data_4K3
#
_chem_comp.id 4K3
_chem_comp.name N-phenyl-3-sulfanylpropanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H11 N O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-25
_chem_comp.pdbx_modified_date 2015-09-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 181.255
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4K3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YV2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4K3 C12 C1 C 0 1 Y N N N N N 11.204 7.594 4.911 -4.318 0.501 0.079 C12 4K3 1
4K3 C10 C2 C 0 1 Y N N N N N 11.595 8.844 5.349 -3.299 1.367 -0.273 C10 4K3 2
4K3 C11 C3 C 0 1 Y N N N N N 11.624 6.461 5.602 -4.045 -0.835 0.308 C11 4K3 3
4K3 C9 C4 C 0 1 Y N N N N N 12.407 8.921 6.468 -2.005 0.901 -0.395 C9 4K3 4
4K3 C8 C5 C 0 1 Y N N N N N 12.439 6.539 6.717 -2.753 -1.308 0.187 C8 4K3 5
4K3 C6 C6 C 0 1 Y N N N N N 12.836 7.785 7.150 -1.727 -0.440 -0.165 C6 4K3 6
4K3 C3 C7 C 0 1 N N N N N N 14.938 7.934 10.109 2.033 -0.590 -0.211 C3 4K3 7
4K3 C5 C8 C 0 1 N N N N N N 15.553 7.385 11.167 3.015 0.493 0.240 C5 4K3 8
4K3 C2 C9 C 0 1 N N N N N N 14.506 7.134 8.940 0.622 -0.121 0.034 C2 4K3 9
4K3 N1 N1 N 0 1 N N N N N N 13.643 7.975 8.283 -0.418 -0.916 -0.289 N1 4K3 10
4K3 O7 O1 O 0 1 N N N N N N 14.872 5.990 8.679 0.421 0.971 0.521 O7 4K3 11
4K3 S4 S1 S 0 1 N N N N N N 16.051 5.743 11.459 4.714 -0.070 -0.055 S4 4K3 12
4K3 H1 H1 H 0 1 N N N N N N 10.576 7.496 4.038 -5.328 0.869 0.178 H1 4K3 13
4K3 H2 H2 H 0 1 N N N N N N 11.276 9.737 4.833 -3.516 2.410 -0.451 H2 4K3 14
4K3 H3 H3 H 0 1 N N N N N N 11.303 5.489 5.256 -4.843 -1.510 0.582 H3 4K3 15
4K3 H4 H4 H 0 1 N N N N N N 12.717 9.893 6.823 -1.210 1.578 -0.670 H4 4K3 16
4K3 H5 H5 H 0 1 N N N N N N 12.756 5.646 7.235 -2.540 -2.352 0.367 H5 4K3 17
4K3 H6 H6 H 0 1 N N N N N N 15.625 8.700 9.719 2.172 -0.785 -1.275 H6 4K3 18
4K3 H7 H7 H 0 1 N N N N N N 16.482 7.966 11.266 2.832 1.408 -0.324 H7 4K3 19
4K3 H8 H8 H 0 1 N N N N N N 13.577 8.889 8.684 -0.257 -1.819 -0.608 H8 4K3 20
4K3 H9 H9 H 0 1 N N N N N N 16.584 5.829 12.641 5.456 0.964 0.382 H9 4K3 21
4K3 H10 H10 H 0 1 N N N N N N 14.031 8.419 10.500 2.216 -1.504 0.353 H10 4K3 22
4K3 H11 H11 H 0 1 N N N N N N 14.886 7.614 12.011 2.877 0.689 1.303 H11 4K3 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4K3 C12 C10 DOUB Y N 1
4K3 C12 C11 SING Y N 2
4K3 C10 C9 SING Y N 3
4K3 C11 C8 DOUB Y N 4
4K3 C9 C6 DOUB Y N 5
4K3 C8 C6 SING Y N 6
4K3 C6 N1 SING N N 7
4K3 N1 C2 SING N N 8
4K3 O7 C2 DOUB N N 9
4K3 C2 C3 SING N N 10
4K3 C3 C5 SING N N 11
4K3 C5 S4 SING N N 12
4K3 C12 H1 SING N N 13
4K3 C10 H2 SING N N 14
4K3 C11 H3 SING N N 15
4K3 C9 H4 SING N N 16
4K3 C8 H5 SING N N 17
4K3 C3 H6 SING N N 18
4K3 C5 H7 SING N N 19
4K3 N1 H8 SING N N 20
4K3 S4 H9 SING N N 21
4K3 C3 H10 SING N N 22
4K3 C5 H11 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4K3 SMILES ACDLabs 12.01 c1ccc(cc1)NC(CCS)=O
4K3 InChI InChI 1.03 InChI=1S/C9H11NOS/c11-9(6-7-12)10-8-4-2-1-3-5-8/h1-5,12H,6-7H2,(H,10,11)
4K3 InChIKey InChI 1.03 YSPHRFZMBKXSAX-UHFFFAOYSA-N
4K3 SMILES_CANONICAL CACTVS 3.385 SCCC(=O)Nc1ccccc1
4K3 SMILES CACTVS 3.385 SCCC(=O)Nc1ccccc1
4K3 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)NC(=O)CCS
4K3 SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)NC(=O)CCS
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4K3 "SYSTEMATIC NAME" ACDLabs 12.01 N-phenyl-3-sulfanylpropanamide
4K3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N-phenyl-3-sulfanyl-propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4K3 'Create component' 2015-03-25 RCSB
4K3 'Initial release' 2015-09-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4K3 C12 C 4.299 -4.732 1
4K3 C10 C 3.000 -3.982 2
4K3 C11 C 5.598 -3.982 3
4K3 C9 C 3.000 -2.482 4
4K3 C8 C 5.598 -2.482 5
4K3 C6 C 4.299 -1.732 6
4K3 C3 C 5.598 2.018 7
4K3 C5 C 6.897 2.768 8
4K3 C2 C 5.598 0.517 9
4K3 N1 N 4.299 -0.233 10
4K3 O7 O 6.897 -0.233 11
4K3 S4 S 6.897 4.268 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4K3 C12 C10 DOUBLE NONE 1
4K3 C12 C11 SINGLE NONE 2
4K3 C10 C9 SINGLE NONE 3
4K3 C11 C8 DOUBLE NONE 4
4K3 C9 C6 DOUBLE NONE 5
4K3 C8 C6 SINGLE NONE 6
4K3 C6 N1 SINGLE NONE 7
4K3 N1 C2 SINGLE NONE 8
4K3 O7 C2 DOUBLE NONE 9
4K3 C2 C3 SINGLE NONE 10
4K3 C3 C5 SINGLE NONE 11
4K3 C5 S4 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4K3 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4K3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
4K3 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4K3 C12 S1 1
4K3 C10 S1 1
4K3 C11 S1 1
4K3 C9 S1 1
4K3 C8 S1 1
4K3 C6 S1 1
4K3 N1 F1 1
4K3 C2 F1 1
4K3 O7 F1 1
4K3 C3 F1 1
4K3 C12 F2 1
4K3 C10 F2 1
4K3 C9 F2 1
4K3 C6 F2 1
4K3 C8 F2 1
4K3 C11 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4K3
_pdbe_chem_comp_rdkit_properties.exactmw 181.056
_pdbe_chem_comp_rdkit_properties.amw 181.260
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 92.586
_pdbe_chem_comp_rdkit_properties.tpsa 29.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.564
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.718
_pdbe_chem_comp_rdkit_properties.chi0v 6.580
_pdbe_chem_comp_rdkit_properties.chi1v 3.264
_pdbe_chem_comp_rdkit_properties.chi2v 0.960
_pdbe_chem_comp_rdkit_properties.chi3v 0.960
_pdbe_chem_comp_rdkit_properties.chi4v 0.560
_pdbe_chem_comp_rdkit_properties.chi0n 16.764
_pdbe_chem_comp_rdkit_properties.chi1n 8.211
_pdbe_chem_comp_rdkit_properties.chi2n 0.858
_pdbe_chem_comp_rdkit_properties.chi3n 0.858
_pdbe_chem_comp_rdkit_properties.chi4n 0.472
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.960
_pdbe_chem_comp_rdkit_properties.kappa1 2.291
_pdbe_chem_comp_rdkit_properties.kappa2 4.825
_pdbe_chem_comp_rdkit_properties.kappa3 2.964
_pdbe_chem_comp_rdkit_properties.Phi 0.921
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4K3 UniChem PDBe 4K3
4K3 UniChem ZINC ZINC000005299170
4K3 UniChem SureChEMBL SCHEMBL4277957
4K3 UniChem 'PubChem TPHARMA' 16496273
4K3 UniChem PubChem 82464
4K3 UniChem ACTor 10220-66-3
4K3 UniChem Nikkaji J227.118D
4K3 UniChem 'EPA CompTox Dashboard' DTXSID40144735
4K3 UniChem Mcule MCULE-7731276087
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4K3 C12 3.842 -0.691 -0.228 ETKDGv3 1
4K3 C10 3.339 0.503 -0.562 ETKDGv3 2
4K3 C11 2.965 -1.721 0.364 ETKDGv3 3
4K3 C9 1.906 0.792 -0.344 ETKDGv3 4
4K3 C8 1.665 -1.464 0.559 ETKDGv3 5
4K3 C6 1.094 -0.151 0.172 ETKDGv3 6
4K3 C3 -2.539 1.242 0.014 ETKDGv3 7
4K3 C5 -3.563 0.326 -0.661 ETKDGv3 8
4K3 C2 -1.138 0.914 -0.415 ETKDGv3 9
4K3 N1 -0.297 0.107 0.427 ETKDGv3 10
4K3 O7 -0.735 1.301 -1.545 ETKDGv3 11
4K3 S4 -3.399 -1.400 -0.098 ETKDGv3 12
4K3 H1 4.892 -0.903 -0.384 ETKDGv3 13
4K3 H2 3.982 1.262 -0.988 ETKDGv3 14
4K3 H3 3.376 -2.682 0.643 ETKDGv3 15
4K3 H4 1.536 1.781 -0.580 ETKDGv3 16
4K3 H5 1.028 -2.223 0.994 ETKDGv3 17
4K3 H6 -2.761 2.295 -0.263 ETKDGv3 18
4K3 H7 -3.440 0.363 -1.765 ETKDGv3 19
4K3 H8 -0.748 -0.408 1.216 ETKDGv3 20
4K3 H9 -3.786 -1.091 1.220 ETKDGv3 21
4K3 H10 -2.631 1.165 1.119 ETKDGv3 22
4K3 H11 -4.587 0.681 -0.418 ETKDGv3 23
#