data_4M4
#
_chem_comp.id 4M4
_chem_comp.name 2-Methoxy-4-vinylphenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H10 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "4-vinyl guaiacol"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-04-15
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 150.174
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4M4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ZAA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4M4 C3 C1 C 0 1 Y N N N N N 20.223 8.506 28.514 -1.023 -1.158 0.015 C3 4M4 1
4M4 C2 C2 C 0 1 Y N N N N N 20.387 9.632 29.299 -1.020 0.234 0.007 C2 4M4 2
4M4 C1 C3 C 0 1 N N N N N N 21.175 10.652 31.386 -2.118 2.344 0.001 C1 4M4 3
4M4 C5 C4 C 0 1 Y N N N N N 19.176 9.845 26.781 1.375 -1.176 0.011 C5 4M4 4
4M4 C4 C5 C 0 1 Y N N N N N 19.545 8.645 27.266 0.176 -1.857 0.020 C4 4M4 5
4M4 C6 C6 C 0 1 Y N N N N N 19.350 10.939 27.528 1.385 0.220 -0.003 C6 4M4 6
4M4 O1 O1 O 0 1 N N N N N N 21.037 9.486 30.562 -2.196 0.917 0.009 O1 4M4 7
4M4 C7 C7 C 0 1 Y N N N N N 19.997 10.854 28.779 0.179 0.923 -0.002 C7 4M4 8
4M4 O8 O2 O 0 1 N N N N N N 20.613 7.288 29.044 -2.202 -1.834 0.024 O8 4M4 9
4M4 C9 C8 C 0 1 N N N N N N 18.883 12.139 26.975 2.669 0.951 -0.013 C9 4M4 10
4M4 C10 C9 C 0 1 N N N N N N 18.915 13.324 27.533 3.813 0.282 -0.009 C10 4M4 11
4M4 H1 H1 H 0 1 N N N N N N 21.692 10.383 32.319 -1.581 2.684 0.886 H1 4M4 12
4M4 H2 H2 H 0 1 N N N N N N 21.760 11.413 30.849 -1.590 2.673 -0.894 H2 4M4 13
4M4 H3 H3 H 0 1 N N N N N N 20.179 11.054 31.622 -3.125 2.762 0.003 H3 4M4 14
4M4 H4 H4 H 0 1 N N N N N N 18.742 9.923 25.795 2.306 -1.722 0.014 H4 4M4 15
4M4 H5 H5 H 0 1 N N N N N N 19.321 7.758 26.692 0.169 -2.937 0.031 H5 4M4 16
4M4 H6 H6 H 0 1 N N N N N N 20.191 11.757 29.340 0.183 2.003 -0.012 H6 4M4 17
4M4 H7 H7 H 0 1 N N N N N N 21.045 7.429 29.878 -2.547 -2.035 -0.856 H7 4M4 18
4M4 H8 H8 H 0 1 N N N N N N 18.452 12.081 25.986 2.675 2.031 -0.023 H8 4M4 19
4M4 H9 H9 H 0 1 N N N N N N 18.522 14.180 27.005 4.752 0.816 -0.016 H9 4M4 20
4M4 H10 H10 H 0 1 N N N N N N 19.334 13.444 28.521 3.807 -0.798 0.002 H10 4M4 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4M4 C5 C4 DOUB Y N 1
4M4 C5 C6 SING Y N 2
4M4 C9 C6 SING N N 3
4M4 C9 C10 DOUB N N 4
4M4 C4 C3 SING Y N 5
4M4 C6 C7 DOUB Y N 6
4M4 C3 O8 SING N N 7
4M4 C3 C2 DOUB Y N 8
4M4 C7 C2 SING Y N 9
4M4 C2 O1 SING N N 10
4M4 O1 C1 SING N N 11
4M4 C1 H1 SING N N 12
4M4 C1 H2 SING N N 13
4M4 C1 H3 SING N N 14
4M4 C5 H4 SING N N 15
4M4 C4 H5 SING N N 16
4M4 C7 H6 SING N N 17
4M4 O8 H7 SING N N 18
4M4 C9 H8 SING N N 19
4M4 C10 H9 SING N N 20
4M4 C10 H10 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4M4 SMILES ACDLabs 12.01 c1(O)c(OC)cc(cc1)\C=C
4M4 InChI InChI 1.03 InChI=1S/C9H10O2/c1-3-7-4-5-8(10)9(6-7)11-2/h3-6,10H,1H2,2H3
4M4 InChIKey InChI 1.03 YOMSJEATGXXYPX-UHFFFAOYSA-N
4M4 SMILES_CANONICAL CACTVS 3.385 COc1cc(C=C)ccc1O
4M4 SMILES CACTVS 3.385 COc1cc(C=C)ccc1O
4M4 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 COc1cc(ccc1O)C=C
4M4 SMILES "OpenEye OEToolkits" 1.9.2 COc1cc(ccc1O)C=C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4M4 "SYSTEMATIC NAME" ACDLabs 12.01 4-ethenyl-2-methoxyphenol
4M4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 4-ethenyl-2-methoxy-phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4M4 'Create component' 2015-04-15 EBI
4M4 'Initial release' 2015-06-17 RCSB
4M4 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 4M4
_pdbx_chem_comp_synonyms.name "4-vinyl guaiacol"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 4M4
_pdbe_chem_comp_drugbank_details.drugbank_id DB03514
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-Vinylguaiacol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 7786-61-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
4M4 '4-vinyl guaiacol' wwPDB ?
4M4 2-(4-hydroxy-3-methoxyphenyl)ethene DrugBank ?
4M4 2-methoxy-4-vinylphenol DrugBank ?
4M4 2M4VP DrugBank ?
4M4 4-ethenyl-2-methoxyphenol DrugBank ?
4M4 4-hydroxy-3-methoxyphenylethene DrugBank ?
4M4 4-hydroxy-3-methoxystyrene DrugBank ?
4M4 4-hydroxy-3-methoxyvinylbenzene DrugBank ?
4M4 4-vinyl-2-methoxyphenol DrugBank ?
4M4 4-vinylguaiacol DrugBank ?
4M4 o-methoxy-p-vinylphenol DrugBank ?
4M4 p-vinylguaiacol DrugBank ?
4M4 para-vinylguaiacol DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 4M4
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03514
_pdbe_chem_comp_drugbank_classification.parent Methoxyphenols
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Phenols
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as methoxyphenols. These are compounds containing a methoxy group attached to the benzene ring of a phenol moiety.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4M4 C3 C 5.104 0.375 1
4M4 C2 C 6.404 1.125 2
4M4 C1 C 7.702 3.375 3
4M4 C5 C 6.404 -1.875 4
4M4 C4 C 5.104 -1.125 5
4M4 C6 C 7.702 -1.125 6
4M4 O1 O 6.404 2.625 7
4M4 C7 C 7.702 0.375 8
4M4 O8 O 3.805 1.125 9
4M4 C9 C 9.002 -1.875 10
4M4 C10 C 9.002 -3.375 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4M4 C5 C4 SINGLE NONE 1
4M4 C5 C6 DOUBLE NONE 2
4M4 C9 C6 SINGLE NONE 3
4M4 C9 C10 DOUBLE NONE 4
4M4 C4 C3 DOUBLE NONE 5
4M4 C6 C7 SINGLE NONE 6
4M4 C3 O8 SINGLE NONE 7
4M4 C3 C2 SINGLE NONE 8
4M4 C7 C2 DOUBLE NONE 9
4M4 C2 O1 SINGLE NONE 10
4M4 O1 C1 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4M4 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4M4 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4M4 C3 S1 1
4M4 C2 S1 1
4M4 C5 S1 1
4M4 C4 S1 1
4M4 C6 S1 1
4M4 C7 S1 1
4M4 C3 F1 1
4M4 C4 F1 1
4M4 C5 F1 1
4M4 C6 F1 1
4M4 C7 F1 1
4M4 C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4M4
_pdbe_chem_comp_rdkit_properties.exactmw 150.068
_pdbe_chem_comp_rdkit_properties.amw 150.177
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.111
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 79.881
_pdbe_chem_comp_rdkit_properties.tpsa 29.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.064
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.264
_pdbe_chem_comp_rdkit_properties.chi0v 5.316
_pdbe_chem_comp_rdkit_properties.chi1v 2.612
_pdbe_chem_comp_rdkit_properties.chi2v 0.973
_pdbe_chem_comp_rdkit_properties.chi3v 0.973
_pdbe_chem_comp_rdkit_properties.chi4v 0.512
_pdbe_chem_comp_rdkit_properties.chi0n 15.316
_pdbe_chem_comp_rdkit_properties.chi1n 7.521
_pdbe_chem_comp_rdkit_properties.chi2n 0.973
_pdbe_chem_comp_rdkit_properties.chi3n 0.973
_pdbe_chem_comp_rdkit_properties.chi4n 0.512
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.440
_pdbe_chem_comp_rdkit_properties.kappa1 1.831
_pdbe_chem_comp_rdkit_properties.kappa2 3.101
_pdbe_chem_comp_rdkit_properties.kappa3 1.521
_pdbe_chem_comp_rdkit_properties.Phi 0.516
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4M4 UniChem ChEMBL CHEMBL1232595
4M4 UniChem DrugBank DB03514
4M4 UniChem PDBe 4M4
4M4 UniChem 'KEGG LIGAND' C17883
4M4 UniChem ChEBI 42438
4M4 UniChem ZINC ZINC000001849800
4M4 UniChem eMolecules 595717
4M4 UniChem fdasrs DA069CTH0O
4M4 UniChem SureChEMBL SCHEMBL54199
4M4 UniChem HMDB HMDB0013744
4M4 UniChem NMRShiftDB 60019003
4M4 UniChem ACTor 31853-85-7
4M4 UniChem ACTor 7786-61-0
4M4 UniChem MetaboLights MTBLC42438
4M4 UniChem BRENDA 205978
4M4 UniChem BRENDA 233380
4M4 UniChem Rhea 42438
4M4 UniChem ChemicalBook CB8172282
4M4 UniChem MedChemExpress HY-W019940
4M4 UniChem 'Probes And Drugs' PD006849
4M4 UniChem 'EPA CompTox Dashboard' DTXSID7052529
4M4 UniChem 'PubChem TPHARMA' 15146844
4M4 UniChem PubChem 332
4M4 UniChem Mcule MCULE-4834642824
4M4 UniChem Nikkaji J134.783G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4M4 C3 0.339 -1.061 1.580 ETKDGv3 1
4M4 C2 -0.685 -0.932 0.520 ETKDGv3 2
4M4 C1 -2.843 -1.817 -0.401 ETKDGv3 3
4M4 C5 1.548 0.804 0.561 ETKDGv3 4
4M4 C4 1.396 -0.236 1.597 ETKDGv3 5
4M4 C6 0.633 0.927 -0.421 ETKDGv3 6
4M4 O1 -1.778 -1.814 0.545 ETKDGv3 7
4M4 C7 -0.541 0.018 -0.427 ETKDGv3 8
4M4 O8 0.192 -2.045 2.558 ETKDGv3 9
4M4 C9 0.722 1.960 -1.483 ETKDGv3 10
4M4 C10 1.837 2.618 -1.805 ETKDGv3 11
4M4 H1 -3.563 -2.618 -0.134 ETKDGv3 12
4M4 H2 -3.374 -0.842 -0.382 ETKDGv3 13
4M4 H3 -2.449 -2.018 -1.420 ETKDGv3 14
4M4 H4 2.398 1.467 0.635 ETKDGv3 15
4M4 H5 2.146 -0.323 2.373 ETKDGv3 16
4M4 H6 -1.277 0.130 -1.212 ETKDGv3 17
4M4 H7 0.870 -2.166 3.301 ETKDGv3 18
4M4 H8 -0.169 2.169 -2.064 ETKDGv3 19
4M4 H9 1.815 3.346 -2.606 ETKDGv3 20
4M4 H10 2.783 2.434 -1.316 ETKDGv3 21
#