data_4EG
#
_chem_comp.id 4EG
_chem_comp.name "methyl (2Z)-3-cyano-3-phenylprop-2-enoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H9 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-09
_chem_comp.pdbx_modified_date 2016-01-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 187.195
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4EG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YNC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4EG CAL C1 C 0 1 N N N N N N -35.694 5.471 1.633 4.619 -0.946 0.214 CAL 4EG 1
4EG OAJ O1 O 0 1 N N N N N N -35.364 4.142 1.244 3.243 -1.327 0.281 OAJ 4EG 2
4EG CAI C2 C 0 1 N N N N N N -35.729 3.900 -0.033 2.328 -0.356 0.084 CAI 4EG 3
4EG OAK O2 O 0 1 N N N N N N -36.164 4.748 -0.813 2.690 0.784 -0.140 OAK 4EG 4
4EG CAH C3 C 0 1 N N N N N N -35.551 2.442 -0.425 0.901 -0.673 0.138 CAH 4EG 5
4EG CAG C4 C 0 1 N N N N N N -35.949 1.939 -1.804 -0.022 0.308 -0.061 CAG 4EG 6
4EG CAM C5 C 0 1 N N N N N N -36.473 2.849 -2.806 0.404 1.649 -0.324 CAM 4EG 7
4EG NAN N1 N 0 1 N N N N N N -36.910 3.578 -3.633 0.741 2.714 -0.533 NAN 4EG 8
4EG CAE C6 C 0 1 Y N N N N N -35.749 0.602 -2.132 -1.464 -0.013 -0.006 CAE 4EG 9
4EG CAD C7 C 0 1 Y N N N N N -36.521 0.008 -3.124 -2.029 -0.871 -0.953 CAD 4EG 10
4EG CAC C8 C 0 1 Y N N N N N -36.305 -1.321 -3.458 -3.375 -1.166 -0.896 CAC 4EG 11
4EG CAB C9 C 0 1 Y N N N N N -35.309 -2.040 -2.811 -4.166 -0.614 0.097 CAB 4EG 12
4EG CAA C10 C 0 1 Y N N N N N -34.533 -1.442 -1.821 -3.613 0.236 1.039 CAA 4EG 13
4EG CAF C11 C 0 1 Y N N N N N -34.753 -0.122 -1.485 -2.267 0.536 0.996 CAF 4EG 14
4EG HAL H1 H 0 1 N N N N N N -35.385 5.636 2.676 5.247 -1.819 0.390 HAL 4EG 15
4EG HAN H2 H 0 1 N N N N N N -35.172 6.185 0.978 4.835 -0.537 -0.773 HAN 4EG 16
4EG HAM H3 H 0 1 N N N N N N -36.780 5.620 1.545 4.825 -0.191 0.973 HAM 4EG 17
4EG HAH H4 H 0 1 N N N N N N -35.133 1.749 0.290 0.580 -1.685 0.336 HAH 4EG 18
4EG HAD H5 H 0 1 N N N N N N -37.285 0.578 -3.632 -1.413 -1.301 -1.729 HAD 4EG 19
4EG HAC H6 H 0 1 N N N N N N -36.909 -1.794 -4.218 -3.813 -1.828 -1.627 HAC 4EG 20
4EG HAB H7 H 0 1 N N N N N N -35.134 -3.072 -3.078 -5.219 -0.849 0.138 HAB 4EG 21
4EG HAA H8 H 0 1 N N N N N N -33.763 -2.009 -1.319 -4.236 0.664 1.811 HAA 4EG 22
4EG HAF H9 H 0 1 N N N N N N -34.153 0.349 -0.721 -1.836 1.196 1.734 HAF 4EG 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4EG NAN CAM TRIP N N 1
4EG CAC CAD DOUB Y N 2
4EG CAC CAB SING Y N 3
4EG CAD CAE SING Y N 4
4EG CAB CAA DOUB Y N 5
4EG CAM CAG SING N N 6
4EG CAE CAG SING N N 7
4EG CAE CAF DOUB Y N 8
4EG CAA CAF SING Y N 9
4EG CAG CAH DOUB N Z 10
4EG OAK CAI DOUB N N 11
4EG CAH CAI SING N N 12
4EG CAI OAJ SING N N 13
4EG OAJ CAL SING N N 14
4EG CAL HAL SING N N 15
4EG CAL HAN SING N N 16
4EG CAL HAM SING N N 17
4EG CAH HAH SING N N 18
4EG CAD HAD SING N N 19
4EG CAC HAC SING N N 20
4EG CAB HAB SING N N 21
4EG CAA HAA SING N N 22
4EG CAF HAF SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4EG SMILES ACDLabs 12.01 "COC(=O)[C@H]=C(C#N)c1ccccc1"
4EG InChI InChI 1.03 InChI=1S/C11H9NO2/c1-14-11(13)7-10(8-12)9-5-3-2-4-6-9/h2-7H,1H3/b10-7+
4EG InChIKey InChI 1.03 GXUWXZSLWMEZET-JXMROGBWSA-N
4EG SMILES_CANONICAL CACTVS 3.385 "COC(=O)\C=C(/C#N)c1ccccc1"
4EG SMILES CACTVS 3.385 "COC(=O)C=C(C#N)c1ccccc1"
4EG SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "COC(=O)/C=C(\C#N)/c1ccccc1"
4EG SMILES "OpenEye OEToolkits" 1.9.2 "COC(=O)C=C(C#N)c1ccccc1"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4EG "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2Z)-3-cyano-3-phenylprop-2-enoate"
4EG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "methyl (Z)-3-cyano-3-phenyl-prop-2-enoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4EG 'Create component' 2015-03-09 EBI
4EG 'Initial release' 2016-01-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4EG CAL C 8.196 4.500 1
4EG OAJ O 8.196 3.000 2
4EG CAI C 6.897 2.250 3
4EG OAK O 5.598 3.000 4
4EG CAH C 6.897 0.750 5
4EG CAG C 5.598 0.000 6
4EG CAM C 4.299 0.750 7
4EG NAN N 3.000 1.500 8
4EG CAE C 5.598 -1.500 9
4EG CAD C 4.299 -2.250 10
4EG CAC C 4.299 -3.750 11
4EG CAB C 5.598 -4.500 12
4EG CAA C 6.897 -3.750 13
4EG CAF C 6.897 -2.250 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4EG NAN CAM TRIPLE NONE 1
4EG CAC CAD SINGLE NONE 2
4EG CAC CAB DOUBLE NONE 3
4EG CAD CAE DOUBLE NONE 4
4EG CAB CAA SINGLE NONE 5
4EG CAM CAG SINGLE ENDUPRIGHT 6
4EG CAE CAG SINGLE ENDDOWNRIGHT 7
4EG CAE CAF SINGLE NONE 8
4EG CAA CAF DOUBLE NONE 9
4EG CAG CAH DOUBLE NONE 10
4EG OAK CAI DOUBLE NONE 11
4EG CAH CAI SINGLE ENDDOWNRIGHT 12
4EG CAI OAJ SINGLE NONE 13
4EG OAJ CAL SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4EG MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4EG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4EG CAE S1 1
4EG CAD S1 1
4EG CAC S1 1
4EG CAB S1 1
4EG CAA S1 1
4EG CAF S1 1
4EG CAE F1 1
4EG CAD F1 1
4EG CAC F1 1
4EG CAB F1 1
4EG CAA F1 1
4EG CAF F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4EG
_pdbe_chem_comp_rdkit_properties.exactmw 187.063
_pdbe_chem_comp_rdkit_properties.amw 187.198
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.091
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.879
_pdbe_chem_comp_rdkit_properties.tpsa 50.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.712
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.782
_pdbe_chem_comp_rdkit_properties.chi0v 6.764
_pdbe_chem_comp_rdkit_properties.chi1v 3.336
_pdbe_chem_comp_rdkit_properties.chi2v 1.182
_pdbe_chem_comp_rdkit_properties.chi3v 1.182
_pdbe_chem_comp_rdkit_properties.chi4v 0.649
_pdbe_chem_comp_rdkit_properties.chi0n 15.764
_pdbe_chem_comp_rdkit_properties.chi1n 7.836
_pdbe_chem_comp_rdkit_properties.chi2n 1.182
_pdbe_chem_comp_rdkit_properties.chi3n 1.182
_pdbe_chem_comp_rdkit_properties.chi4n 0.649
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.080
_pdbe_chem_comp_rdkit_properties.kappa1 3.248
_pdbe_chem_comp_rdkit_properties.kappa2 4.827
_pdbe_chem_comp_rdkit_properties.kappa3 2.458
_pdbe_chem_comp_rdkit_properties.Phi 1.120
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4EG UniChem PDBe 4EG
4EG UniChem ZINC ZINC000034618647
4EG UniChem 'PubChem TPHARMA' 16118588
4EG UniChem PubChem 11052369
4EG UniChem Nikkaji J3.410.974E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4EG CAL 4.627 0.412 0.040 ETKDGv3 1
4EG OAJ 3.209 0.326 -0.020 ETKDGv3 2
4EG CAI 2.443 -0.265 0.991 ETKDGv3 3
4EG OAK 3.011 -0.754 2.005 ETKDGv3 4
4EG CAH 0.968 -0.342 0.900 ETKDGv3 5
4EG CAG 0.209 0.181 -0.086 ETKDGv3 6
4EG CAM 0.792 0.927 -1.180 ETKDGv3 7
4EG NAN 1.254 1.524 -2.058 ETKDGv3 8
4EG CAE -1.269 0.011 -0.059 ETKDGv3 9
4EG CAD -2.085 1.009 -0.454 ETKDGv3 10
4EG CAC -3.552 0.836 -0.426 ETKDGv3 11
4EG CAB -4.084 -0.320 -0.012 ETKDGv3 12
4EG CAA -3.205 -1.426 0.411 ETKDGv3 13
4EG CAF -1.875 -1.274 0.389 ETKDGv3 14
4EG HAL 4.935 1.000 0.930 ETKDGv3 15
4EG HAN 5.068 -0.606 0.091 ETKDGv3 16
4EG HAM 5.000 0.920 -0.873 ETKDGv3 17
4EG HAH 0.475 -0.850 1.720 ETKDGv3 18
4EG HAD -1.684 1.961 -0.782 ETKDGv3 19
4EG HAC -4.196 1.648 -0.738 ETKDGv3 20
4EG HAB -5.159 -0.447 0.009 ETKDGv3 21
4EG HAA -3.639 -2.365 0.731 ETKDGv3 22
4EG HAF -1.245 -2.105 0.680 ETKDGv3 23
#