data_4PZ
#
_chem_comp.id 4PZ
_chem_comp.name 4-methyl-1H-pyrazole
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H6 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-08-19
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 82.104
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4PZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3E4E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4PZ C3 C3 C 0 1 Y N N N N N 40.041 29.664 8.589 -0.109 -1.094 -0.000 C3 4PZ 1
4PZ N2 N2 N 0 1 Y N N N N N 38.803 29.967 8.096 -1.385 -0.652 -0.000 N2 4PZ 2
4PZ N1 N1 N 0 1 Y N N N N N 37.998 30.368 9.203 -1.356 0.748 0.000 N1 4PZ 3
4PZ C4 C4 C 0 1 Y N N N N N 39.939 29.890 9.932 0.702 -0.010 -0.000 C4 4PZ 4
4PZ C19 C19 C 0 1 N N N N N N 41.091 29.662 10.849 2.209 -0.031 -0.000 C19 4PZ 5
4PZ C5 C5 C 0 1 Y N N N N N 38.708 30.326 10.357 -0.105 1.132 0.000 C5 4PZ 6
4PZ H3 H3 H 0 1 N N N N N N 40.906 29.322 8.040 0.207 -2.126 0.004 H3 4PZ 7
4PZ HN2 HN2 H 0 1 N N N N N N 38.516 29.917 7.139 -2.181 -1.207 -0.001 HN2 4PZ 8
4PZ H19 H19 H 0 1 N N N N N N 42.021 29.606 10.264 2.572 -0.036 -1.028 H19 4PZ 9
4PZ H19A H19A H 0 0 N N N N N N 41.159 30.494 11.566 2.584 0.854 0.514 H19A 4PZ 10
4PZ H19B H19B H 0 0 N N N N N N 40.944 28.718 11.394 2.560 -0.926 0.514 H19B 4PZ 11
4PZ H5 H5 H 0 1 N N N N N N 38.387 30.573 11.358 0.243 2.154 -0.000 H5 4PZ 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4PZ C3 N2 SING Y N 1
4PZ C3 C4 DOUB Y N 2
4PZ N2 N1 SING Y N 3
4PZ N1 C5 DOUB Y N 4
4PZ C4 C19 SING N N 5
4PZ C4 C5 SING Y N 6
4PZ C3 H3 SING N N 7
4PZ N2 HN2 SING N N 8
4PZ C19 H19 SING N N 9
4PZ C19 H19A SING N N 10
4PZ C19 H19B SING N N 11
4PZ C5 H5 SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4PZ SMILES ACDLabs 10.04 n1cc(cn1)C
4PZ SMILES_CANONICAL CACTVS 3.341 Cc1c[nH]nc1
4PZ SMILES CACTVS 3.341 Cc1c[nH]nc1
4PZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1c[nH]nc1
4PZ SMILES "OpenEye OEToolkits" 1.5.0 Cc1c[nH]nc1
4PZ InChI InChI 1.03 InChI=1S/C4H6N2/c1-4-2-5-6-3-4/h2-3H,1H3,(H,5,6)
4PZ InChIKey InChI 1.03 RIKMMFOAQPJVMX-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4PZ "SYSTEMATIC NAME" ACDLabs 10.04 4-methyl-1H-pyrazole
4PZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-methyl-1H-pyrazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4PZ 'Create component' 2008-08-19 RCSB
4PZ 'Modify aromatic_flag' 2011-06-04 RCSB
4PZ 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 4PZ
_pdbe_chem_comp_drugbank_details.drugbank_id DB01213
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Fomepizole
_pdbe_chem_comp_drugbank_details.description
'Fomepizole is used as an antidote in confirmed or suspected methanol or ethylene glycol poisoning. Fomepizole is a competitive inhibitor of alcohol dehydrogenase, the enzyme that catalyzes the initial steps in the metabolism of ethylene glycol and methanol to their toxic metabolites.'
_pdbe_chem_comp_drugbank_details.cas_number 7554-65-6
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Antizol (fomepizole) is a competitive inhibitor of alcohol dehydrogenase. Alcohol dehydrogenase catalyzes the oxidation of ethanol to acetaldehyde. Alcohol dehydrogenase also catalyzes the initial steps in the metabolism of ethylene glycol and methanol to their toxic metabolites.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
4PZ Antizol ChEMBL Tradename
4PZ Fomepizole ChEMBL Tradename
4PZ 4-methylpyrazol DrugBank ?
4PZ 4-methylpyrazole DrugBank ?
4PZ Fomepizole DrugBank ?
4PZ Fomepizolum DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 4PZ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01213
_pdbe_chem_comp_drugbank_classification.parent Pyrazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Azoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrazoles. These are compounds containing a pyrazole ring, which is a five-member aromatic ring with two nitrogen atoms (at positions 1 and 2) and three carbon atoms.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
4PZ DB01213 'Alcohol dehydrogenase 1A' Humans P07327 yes 1
4PZ DB01213 'Alcohol dehydrogenase 1B' Humans P00325 yes 2
4PZ DB01213 'Alcohol dehydrogenase 1C' Humans P00326 yes 3
4PZ DB01213 Catalase Humans P04040 yes 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4PZ C3 C 3.418 -0.414 1
4PZ N2 N 4.632 -1.296 2
4PZ N1 N 5.845 -0.414 3
4PZ C4 C 3.882 1.012 4
4PZ C19 C 3.000 2.226 5
4PZ C5 C 5.382 1.012 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4PZ C3 N2 SINGLE NONE 1
4PZ C3 C4 DOUBLE NONE 2
4PZ N2 N1 SINGLE NONE 3
4PZ N1 C5 DOUBLE NONE 4
4PZ C4 C19 SINGLE NONE 5
4PZ C4 C5 SINGLE NONE 6
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4PZ MurckoScaffold S1 scaffold 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
4PZ pyrazole F1 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4PZ C3 S1 1
4PZ N2 S1 1
4PZ N1 S1 1
4PZ C4 S1 1
4PZ C5 S1 1
4PZ C3 F1 1
4PZ C4 F1 1
4PZ C5 F1 1
4PZ N1 F1 1
4PZ N2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4PZ
_pdbe_chem_comp_rdkit_properties.exactmw 82.053
_pdbe_chem_comp_rdkit_properties.amw 82.106
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 44.681
_pdbe_chem_comp_rdkit_properties.tpsa 28.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.663
_pdbe_chem_comp_rdkit_properties.CrippenMR 23.059
_pdbe_chem_comp_rdkit_properties.chi0v 2.894
_pdbe_chem_comp_rdkit_properties.chi1v 1.397
_pdbe_chem_comp_rdkit_properties.chi2v 0.374
_pdbe_chem_comp_rdkit_properties.chi3v 0.374
_pdbe_chem_comp_rdkit_properties.chi4v 0.175
_pdbe_chem_comp_rdkit_properties.chi0n 8.894
_pdbe_chem_comp_rdkit_properties.chi1n 4.344
_pdbe_chem_comp_rdkit_properties.chi2n 0.374
_pdbe_chem_comp_rdkit_properties.chi3n 0.374
_pdbe_chem_comp_rdkit_properties.chi4n 0.175
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.790
_pdbe_chem_comp_rdkit_properties.kappa1 0.735
_pdbe_chem_comp_rdkit_properties.kappa2 1.125
_pdbe_chem_comp_rdkit_properties.kappa3 0.407
_pdbe_chem_comp_rdkit_properties.Phi 0.138
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4PZ UniChem ChEMBL CHEMBL1308
4PZ UniChem DrugBank DB01213
4PZ UniChem PDBe 4PZ
4PZ UniChem 'KEGG LIGAND' C07837
4PZ UniChem ChEBI 5141
4PZ UniChem ZINC ZINC000000897288
4PZ UniChem eMolecules 489528
4PZ UniChem fdasrs 83LCM6L2BY
4PZ UniChem PharmGKB PA449697
4PZ UniChem HMDB HMDB0015344
4PZ UniChem 'PubChem TPHARMA' 15170375
4PZ UniChem PubChem 3406
4PZ UniChem Mcule MCULE-2732751720
4PZ UniChem LINCS LSM-5671
4PZ UniChem ACTor 7554-65-6
4PZ UniChem BindingDb 50226186
4PZ UniChem DrugCentral 1233
4PZ UniChem BRENDA 2464
4PZ UniChem ChemicalBook CB8233079
4PZ UniChem DailyMed FOMEPIZOLE
4PZ UniChem ClinicalTrials ANTIZOL
4PZ UniChem ClinicalTrials FOMEPIZOLE
4PZ UniChem rxnorm FOMEPIZOLE
4PZ UniChem MedChemExpress HY-B0876
4PZ UniChem 'Probes And Drugs' PD000178
4PZ UniChem 'EPA CompTox Dashboard' DTXSID3040649
4PZ UniChem SureChEMBL SCHEMBL10591
4PZ UniChem Nikkaji J35.396E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4PZ C3 0.662 -0.910 -0.158 ETKDGv3 1
4PZ N2 1.945 -0.314 -0.064 ETKDGv3 2
4PZ N1 1.764 1.046 0.208 ETKDGv3 3
4PZ C4 -0.245 0.027 0.067 ETKDGv3 4
4PZ C19 -1.726 -0.131 -0.034 ETKDGv3 5
4PZ C5 0.493 1.271 0.285 ETKDGv3 6
4PZ H3 0.471 -1.947 -0.403 ETKDGv3 7
4PZ HN2 2.869 -0.780 -0.202 ETKDGv3 8
4PZ H19 -2.231 0.649 0.574 ETKDGv3 9
4PZ H19A -2.031 -1.131 0.341 ETKDGv3 10
4PZ H19B -2.039 -0.026 -1.094 ETKDGv3 11
4PZ H5 0.067 2.246 0.479 ETKDGv3 12
#