data_4WC
#
_chem_comp.id 4WC
_chem_comp.name "(S)-CYCLOHEXYL LACTIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H16 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-09
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 172.222
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4WC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4C16
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4WC CAD CAD C 0 1 N N N N N N -43.011 -6.485 1.350 -1.932 0.381 -1.348 CAD 4WC 1
4WC CAC CAC C 0 1 N N N N N N -43.600 -7.815 1.863 -3.342 0.648 -0.817 CAC 4WC 2
4WC CAB CAB C 0 1 N N N N N N -44.758 -7.582 2.899 -3.750 -0.477 0.136 CAB 4WC 3
4WC CAG CAG C 0 1 N N N N N N -45.793 -6.471 2.470 -2.767 -0.535 1.307 CAG 4WC 4
4WC CAF CAF C 0 1 N N N N N N -45.071 -5.207 1.974 -1.357 -0.802 0.776 CAF 4WC 5
4WC CAE CAE C 0 1 N N N N N N -44.163 -5.639 0.813 -0.949 0.323 -0.177 CAE 4WC 6
4WC CAH CAH C 0 1 N N N N N N -43.689 -4.457 -0.033 0.461 0.056 -0.707 CAH 4WC 7
4WC CAI CAI C 0 1 N N S N N N -44.572 -4.347 -1.295 1.462 0.121 0.448 CAI 4WC 8
4WC CBM CBM C 0 1 N N N N N N -44.176 -3.076 -2.071 2.831 -0.262 -0.051 CBM 4WC 9
4WC OBO OBO O 0 1 N N N N N N -44.677 -1.997 -1.690 3.059 -1.508 -0.495 OBO 4WC 10
4WC OBN OBN O 0 1 N N N N N N -43.362 -3.205 -3.009 3.724 0.552 -0.051 OBN 4WC 11
4WC O3 O3 O 0 1 N Y N N N N -44.457 -5.565 -2.098 1.500 1.451 0.970 O3 4WC 12
4WC HAD1 HAD1 H 0 0 N N N N N N -42.510 -5.955 2.174 -1.918 -0.569 -1.881 HAD1 4WC 13
4WC HAD2 HAD2 H 0 0 N N N N N N -42.286 -6.682 0.547 -1.641 1.183 -2.027 HAD2 4WC 14
4WC HAC1 HAC1 H 0 0 N N N N N N -43.997 -8.382 1.008 -3.355 1.599 -0.284 HAC1 4WC 15
4WC HAC2 HAC2 H 0 0 N N N N N N -42.800 -8.395 2.348 -4.042 0.690 -1.651 HAC2 4WC 16
4WC HAE HAE H 0 1 N N N N N N -44.763 -6.287 0.157 -0.962 1.273 0.356 HAE 4WC 17
4WC HAB1 HAB1 H 0 0 N N N N N N -45.302 -8.529 3.028 -4.754 -0.287 0.514 HAB1 4WC 18
4WC HAB2 HAB2 H 0 0 N N N N N N -44.309 -7.284 3.858 -3.736 -1.428 -0.398 HAB2 4WC 19
4WC HAG1 HAG1 H 0 0 N N N N N N -46.427 -6.863 1.662 -2.780 0.415 1.840 HAG1 4WC 20
4WC HAG2 HAG2 H 0 0 N N N N N N -46.421 -6.211 3.335 -3.057 -1.337 1.985 HAG2 4WC 21
4WC HAF1 HAF1 H 0 0 N N N N N N -45.804 -4.465 1.625 -0.657 -0.844 1.610 HAF1 4WC 22
4WC HAF2 HAF2 H 0 0 N N N N N N -44.468 -4.773 2.785 -1.343 -1.753 0.243 HAF2 4WC 23
4WC HAH1 HAH1 H 0 0 N N N N N N -43.769 -3.530 0.553 0.496 -0.934 -1.163 HAH1 4WC 24
4WC HAH2 HAH2 H 0 0 N N N N N N -42.642 -4.614 -0.330 0.717 0.808 -1.453 HAH2 4WC 25
4WC HAI HAI H 0 1 N N N N N N -45.616 -4.233 -0.968 1.155 -0.569 1.234 HAI 4WC 26
4WC H3 H3 H 0 1 N N N N N N -43.981 -5.374 -2.897 1.766 2.120 0.324 H3 4WC 27
4WC HBO HBO H 0 1 N N N N N N -44.343 -1.286 -2.225 3.953 -1.707 -0.805 HBO 4WC 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4WC CAD CAC SING N N 1
4WC CAD CAE SING N N 2
4WC CAC CAB SING N N 3
4WC CAB CAG SING N N 4
4WC CAG CAF SING N N 5
4WC CAF CAE SING N N 6
4WC CAE CAH SING N N 7
4WC CAH CAI SING N N 8
4WC CAI CBM SING N N 9
4WC CAI O3 SING N N 10
4WC CBM OBO SING N N 11
4WC CBM OBN DOUB N N 12
4WC CAD HAD1 SING N N 13
4WC CAD HAD2 SING N N 14
4WC CAC HAC1 SING N N 15
4WC CAC HAC2 SING N N 16
4WC CAE HAE SING N N 17
4WC CAB HAB1 SING N N 18
4WC CAB HAB2 SING N N 19
4WC CAG HAG1 SING N N 20
4WC CAG HAG2 SING N N 21
4WC CAF HAF1 SING N N 22
4WC CAF HAF2 SING N N 23
4WC CAH HAH1 SING N N 24
4WC CAH HAH2 SING N N 25
4WC CAI HAI SING N N 26
4WC O3 H3 SING N N 27
4WC OBO HBO SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4WC SMILES ACDLabs 12.01 O=C(O)C(O)CC1CCCCC1
4WC InChI InChI 1.03 InChI=1S/C9H16O3/c10-8(9(11)12)6-7-4-2-1-3-5-7/h7-8,10H,1-6H2,(H,11,12)/t8-/m0/s1
4WC InChIKey InChI 1.03 WMHUKKRNWMPXKB-QMMMGPOBSA-N
4WC SMILES_CANONICAL CACTVS 3.385 O[C@@H](CC1CCCCC1)C(O)=O
4WC SMILES CACTVS 3.385 O[CH](CC1CCCCC1)C(O)=O
4WC SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C1CCC(CC1)C[C@@H](C(=O)O)O
4WC SMILES "OpenEye OEToolkits" 1.9.2 C1CCC(CC1)CC(C(=O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4WC "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-3-cyclohexyl-2-hydroxypropanoic acid"
4WC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-3-cyclohexyl-2-oxidanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4WC 'Create component' 2013-08-09 EBI
4WC 'Initial release' 2014-08-20 RCSB
4WC 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4WC CAD C 3.000 -1.965 1
4WC CAC C 3.000 -3.465 2
4WC CAB C 4.299 -4.215 3
4WC CAG C 5.598 -3.465 4
4WC CAF C 5.598 -1.965 5
4WC CAE C 4.299 -1.215 6
4WC CAH C 4.299 0.285 7
4WC CAI C 5.598 1.035 8
4WC CBM C 5.598 2.535 9
4WC OBO O 6.897 3.285 10
4WC OBN O 4.299 3.285 11
4WC O3 O 6.897 0.285 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4WC CAD CAC SINGLE NONE 1
4WC CAD CAE SINGLE NONE 2
4WC CAC CAB SINGLE NONE 3
4WC CAB CAG SINGLE NONE 4
4WC CAG CAF SINGLE NONE 5
4WC CAF CAE SINGLE NONE 6
4WC CAE CAH SINGLE NONE 7
4WC CAH CAI SINGLE NONE 8
4WC CAI CBM SINGLE NONE 9
4WC CAI O3 SINGLE BEGINWEDGE 10
4WC CBM OBO SINGLE NONE 11
4WC CBM OBN DOUBLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4WC MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
4WC cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4WC CAD S1 1
4WC CAC S1 1
4WC CAB S1 1
4WC CAG S1 1
4WC CAF S1 1
4WC CAE S1 1
4WC CAD F1 1
4WC CAC F1 1
4WC CAB F1 1
4WC CAG F1 1
4WC CAF F1 1
4WC CAE F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4WC
_pdbe_chem_comp_rdkit_properties.exactmw 172.110
_pdbe_chem_comp_rdkit_properties.amw 172.224
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 95.056
_pdbe_chem_comp_rdkit_properties.tpsa 57.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.402
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.835
_pdbe_chem_comp_rdkit_properties.chi0v 5.725
_pdbe_chem_comp_rdkit_properties.chi1v 2.862
_pdbe_chem_comp_rdkit_properties.chi2v 0.924
_pdbe_chem_comp_rdkit_properties.chi3v 0.924
_pdbe_chem_comp_rdkit_properties.chi4v 0.477
_pdbe_chem_comp_rdkit_properties.chi0n 21.725
_pdbe_chem_comp_rdkit_properties.chi1n 10.679
_pdbe_chem_comp_rdkit_properties.chi2n 0.924
_pdbe_chem_comp_rdkit_properties.chi3n 0.924
_pdbe_chem_comp_rdkit_properties.chi4n 0.477
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.653
_pdbe_chem_comp_rdkit_properties.kappa2 4.454
_pdbe_chem_comp_rdkit_properties.kappa3 2.815
_pdbe_chem_comp_rdkit_properties.Phi 0.613
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4WC UniChem PDBe 4WC
4WC UniChem ZINC ZINC000039279400
4WC UniChem SureChEMBL SCHEMBL2164841
4WC UniChem PubChem 12756210
4WC UniChem Nikkaji J2.180.185B
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4WC CAD -0.827 -0.707 -0.803 ETKDGv3 1
4WC CAC -2.367 -0.753 -0.732 ETKDGv3 2
4WC CAB -2.951 0.574 -0.241 ETKDGv3 3
4WC CAG -2.460 0.917 1.179 ETKDGv3 4
4WC CAF -1.054 0.363 1.494 ETKDGv3 5
4WC CAE -0.181 0.260 0.227 ETKDGv3 6
4WC CAH 1.261 -0.160 0.600 ETKDGv3 7
4WC CAI 2.264 -0.005 -0.566 ETKDGv3 8
4WC CBM 3.680 -0.110 -0.070 ETKDGv3 9
4WC OBO 4.534 0.983 -0.178 ETKDGv3 10
4WC OBN 4.096 -1.181 0.449 ETKDGv3 11
4WC O3 2.038 -0.952 -1.580 ETKDGv3 12
4WC HAD1 -0.450 -1.743 -0.654 ETKDGv3 13
4WC HAD2 -0.528 -0.387 -1.825 ETKDGv3 14
4WC HAC1 -2.779 -0.991 -1.736 ETKDGv3 15
4WC HAC2 -2.684 -1.563 -0.039 ETKDGv3 16
4WC HAE -0.137 1.278 -0.224 ETKDGv3 17
4WC HAB1 -2.652 1.383 -0.944 ETKDGv3 18
4WC HAB2 -4.061 0.518 -0.246 ETKDGv3 19
4WC HAG1 -3.177 0.510 1.925 ETKDGv3 20
4WC HAG2 -2.455 2.023 1.295 ETKDGv3 21
4WC HAF1 -0.571 1.026 2.244 ETKDGv3 22
4WC HAF2 -1.151 -0.646 1.953 ETKDGv3 23
4WC HAH1 1.607 0.490 1.435 ETKDGv3 24
4WC HAH2 1.268 -1.206 0.979 ETKDGv3 25
4WC HAI 2.135 1.006 -1.009 ETKDGv3 26
4WC H3 2.114 -1.856 -1.175 ETKDGv3 27
4WC HBO 5.490 0.931 0.153 ETKDGv3 28
#