.598 -1.204 7
4BL O8 O 11.442 1.595 8
4BL C9 C 5.598 1.796 9
4BL O10 O 11.442 -1.004 10
4BL C11 C 4.299 -0.455 11
4BL C12 C 4.299 1.046 12
4BL C13 C 3.000 -1.204 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4BL C3 C1 DOUBLE NONE 1
4BL C5 C1 SINGLE NONE 2
4BL C1 N2 SINGLE NONE 3
4BL C4 N2 SINGLE NONE 4
4BL C3 C6 SINGLE NONE 5
4BL C6 C4 DOUBLE NONE 6
4BL C4 C7 SINGLE NONE 7
4BL O10 C5 DOUBLE NONE 8
4BL C5 O8 SINGLE NONE 9
4BL C9 C6 SINGLE NONE 10
4BL C11 C7 DOUBLE NONE 11
4BL C9 C12 DOUBLE NONE 12
4BL C12 C11 SINGLE NONE 13
4BL C11 C13 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4BL MurckoScaffold S1 scaffold 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
4BL indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
4BL phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4BL pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4BL C1 S1 1
4BL N2 S1 1
4BL C3 S1 1
4BL C4 S1 1
4BL C6 S1 1
4BL C7 S1 1
4BL C9 S1 1
4BL C11 S1 1
4BL C12 S1 1
4BL C4 F1 1
4BL C6 F1 1
4BL C3 F1 1
4BL C1 F1 1
4BL N2 F1 1
4BL C9 F1 1
4BL C12 F1 1
4BL C11 F1 1
4BL C7 F1 1
4BL C4 F2 1
4BL C6 F2 1
4BL C9 F2 1
4BL C12 F2 1
4BL C11 F2 1
4BL C7 F2 1
4BL C1 F3 1
4BL C3 F3 1
4BL C6 F3 1
4BL C4 F3 1
4BL N2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4BL
_pdbe_chem_comp_rdkit_properties.exactmw 175.063
_pdbe_chem_comp_rdkit_properties.amw 175.187
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 87.797
_pdbe_chem_comp_rdkit_properties.tpsa 53.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.637
_pdbe_chem_comp_rdkit_properties.CrippenMR 47.257
_pdbe_chem_comp_rdkit_properties.chi0v 6.264
_pdbe_chem_comp_rdkit_properties.chi1v 3.355
_pdbe_chem_comp_rdkit_properties.chi2v 1.453
_pdbe_chem_comp_rdkit_properties.chi3v 1.453
_pdbe_chem_comp_rdkit_properties.chi4v 0.925
_pdbe_chem_comp_rdkit_properties.chi0n 15.264
_pdbe_chem_comp_rdkit_properties.chi1n 7.711
_pdbe_chem_comp_rdkit_properties.chi2n 1.453
_pdbe_chem_comp_rdkit_properties.chi3n 1.453
_pdbe_chem_comp_rdkit_properties.chi4n 0.925
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.770
_pdbe_chem_comp_rdkit_properties.kappa1 2.608
_pdbe_chem_comp_rdkit_properties.kappa2 2.622
_pdbe_chem_comp_rdkit_properties.kappa3 1.284
_pdbe_chem_comp_rdkit_properties.Phi 0.526
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4BL UniChem ChEMBL CHEMBL596007
4BL UniChem PDBe 4BL
4BL UniChem ZINC ZINC000002582714
4BL UniChem eMolecules 705794
4BL UniChem PubChem 3163396
4BL UniChem Mcule MCULE-8264158205
4BL UniChem ACTor 18474-59-4
4BL UniChem BindingDb 50305666
4BL UniChem 'EPA CompTox Dashboard' DTXSID70390349
4BL UniChem ChemicalBook CB2100412
4BL UniChem SureChEMBL SCHEMBL1144688
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4BL C1 2.188 -0.676 -0.197 ETKDGv3 1
4BL N2 0.995 -1.462 -0.241 ETKDGv3 2
4BL C3 1.912 0.627 -0.287 ETKDGv3 3
4BL C4 -0.035 -0.496 -0.366 ETKDGv3 4
4BL C5 3.536 -1.244 -0.069 ETKDGv3 5
4BL C6 0.462 0.725 -0.396 ETKDGv3 6
4BL C7 -1.484 -0.739 -0.448 ETKDGv3 7
4BL O8 4.649 -0.409 -0.034 ETKDGv3 8
4BL C9 -0.408 1.905 -0.510 ETKDGv3 9
4BL O10 3.687 -2.493 0.008 ETKDGv3 10
4BL C11 -2.307 0.324 -0.572 ETKDGv3 11
4BL C12 -1.737 1.710 -0.591 ETKDGv3 12
4BL C13 -3.793 0.127 -0.620 ETKDGv3 13
4BL H3 2.624 1.443 -0.278 ETKDGv3 14
4BL H7 -1.869 -1.751 -0.407 ETKDGv3 15
4BL HO8 5.583 -0.791 0.055 ETKDGv3 16
4BL H9 0.010 2.903 -0.524 ETKDGv3 17
4BL H12 -2.396 2.565 -0.670 ETKDGv3 18
4BL H13 -4.048 -0.763 -1.234 ETKDGv3 19
4BL H13A -4.180 -0.016 0.410 ETKDGv3 20
4BL H13B -4.290 1.012 -1.071 ETKDGv3 21
4BL HN2 0.900 -2.501 -0.189 ETKDGv3 22
#