data_4G5 # _chem_comp.id 4G5 _chem_comp.name "4-[(2-amino-2-oxoethyl)(methyl)carbamoyl]-2-phenyl-1H-imidazole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4G5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XPA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4G5 C10 C10 C 0 1 Y N N N N N 39.011 -17.867 10.252 -3.220 -1.848 -0.154 C10 4G5 1 4G5 C11 C11 C 0 1 Y N N N N N 38.963 -19.259 10.340 -4.454 -2.459 -0.078 C11 4G5 2 4G5 C12 C12 C 0 1 Y N N N N N 38.908 -19.896 11.587 -5.586 -1.709 0.188 C12 4G5 3 4G5 C13 C13 C 0 1 Y N N N N N 38.901 -19.120 12.748 -5.489 -0.343 0.380 C13 4G5 4 4G5 C14 C14 C 0 1 Y N N N N N 38.931 -17.718 12.666 -4.260 0.281 0.306 C14 4G5 5 4G5 C9 C9 C 0 1 Y N N N N N 38.955 -17.092 11.420 -3.115 -0.469 0.038 C9 4G5 6 4G5 C5 C5 C 0 1 Y N N N N N 39.040 -15.700 11.342 -1.795 0.193 -0.042 C5 4G5 7 4G5 N1 N1 N 0 1 Y N N N N N 39.608 -14.995 12.324 -0.654 -0.412 -0.289 N1 4G5 8 4G5 N4 N4 N 0 1 Y N N N N N 38.675 -14.852 10.340 -1.571 1.525 0.121 N4 4G5 9 4G5 C3 C3 C 0 1 Y N N N N N 39.011 -13.604 10.733 -0.222 1.732 -0.030 C3 4G5 10 4G5 C15 C15 C 0 1 N N N N N N 38.802 -12.297 9.931 0.488 3.016 0.063 C15 4G5 11 4G5 O17 O17 O 0 1 N N N N N N 38.533 -12.328 8.711 -0.198 4.149 0.319 O17 4G5 12 4G5 O16 O16 O 0 1 N N N N N N 38.985 -11.215 10.515 1.693 3.058 -0.093 O16 4G5 13 4G5 C2 C2 C 0 1 Y N N N N N 39.614 -13.711 11.993 0.339 0.487 -0.289 C2 4G5 14 4G5 C6 C6 C 0 1 N N N N N N 40.225 -12.680 12.980 1.772 0.206 -0.527 C6 4G5 15 4G5 O8 O8 O 0 1 N N N N N N 39.483 -11.921 13.597 2.567 1.123 -0.600 O8 4G5 16 4G5 N7 N7 N 0 1 N N N N N N 41.565 -12.772 13.215 2.196 -1.066 -0.662 N7 4G5 17 4G5 C22 C22 C 0 1 N N N N N N 42.373 -13.743 12.411 1.230 -2.167 -0.637 C22 4G5 18 4G5 C18 C18 C 0 1 N N N N N N 42.200 -11.907 14.240 3.623 -1.348 -0.835 C18 4G5 19 4G5 C19 C19 C 0 1 N N N N N N 42.660 -12.783 15.470 4.263 -1.545 0.516 C19 4G5 20 4G5 O21 O21 O 0 1 N N N N N N 42.021 -13.766 15.886 3.593 -1.458 1.523 O21 4G5 21 4G5 N20 N20 N 0 1 N N N N N N 43.808 -12.378 16.035 5.580 -1.817 0.604 N20 4G5 22 4G5 H10 H10 H 0 1 N N N N N N 39.091 -17.388 9.287 -2.337 -2.435 -0.357 H10 4G5 23 4G5 H11 H11 H 0 1 N N N N N N 38.968 -19.852 9.437 -4.537 -3.526 -0.226 H11 4G5 24 4G5 H12 H12 H 0 1 N N N N N N 38.871 -20.974 11.649 -6.550 -2.193 0.246 H12 4G5 25 4G5 H13 H13 H 0 1 N N N N N N 38.872 -19.601 13.715 -6.376 0.237 0.586 H13 4G5 26 4G5 H14 H14 H 0 1 N N N N N N 38.935 -17.125 13.568 -4.185 1.348 0.456 H14 4G5 27 4G5 H4 H4 H 0 1 N N N N N N 38.240 -15.106 9.476 -2.240 2.201 0.309 H4 4G5 28 4G5 H17 H17 H 0 1 N N N N N N 38.503 -11.442 8.370 0.312 4.969 0.371 H17 4G5 29 4G5 H221 H221 H 0 0 N N N N N N 42.571 -13.320 11.415 0.801 -2.296 -1.631 H221 4G5 30 4G5 H222 H222 H 0 0 N N N N N N 43.327 -13.938 12.923 1.734 -3.086 -0.336 H222 4G5 31 4G5 H223 H223 H 0 0 N N N N N N 41.814 -14.685 12.304 0.437 -1.938 0.074 H223 4G5 32 4G5 H181 H181 H 0 0 N N N N N N 43.076 -11.406 13.802 3.746 -2.253 -1.430 H181 4G5 33 4G5 H182 H182 H 0 0 N N N N N N 41.473 -11.155 14.581 4.100 -0.511 -1.344 H182 4G5 34 4G5 H201 H201 H 0 0 N N N N N N 44.153 -11.576 15.548 6.116 -1.886 -0.202 H201 4G5 35 4G5 H202 H202 H 0 0 N N N N N N 44.250 -12.811 16.821 5.992 -1.943 1.473 H202 4G5 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4G5 C10 C11 SING Y N 1 4G5 C10 C9 DOUB Y N 2 4G5 C11 C12 DOUB Y N 3 4G5 C12 C13 SING Y N 4 4G5 C13 C14 DOUB Y N 5 4G5 C14 C9 SING Y N 6 4G5 C9 C5 SING Y N 7 4G5 C5 N1 DOUB Y N 8 4G5 C5 N4 SING Y N 9 4G5 N1 C2 SING Y N 10 4G5 N4 C3 SING Y N 11 4G5 C3 C15 SING N N 12 4G5 C3 C2 DOUB Y N 13 4G5 C15 O17 SING N N 14 4G5 C15 O16 DOUB N N 15 4G5 C2 C6 SING N N 16 4G5 C6 O8 DOUB N N 17 4G5 C6 N7 SING N N 18 4G5 N7 C22 SING N N 19 4G5 N7 C18 SING N N 20 4G5 C18 C19 SING N N 21 4G5 C19 O21 DOUB N N 22 4G5 C19 N20 SING N N 23 4G5 C10 H10 SING N N 24 4G5 C11 H11 SING N N 25 4G5 C12 H12 SING N N 26 4G5 C13 H13 SING N N 27 4G5 C14 H14 SING N N 28 4G5 N4 H4 SING N N 29 4G5 O17 H17 SING N N 30 4G5 C22 H221 SING N N 31 4G5 C22 H222 SING N N 32 4G5 C22 H223 SING N N 33 4G5 C18 H181 SING N N 34 4G5 C18 H182 SING N N 35 4G5 N20 H201 SING N N 36 4G5 N20 H202 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4G5 SMILES ACDLabs 10.04 O=C(N)CN(C(=O)c2nc(c1ccccc1)nc2C(=O)O)C 4G5 SMILES_CANONICAL CACTVS 3.352 CN(CC(N)=O)C(=O)c1nc([nH]c1C(O)=O)c2ccccc2 4G5 SMILES CACTVS 3.352 CN(CC(N)=O)C(=O)c1nc([nH]c1C(O)=O)c2ccccc2 4G5 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 CN(CC(=O)N)C(=O)c1c([nH]c(n1)c2ccccc2)C(=O)O 4G5 SMILES "OpenEye OEToolkits" 1.6.1 CN(CC(=O)N)C(=O)c1c([nH]c(n1)c2ccccc2)C(=O)O 4G5 InChI InChI 1.03 InChI=1S/C14H14N4O4/c1-18(7-9(15)19)13(20)10-11(14(21)22)17-12(16-10)8-5-3-2-4-6-8/h2-6H,7H2,1H3,(H2,15,19)(H,16,17)(H,21,22) 4G5 InChIKey InChI 1.03 IKAWXRIWROBKBL-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4G5 "SYSTEMATIC NAME" ACDLabs 10.04 "4-[(2-amino-2-oxoethyl)(methyl)carbamoyl]-2-phenyl-1H-imidazole-5-carboxylic acid" 4G5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "5-[(2-amino-2-oxo-ethyl)-methyl-carbamoyl]-2-phenyl-3H-imidazole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4G5 'Create component' 2010-08-25 EBI 4G5 'Modify aromatic_flag' 2011-06-04 RCSB 4G5 'Modify descriptor' 2011-06-04 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal 4G5 C10 C 9.005 -3.242 1 4G5 C11 C 9.005 -4.742 2 4G5 C12 C 10.303 -5.492 3 4G5 C13 C 11.602 -4.742 4 4G5 C14 C 11.602 -3.242 5 4G5 C9 C 10.303 -2.492 6 4G5 C5 C 10.303 -0.992 7 4G5 N1 N 9.090 -0.111 8 4G5 N4 N 11.517 -0.111 9 4G5 C3 C 11.053 1.316 10 4G5 C15 C 11.935 2.529 11 4G5 O17 O 13.427 2.373 12 4G5 O16 O 11.325 3.900 13 4G5 C2 C 9.553 1.316 14 4G5 C6 C 8.672 2.529 15 4G5 O8 O 9.282 3.900 16 4G5 N7 N 7.180 2.373 17 4G5 C22 C 6.570 1.002 18 4G5 C18 C 6.298 3.586 19 4G5 C19 C 4.807 3.429 20 4G5 O21 O 4.196 2.059 21 4G5 N20 N 3.925 4.643 22 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal 4G5 C10 C11 DOUBLE NONE 1 4G5 C10 C9 SINGLE NONE 2 4G5 C11 C12 SINGLE NONE 3 4G5 C12 C13 DOUBLE NONE 4 4G5 C13 C14 SINGLE NONE 5 4G5 C14 C9 DOUBLE NONE 6 4G5 C9 C5 SINGLE NONE 7 4G5 C5 N1 DOUBLE NONE 8 4G5 C5 N4 SINGLE NONE 9 4G5 N1 C2 SINGLE NONE 10 4G5 N4 C3 SINGLE NONE 11 4G5 C3 C15 SINGLE NONE 12 4G5 C3 C2 DOUBLE NONE 13 4G5 C15 O17 SINGLE NONE 14 4G5 C15 O16 DOUBLE NONE 15 4G5 C2 C6 SINGLE NONE 16 4G5 C6 O8 DOUBLE NONE 17 4G5 C6 N7 SINGLE NONE 18 4G5 N7 C22 SINGLE NONE 19 4G5 N7 C18 SINGLE NONE 20 4G5 C18 C19 SINGLE NONE 21 4G5 C19 O21 DOUBLE NONE 22 4G5 C19 N20 SINGLE NONE 23 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys 4G5 MurckoScaffold S1 scaffold 'c1ccc(-c2ncc[nH]2)cc1' InChI=1S/C9H8N2/c1-2-4-8(5-3-1)9-10-6-7-11-9/h1-7H,(H,10,11) ZCUJYXPAKHMBAZ-UHFFFAOYSA-N 4G5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N 4G5 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N 4G5 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N 4G5 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal 4G5 C10 S1 1 4G5 C11 S1 1 4G5 C12 S1 1 4G5 C13 S1 1 4G5 C14 S1 1 4G5 C9 S1 1 4G5 C5 S1 1 4G5 N1 S1 1 4G5 N4 S1 1 4G5 C3 S1 1 4G5 C2 S1 1 4G5 N7 F1 1 4G5 C6 F1 1 4G5 O8 F1 1 4G5 C2 F1 1 4G5 N20 F1 2 4G5 C19 F1 2 4G5 O21 F1 2 4G5 C18 F1 2 4G5 C3 F2 1 4G5 C2 F2 1 4G5 N1 F2 1 4G5 C5 F2 1 4G5 N4 F2 1 4G5 O21 F3 1 4G5 C19 F3 1 4G5 C18 F3 1 4G5 N7 F3 1 4G5 C10 F4 1 4G5 C11 F4 1 4G5 C12 F4 1 4G5 C13 F4 1 4G5 C14 F4 1 4G5 C9 F4 1 # _pdbe_chem_comp_rdkit_properties.comp_id 4G5 _pdbe_chem_comp_rdkit_properties.exactmw 302.102 _pdbe_chem_comp_rdkit_properties.amw 302.290 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 8 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 4 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6 _pdbe_chem_comp_rdkit_properties.NumHBD 3 _pdbe_chem_comp_rdkit_properties.NumHBA 5 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22 _pdbe_chem_comp_rdkit_properties.NumAtoms 36 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 2 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143 _pdbe_chem_comp_rdkit_properties.NumRings 2 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 2 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 145.051 _pdbe_chem_comp_rdkit_properties.tpsa 129.380 _pdbe_chem_comp_rdkit_properties.CrippenClogP -0.157 _pdbe_chem_comp_rdkit_properties.CrippenMR 75.284 _pdbe_chem_comp_rdkit_properties.chi0v 10.422 _pdbe_chem_comp_rdkit_properties.chi1v 5.355 _pdbe_chem_comp_rdkit_properties.chi2v 2.190 _pdbe_chem_comp_rdkit_properties.chi3v 2.190 _pdbe_chem_comp_rdkit_properties.chi4v 1.360 _pdbe_chem_comp_rdkit_properties.chi0n 24.422 _pdbe_chem_comp_rdkit_properties.chi1n 12.105 _pdbe_chem_comp_rdkit_properties.chi2n 2.190 _pdbe_chem_comp_rdkit_properties.chi3n 2.190 _pdbe_chem_comp_rdkit_properties.chi4n 1.360 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.160 _pdbe_chem_comp_rdkit_properties.kappa1 5.236 _pdbe_chem_comp_rdkit_properties.kappa2 6.083 _pdbe_chem_comp_rdkit_properties.kappa3 3.113 _pdbe_chem_comp_rdkit_properties.Phi 1.448 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id 4G5 UniChem ChEMBL CHEMBL1230285 4G5 UniChem PDBe 4G5 4G5 UniChem ZINC ZINC000058626952 4G5 UniChem SureChEMBL SCHEMBL22479971 4G5 UniChem PubChem 49835940 4G5 UniChem BindingDb 50329872 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 4G5 C10 3.159 0.694 -1.680 ETKDGv3 1 4G5 C11 4.295 1.114 -2.250 ETKDGv3 2 4G5 C12 5.408 1.601 -1.413 ETKDGv3 3 4G5 C13 5.282 1.622 -0.082 ETKDGv3 4 4G5 C14 4.030 1.159 0.554 ETKDGv3 5 4G5 C9 3.006 0.714 -0.199 ETKDGv3 6 4G5 C5 1.741 0.243 0.414 ETKDGv3 7 4G5 N1 0.789 -0.297 -0.279 ETKDGv3 8 4G5 N4 1.428 0.334 1.802 ETKDGv3 9 4G5 C3 0.124 -0.224 1.876 ETKDGv3 10 4G5 C15 -0.661 -0.274 3.124 ETKDGv3 11 4G5 O17 -2.031 -0.512 3.099 ETKDGv3 12 4G5 O16 -0.088 -0.061 4.225 ETKDGv3 13 4G5 C2 -0.249 -0.598 0.652 ETKDGv3 14 4G5 C6 -1.489 -1.305 0.271 ETKDGv3 15 4G5 O8 -1.905 -2.237 1.012 ETKDGv3 16 4G5 N7 -2.207 -0.980 -0.942 ETKDGv3 17 4G5 C22 -1.852 0.205 -1.731 ETKDGv3 18 4G5 C18 -3.371 -1.785 -1.338 ETKDGv3 19 4G5 C19 -4.570 -1.400 -0.525 ETKDGv3 20 4G5 O21 -4.925 -2.118 0.448 ETKDGv3 21 4G5 N20 -5.294 -0.207 -0.826 ETKDGv3 22 4G5 H10 2.352 0.342 -2.309 ETKDGv3 23 4G5 H11 4.400 1.099 -3.327 ETKDGv3 24 4G5 H12 6.324 1.940 -1.878 ETKDGv3 25 4G5 H13 6.098 1.978 0.534 ETKDGv3 26 4G5 H14 3.972 1.181 1.633 ETKDGv3 27 4G5 H4 1.967 0.786 2.572 ETKDGv3 28 4G5 H17 -2.571 -0.533 3.956 ETKDGv3 29 4G5 H221 -1.774 1.093 -1.068 ETKDGv3 30 4G5 H222 -2.620 0.426 -2.502 ETKDGv3 31 4G5 H223 -0.887 0.037 -2.250 ETKDGv3 32 4G5 H181 -3.602 -1.641 -2.416 ETKDGv3 33 4G5 H182 -3.147 -2.867 -1.209 ETKDGv3 34 4G5 H201 -5.011 0.401 -1.625 ETKDGv3 35 4G5 H202 -6.119 0.068 -0.248 ETKDGv3 36 #