data_4PF
#
_chem_comp.id 4PF
_chem_comp.name (2R)-1-[(2R)-2-(2-methoxyethoxy)propoxy]propan-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H21 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-05-01
_chem_comp.pdbx_modified_date 2015-07-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 191.268
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4PF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ZL4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4PF C1 C1 C 0 1 N N N N N N 3.388 68.377 4.788 -4.206 2.224 -0.104 C1 4PF 1
4PF O1 O1 O 0 1 N N N N N N 3.041 68.526 3.408 -3.442 1.052 -0.395 O1 4PF 2
4PF C2 C2 C 0 1 N N N N N N 1.657 68.840 3.178 -3.422 0.093 0.664 C2 4PF 3
4PF C3 C3 C 0 1 N N N N N N 1.405 68.995 1.675 -2.580 -1.113 0.244 C3 4PF 4
4PF O2 O2 O 0 1 N N N N N N 0.033 69.267 1.352 -1.220 -0.709 0.074 O2 4PF 5
4PF C4 C4 C 0 1 N N R N N N -0.076 69.836 0.029 -0.344 -1.767 -0.321 C4 4PF 6
4PF C5 C5 C 0 1 N N N N N N -1.011 71.044 0.020 0.231 -2.444 0.925 C5 4PF 7
4PF C6 C6 C 0 1 N N N N N N -0.435 68.791 -1.040 0.798 -1.196 -1.164 C6 4PF 8
4PF O3 O3 O 0 1 N N N N N N -1.267 69.285 -2.100 1.595 -0.325 -0.359 O3 4PF 9
4PF C7 C7 C 0 1 N N N N N N -2.400 68.437 -2.350 2.695 0.265 -1.054 C7 4PF 10
4PF C8 C8 C 0 1 N N R N N N -3.430 69.089 -3.280 3.475 1.172 -0.100 C8 4PF 11
4PF C9 C9 C 0 1 N N N N N N -2.742 69.792 -4.442 2.523 2.199 0.518 C9 4PF 12
4PF N1 N1 N 0 1 N N N N N N -4.380 68.113 -3.800 4.078 0.360 0.964 N1 4PF 13
4PF H1 H1 H 0 1 N N N N N N 4.459 68.139 4.874 -5.240 1.943 0.096 H1 4PF 14
4PF H2 H2 H 0 1 N N N N N N 3.177 69.315 5.322 -3.789 2.721 0.772 H2 4PF 15
4PF H3 H3 H 0 1 N N N N N N 2.795 67.562 5.229 -4.172 2.902 -0.957 H3 4PF 16
4PF H4 H4 H 0 1 N N N N N N 1.406 69.781 3.690 -2.988 0.546 1.556 H4 4PF 17
4PF H5 H5 H 0 1 N N N N N N 1.028 68.029 3.572 -4.440 -0.232 0.879 H5 4PF 18
4PF H6 H6 H 0 1 N N N N N N 1.703 68.062 1.173 -2.637 -1.882 1.014 H6 4PF 19
4PF H7 H7 H 0 1 N N N N N N 2.022 69.825 1.302 -2.960 -1.512 -0.697 H7 4PF 20
4PF H8 H8 H 0 1 N N N N N N 0.919 70.218 -0.242 -0.899 -2.498 -0.909 H8 4PF 21
4PF H9 H9 H 0 1 N N N N N N -0.704 71.752 0.804 0.786 -1.713 1.512 H9 4PF 22
4PF H10 H10 H 0 1 N N N N N N -0.961 71.539 -0.961 -0.582 -2.851 1.525 H10 4PF 23
4PF H11 H11 H 0 1 N N N N N N -2.042 70.711 0.211 0.900 -3.251 0.624 H11 4PF 24
4PF H12 H12 H 0 1 N N N N N N -0.964 67.962 -0.546 1.416 -2.011 -1.539 H12 4PF 25
4PF H13 H13 H 0 1 N N N N N N 0.500 68.418 -1.483 0.385 -0.637 -2.004 H13 4PF 26
4PF H14 H14 H 0 1 N N N N N N -2.887 68.207 -1.391 3.353 -0.521 -1.427 H14 4PF 27
4PF H15 H15 H 0 1 N N N N N N -2.047 67.504 -2.814 2.322 0.854 -1.892 H15 4PF 28
4PF H16 H16 H 0 1 N N N N N N -3.979 69.846 -2.700 4.260 1.691 -0.651 H16 4PF 29
4PF H17 H17 H 0 1 N N N N N N -2.025 70.529 -4.052 3.079 2.845 1.198 H17 4PF 30
4PF H18 H18 H 0 1 N N N N N N -2.209 69.050 -5.055 2.075 2.801 -0.272 H18 4PF 31
4PF H19 H19 H 0 1 N N N N N N -3.495 70.304 -5.058 1.739 1.681 1.069 H19 4PF 32
4PF H20 H20 H 0 1 N N N N N N -4.833 67.650 -3.038 4.661 -0.367 0.578 H20 4PF 33
4PF H21 H21 H 0 1 N N N N N N -5.064 68.580 -4.361 4.599 0.937 1.608 H21 4PF 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4PF C9 C8 SING N N 1
4PF N1 C8 SING N N 2
4PF C8 C7 SING N N 3
4PF C7 O3 SING N N 4
4PF O3 C6 SING N N 5
4PF C6 C4 SING N N 6
4PF C5 C4 SING N N 7
4PF C4 O2 SING N N 8
4PF O2 C3 SING N N 9
4PF C3 C2 SING N N 10
4PF C2 O1 SING N N 11
4PF O1 C1 SING N N 12
4PF C1 H1 SING N N 13
4PF C1 H2 SING N N 14
4PF C1 H3 SING N N 15
4PF C2 H4 SING N N 16
4PF C2 H5 SING N N 17
4PF C3 H6 SING N N 18
4PF C3 H7 SING N N 19
4PF C4 H8 SING N N 20
4PF C5 H9 SING N N 21
4PF C5 H10 SING N N 22
4PF C5 H11 SING N N 23
4PF C6 H12 SING N N 24
4PF C6 H13 SING N N 25
4PF C7 H14 SING N N 26
4PF C7 H15 SING N N 27
4PF C8 H16 SING N N 28
4PF C9 H17 SING N N 29
4PF C9 H18 SING N N 30
4PF C9 H19 SING N N 31
4PF N1 H20 SING N N 32
4PF N1 H21 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4PF SMILES ACDLabs 12.01 COCCOC(C)COCC(C)N
4PF InChI InChI 1.03 InChI=1S/C9H21NO3/c1-8(10)6-12-7-9(2)13-5-4-11-3/h8-9H,4-7,10H2,1-3H3/t8-,9-/m1/s1
4PF InChIKey InChI 1.03 QZWPAMVDKNPIHV-RKDXNWHRSA-N
4PF SMILES_CANONICAL CACTVS 3.385 COCCO[C@H](C)COC[C@@H](C)N
4PF SMILES CACTVS 3.385 COCCO[CH](C)COC[CH](C)N
4PF SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@H](COC[C@@H](C)OCCOC)N
4PF SMILES "OpenEye OEToolkits" 1.9.2 CC(COCC(C)OCCOC)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4PF "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-1-[(2R)-2-(2-methoxyethoxy)propoxy]propan-2-amine
4PF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (2R)-1-[(2R)-2-(2-methoxyethoxy)propoxy]propan-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4PF 'Create component' 2015-05-01 RCSB
4PF 'Initial release' 2015-07-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4PF C1 C 3.000 0.660 1
4PF O1 O 4.299 -0.090 2
4PF C2 C 5.598 0.660 3
4PF C3 C 6.897 -0.090 4
4PF O2 O 8.196 0.660 5
4PF C4 C 9.495 -0.090 6
4PF C5 C 9.495 -1.590 7
4PF C6 C 10.794 0.660 8
4PF O3 O 12.093 -0.090 9
4PF C7 C 13.392 0.660 10
4PF C8 C 14.691 -0.090 11
4PF C9 C 15.990 0.660 12
4PF N1 N 14.691 -1.590 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4PF C8 C9 SINGLE BEGINWEDGE 1
4PF N1 C8 SINGLE NONE 2
4PF C8 C7 SINGLE NONE 3
4PF C7 O3 SINGLE NONE 4
4PF O3 C6 SINGLE NONE 5
4PF C6 C4 SINGLE NONE 6
4PF C4 C5 SINGLE BEGINWEDGE 7
4PF C4 O2 SINGLE NONE 8
4PF O2 C3 SINGLE NONE 9
4PF C3 C2 SINGLE NONE 10
4PF C2 O1 SINGLE NONE 11
4PF O1 C1 SINGLE NONE 12
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 4PF
_pdbe_chem_comp_rdkit_properties.exactmw 191.152
_pdbe_chem_comp_rdkit_properties.amw 191.271
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 109.960
_pdbe_chem_comp_rdkit_properties.tpsa 53.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.402
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.758
_pdbe_chem_comp_rdkit_properties.chi0v 6.172
_pdbe_chem_comp_rdkit_properties.chi1v 2.698
_pdbe_chem_comp_rdkit_properties.chi2v 0.537
_pdbe_chem_comp_rdkit_properties.chi3v 0.537
_pdbe_chem_comp_rdkit_properties.chi4v 0.234
_pdbe_chem_comp_rdkit_properties.chi0n 27.172
_pdbe_chem_comp_rdkit_properties.chi1n 13.093
_pdbe_chem_comp_rdkit_properties.chi2n 0.537
_pdbe_chem_comp_rdkit_properties.chi3n 0.537
_pdbe_chem_comp_rdkit_properties.chi4n 0.234
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.160
_pdbe_chem_comp_rdkit_properties.kappa1 1.669
_pdbe_chem_comp_rdkit_properties.kappa2 8.439
_pdbe_chem_comp_rdkit_properties.kappa3 9.756
_pdbe_chem_comp_rdkit_properties.Phi 1.083
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4PF UniChem PDBe 4PF
4PF UniChem ZINC ZINC000143891001
4PF UniChem PubChem 91819620
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4PF C1 5.597 1.756 -0.941 ETKDGv3 1
4PF O1 4.563 0.865 -0.588 ETKDGv3 2
4PF C2 3.629 1.534 0.232 ETKDGv3 3
4PF C3 2.505 0.576 0.605 ETKDGv3 4
4PF O2 1.843 0.150 -0.569 ETKDGv3 5
4PF C4 0.715 -0.649 -0.252 ETKDGv3 6
4PF C5 0.659 -1.814 -1.242 ETKDGv3 7
4PF C6 -0.556 0.207 -0.349 ETKDGv3 8
4PF O3 -1.678 -0.563 0.031 ETKDGv3 9
4PF C7 -2.851 0.214 -0.092 ETKDGv3 10
4PF C8 -4.067 -0.614 0.360 ETKDGv3 11
4PF C9 -3.970 -0.982 1.844 ETKDGv3 12
4PF N1 -5.315 0.113 0.117 ETKDGv3 13
4PF H1 5.204 2.615 -1.530 ETKDGv3 14
4PF H2 6.325 1.216 -1.581 ETKDGv3 15
4PF H3 6.143 2.118 -0.042 ETKDGv3 16
4PF H4 3.184 2.406 -0.301 ETKDGv3 17
4PF H5 4.112 1.885 1.173 ETKDGv3 18
4PF H6 1.804 1.109 1.286 ETKDGv3 19
4PF H7 2.945 -0.297 1.139 ETKDGv3 20
4PF H8 0.766 -1.096 0.772 ETKDGv3 21
4PF H9 -0.201 -2.479 -1.015 ETKDGv3 22
4PF H10 0.564 -1.437 -2.283 ETKDGv3 23
4PF H11 1.591 -2.413 -1.166 ETKDGv3 24
4PF H12 -0.444 1.080 0.333 ETKDGv3 25
4PF H13 -0.661 0.580 -1.394 ETKDGv3 26
4PF H14 -3.003 0.509 -1.156 ETKDGv3 27
4PF H15 -2.786 1.135 0.533 ETKDGv3 28
4PF H16 -4.090 -1.559 -0.228 ETKDGv3 29
4PF H17 -4.861 -1.573 2.145 ETKDGv3 30
4PF H18 -3.920 -0.067 2.472 ETKDGv3 31
4PF H19 -3.065 -1.599 2.032 ETKDGv3 32
4PF H20 -5.422 0.262 -0.913 ETKDGv3 33
4PF H21 -5.261 1.056 0.566 ETKDGv3 34
#