data_4YX
#
_chem_comp.id 4YX
_chem_comp.name
N-{2-[4-(2-aminoethyl)-4-methoxypiperidin-1-yl]pyrimidin-4-yl}-2-methyl-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H32 N8 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-06-26
_chem_comp.pdbx_modified_date 2015-10-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 424.542
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4YX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5C8N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4YX C4 C1 C 0 1 Y N N N N N -52.730 1.340 -19.787 3.186 1.415 0.519 C4 4YX 1
4YX C5 C2 C 0 1 Y N N N N N -53.719 2.297 -19.976 1.865 1.033 0.747 C5 4YX 2
4YX C11 C3 C 0 1 N N N N N N -50.784 -1.278 -21.336 6.556 0.516 -0.576 C11 4YX 3
4YX C7 C4 C 0 1 Y N N N N N -53.997 1.670 -22.213 2.314 -1.134 0.064 C7 4YX 4
4YX C8 C5 C 0 1 Y N N N N N -53.006 0.700 -22.134 3.643 -0.837 -0.197 C8 4YX 5
4YX C9 C6 C 0 1 Y N N N N N -52.366 0.534 -20.895 4.096 0.455 0.032 C9 4YX 6
4YX C12 C7 C 0 1 N N N N N N -49.345 -0.935 -21.697 6.977 -0.616 0.363 C12 4YX 7
4YX C13 C8 C 0 1 N N N N N N -51.086 -2.742 -21.057 6.356 -0.039 -1.988 C13 4YX 8
4YX N3 N1 N 0 1 Y N N N N N -51.962 0.961 -18.729 3.875 2.577 0.653 N3 4YX 9
4YX C1 C9 C 0 1 N N N N N N -50.214 -0.647 -18.126 6.181 3.457 0.311 C1 4YX 10
4YX C2 C10 C 0 1 Y N N N N N -51.181 -0.015 -19.096 5.113 2.394 0.297 C2 4YX 11
4YX N6 N2 N 0 1 Y N N N N N -54.305 2.429 -21.160 1.481 -0.206 0.517 N6 4YX 12
4YX N10 N3 N 0 1 Y N N N N N -51.389 -0.307 -20.431 5.301 1.104 -0.101 N10 4YX 13
4YX N14 N4 N 0 1 N N N N N N -54.696 1.935 -23.378 1.844 -2.427 -0.161 N14 4YX 14
4YX C15 C11 C 0 1 Y N N N N N -54.786 1.117 -24.482 0.493 -2.708 -0.021 C15 4YX 15
4YX C16 C12 C 0 1 Y N N N N N -55.927 1.206 -25.285 0.027 -4.020 -0.123 C16 4YX 16
4YX C17 C13 C 0 1 Y N N N N N -55.987 0.384 -26.402 -1.327 -4.252 0.023 C17 4YX 17
4YX N18 N5 N 0 1 Y N N N N N -54.971 -0.431 -26.658 -2.138 -3.231 0.255 N18 4YX 18
4YX C19 C14 C 0 1 Y N N N N N -53.891 -0.473 -25.891 -1.669 -1.995 0.348 C19 4YX 19
4YX N20 N6 N 0 1 Y N N N N N -53.800 0.286 -24.816 -0.377 -1.731 0.219 N20 4YX 20
4YX N21 N7 N 0 1 N N N N N N -52.852 -1.345 -26.179 -2.549 -0.956 0.591 N21 4YX 21
4YX C22 C15 C 0 1 N N N N N N -52.566 -1.657 -27.597 -2.442 0.078 -0.447 C22 4YX 22
4YX C23 C16 C 0 1 N N N N N N -51.931 -3.049 -27.618 -3.319 1.274 -0.070 C23 4YX 23
4YX C24 C17 C 0 1 N N N N N N -50.676 -3.108 -26.717 -4.773 0.811 0.067 C24 4YX 24
4YX C25 C18 C 0 1 N N N N N N -50.932 -2.540 -25.300 -4.849 -0.299 1.119 C25 4YX 25
4YX C26 C19 C 0 1 N N N N N N -51.646 -1.169 -25.354 -3.927 -1.449 0.708 C26 4YX 26
4YX C27 C20 C 0 1 N N N N N N -50.263 -4.579 -26.557 -5.646 1.990 0.503 C27 4YX 27
4YX C28 C21 C 0 1 N N N N N N -49.713 -5.127 -27.885 -5.584 3.090 -0.559 C28 4YX 28
4YX N29 N8 N 0 1 N N N N N N -49.176 -6.481 -27.712 -6.366 4.249 -0.108 N29 4YX 29
4YX O30 O1 O 0 1 N N N N N N -49.649 -2.351 -27.394 -5.236 0.313 -1.189 O30 4YX 30
4YX C31 C22 C 0 1 N N N N N N -48.432 -2.084 -26.681 -6.612 -0.073 -1.190 C31 4YX 31
4YX H1 H1 H 0 1 N N N N N N -54.012 2.936 -19.156 1.153 1.756 1.115 H1 4YX 32
4YX H2 H2 H 0 1 N N N N N N -51.316 -1.101 -22.282 7.332 1.282 -0.594 H2 4YX 33
4YX H3 H3 H 0 1 N N N N N N -52.739 0.098 -22.990 4.314 -1.599 -0.565 H3 4YX 34
4YX H4 H4 H 0 1 N N N N N N -49.259 0.147 -21.874 7.955 -0.992 0.063 H4 4YX 35
4YX H5 H5 H 0 1 N N N N N N -48.680 -1.226 -20.870 7.029 -0.240 1.384 H5 4YX 36
4YX H6 H6 H 0 1 N N N N N N -49.056 -1.479 -22.608 6.245 -1.422 0.310 H6 4YX 37
4YX H7 H7 H 0 1 N N N N N N -52.152 -2.856 -20.810 5.580 -0.805 -1.971 H7 4YX 38
4YX H8 H8 H 0 1 N N N N N N -50.850 -3.341 -21.949 6.056 0.767 -2.657 H8 4YX 39
4YX H9 H9 H 0 1 N N N N N N -50.474 -3.088 -20.211 7.290 -0.477 -2.342 H9 4YX 40
4YX H10 H10 H 0 1 N N N N N N -50.303 -0.156 -17.146 6.629 3.508 1.303 H10 4YX 41
4YX H11 H11 H 0 1 N N N N N N -50.446 -1.717 -18.022 6.949 3.211 -0.422 H11 4YX 42
4YX H12 H12 H 0 1 N N N N N N -49.187 -0.529 -18.503 5.737 4.421 0.063 H12 4YX 43
4YX H13 H13 H 0 1 N N N N N N -55.184 2.807 -23.422 2.461 -3.131 -0.415 H13 4YX 44
4YX H14 H14 H 0 1 N N N N N N -56.730 1.887 -25.046 0.710 -4.835 -0.313 H14 4YX 45
4YX H15 H15 H 0 1 N N N N N N -56.848 0.407 -27.053 -1.720 -5.256 -0.051 H15 4YX 46
4YX H16 H16 H 0 1 N N N N N N -51.870 -0.916 -28.016 -1.404 0.401 -0.531 H16 4YX 47
4YX H17 H17 H 0 1 N N N N N N -53.498 -1.656 -28.181 -2.774 -0.330 -1.401 H17 4YX 48
4YX H18 H18 H 0 1 N N N N N N -52.666 -3.784 -27.257 -2.979 1.691 0.878 H18 4YX 49
4YX H19 H19 H 0 1 N N N N N N -51.643 -3.296 -28.650 -3.252 2.034 -0.848 H19 4YX 50
4YX H20 H20 H 0 1 N N N N N N -51.561 -3.248 -24.740 -4.533 0.093 2.086 H20 4YX 51
4YX H21 H21 H 0 1 N N N N N N -49.968 -2.420 -24.785 -5.874 -0.662 1.191 H21 4YX 52
4YX H22 H22 H 0 1 N N N N N N -50.985 -0.416 -25.807 -4.252 -1.850 -0.252 H22 4YX 53
4YX H23 H23 H 0 1 N N N N N N -51.926 -0.848 -24.340 -3.968 -2.235 1.462 H23 4YX 54
4YX H24 H24 H 0 1 N N N N N N -51.140 -5.171 -26.255 -6.676 1.655 0.620 H24 4YX 55
4YX H25 H25 H 0 1 N N N N N N -49.485 -4.655 -25.783 -5.280 2.380 1.453 H25 4YX 56
4YX H26 H26 H 0 1 N N N N N N -48.911 -4.465 -28.243 -4.547 3.388 -0.713 H26 4YX 57
4YX H27 H27 H 0 1 N N N N N N -50.525 -5.154 -28.627 -5.997 2.715 -1.495 H27 4YX 58
4YX H28 H28 H 0 1 N N N N N N -48.825 -6.815 -28.587 -6.043 4.576 0.790 H28 4YX 59
4YX H29 H29 H 0 1 N N N N N N -48.435 -6.462 -27.041 -6.341 4.990 -0.792 H29 4YX 60
4YX H31 H31 H 0 1 N N N N N N -47.752 -1.503 -27.321 -6.862 -0.524 -2.150 H31 4YX 61
4YX H32 H32 H 0 1 N N N N N N -48.659 -1.510 -25.771 -6.787 -0.795 -0.393 H32 4YX 62
4YX H33 H33 H 0 1 N N N N N N -47.953 -3.035 -26.405 -7.235 0.806 -1.028 H33 4YX 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4YX C28 N29 SING N N 1
4YX C28 C27 SING N N 2
4YX C23 C22 SING N N 3
4YX C23 C24 SING N N 4
4YX C22 N21 SING N N 5
4YX O30 C24 SING N N 6
4YX O30 C31 SING N N 7
4YX C24 C27 SING N N 8
4YX C24 C25 SING N N 9
4YX N18 C17 DOUB Y N 10
4YX N18 C19 SING Y N 11
4YX C17 C16 SING Y N 12
4YX N21 C19 SING N N 13
4YX N21 C26 SING N N 14
4YX C19 N20 DOUB Y N 15
4YX C26 C25 SING N N 16
4YX C16 C15 DOUB Y N 17
4YX N20 C15 SING Y N 18
4YX C15 N14 SING N N 19
4YX N14 C7 SING N N 20
4YX C7 C8 DOUB Y N 21
4YX C7 N6 SING Y N 22
4YX C8 C9 SING Y N 23
4YX C12 C11 SING N N 24
4YX C11 C13 SING N N 25
4YX C11 N10 SING N N 26
4YX N6 C5 DOUB Y N 27
4YX C9 N10 SING Y N 28
4YX C9 C4 DOUB Y N 29
4YX N10 C2 SING Y N 30
4YX C5 C4 SING Y N 31
4YX C4 N3 SING Y N 32
4YX C2 N3 DOUB Y N 33
4YX C2 C1 SING N N 34
4YX C5 H1 SING N N 35
4YX C11 H2 SING N N 36
4YX C8 H3 SING N N 37
4YX C12 H4 SING N N 38
4YX C12 H5 SING N N 39
4YX C12 H6 SING N N 40
4YX C13 H7 SING N N 41
4YX C13 H8 SING N N 42
4YX C13 H9 SING N N 43
4YX C1 H10 SING N N 44
4YX C1 H11 SING N N 45
4YX C1 H12 SING N N 46
4YX N14 H13 SING N N 47
4YX C16 H14 SING N N 48
4YX C17 H15 SING N N 49
4YX C22 H16 SING N N 50
4YX C22 H17 SING N N 51
4YX C23 H18 SING N N 52
4YX C23 H19 SING N N 53
4YX C25 H20 SING N N 54
4YX C25 H21 SING N N 55
4YX C26 H22 SING N N 56
4YX C26 H23 SING N N 57
4YX C27 H24 SING N N 58
4YX C27 H25 SING N N 59
4YX C28 H26 SING N N 60
4YX C28 H27 SING N N 61
4YX N29 H28 SING N N 62
4YX N29 H29 SING N N 63
4YX C31 H31 SING N N 64
4YX C31 H32 SING N N 65
4YX C31 H33 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4YX SMILES ACDLabs 12.01 c21nc(C)n(C(C)C)c1cc(nc2)Nc3ccnc(n3)N4CCC(CC4)(CCN)OC
4YX InChI InChI 1.03 InChI=1S/C22H32N8O/c1-15(2)30-16(3)26-17-14-25-20(13-18(17)30)27-19-5-10-24-21(28-19)29-11-7-22(31-4,6-9-23)8-12-29/h5,10,13-15H,6-9,11-12,23H2,1-4H3,(H,24,25,27,28)
4YX InChIKey InChI 1.03 CGDZTEHAPAOWKF-UHFFFAOYSA-N
4YX SMILES_CANONICAL CACTVS 3.385 COC1(CCN)CCN(CC1)c2nccc(Nc3cc4n(C(C)C)c(C)nc4cn3)n2
4YX SMILES CACTVS 3.385 COC1(CCN)CCN(CC1)c2nccc(Nc3cc4n(C(C)C)c(C)nc4cn3)n2
4YX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 Cc1nc2cnc(cc2n1C(C)C)Nc3ccnc(n3)N4CCC(CC4)(CCN)OC
4YX SMILES "OpenEye OEToolkits" 1.9.2 Cc1nc2cnc(cc2n1C(C)C)Nc3ccnc(n3)N4CCC(CC4)(CCN)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4YX "SYSTEMATIC NAME" ACDLabs 12.01 N-{2-[4-(2-aminoethyl)-4-methoxypiperidin-1-yl]pyrimidin-4-yl}-2-methyl-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine
4YX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N-[2-[4-(2-azanylethyl)-4-methoxy-piperidin-1-yl]pyrimidin-4-yl]-2-methyl-1-propan-2-yl-imidazo[4,5-c]pyridin-6-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4YX 'Create component' 2015-06-26 RCSB
4YX 'Initial release' 2015-10-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4YX C4 C 18.906 -2.799 1
4YX C5 C 17.607 -3.549 2
4YX C11 C 20.792 0.584 3
4YX C7 C 16.308 -1.299 4
4YX C8 C 17.607 -0.549 5
4YX C9 C 18.906 -1.299 6
4YX C12 C 22.259 0.893 7
4YX C13 C 19.790 1.700 8
4YX N3 N 20.326 -3.256 9
4YX C1 C 22.701 -2.049 10
4YX C2 C 21.201 -2.049 11
4YX N6 N 16.308 -2.799 12
4YX N10 N 20.326 -0.842 13
4YX N14 N 15.009 -0.549 14
4YX C15 C 13.710 -1.299 15
4YX C16 C 13.710 -2.799 16
4YX C17 C 12.411 -3.549 17
4YX N18 N 11.112 -2.799 18
4YX C19 C 11.112 -1.299 19
4YX N20 N 12.411 -0.549 20
4YX N21 N 9.813 -0.549 21
4YX C22 C 9.813 0.951 22
4YX C23 C 8.514 1.701 23
4YX C24 C 7.215 0.951 24
4YX C25 C 7.215 -0.549 25
4YX C26 C 8.514 -1.299 26
4YX C27 C 5.715 0.951 27
4YX C28 C 4.965 -0.348 28
4YX N29 N 3.465 -0.348 29
4YX O30 O 6.465 2.250 30
4YX C31 C 7.215 3.549 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4YX C28 N29 SINGLE NONE 1
4YX C28 C27 SINGLE NONE 2
4YX C23 C22 SINGLE NONE 3
4YX C23 C24 SINGLE NONE 4
4YX C22 N21 SINGLE NONE 5
4YX O30 C24 SINGLE NONE 6
4YX O30 C31 SINGLE NONE 7
4YX C24 C27 SINGLE NONE 8
4YX C24 C25 SINGLE NONE 9
4YX N18 C17 SINGLE NONE 10
4YX N18 C19 DOUBLE NONE 11
4YX C17 C16 DOUBLE NONE 12
4YX N21 C19 SINGLE NONE 13
4YX N21 C26 SINGLE NONE 14
4YX C19 N20 SINGLE NONE 15
4YX C26 C25 SINGLE NONE 16
4YX C16 C15 SINGLE NONE 17
4YX N20 C15 DOUBLE NONE 18
4YX C15 N14 SINGLE NONE 19
4YX N14 C7 SINGLE NONE 20
4YX C7 C8 DOUBLE NONE 21
4YX C7 N6 SINGLE NONE 22
4YX C8 C9 SINGLE NONE 23
4YX C12 C11 SINGLE NONE 24
4YX C11 C13 SINGLE NONE 25
4YX C11 N10 SINGLE NONE 26
4YX N6 C5 DOUBLE NONE 27
4YX C9 N10 SINGLE NONE 28
4YX C9 C4 DOUBLE NONE 29
4YX N10 C2 SINGLE NONE 30
4YX C5 C4 SINGLE NONE 31
4YX C4 N3 SINGLE NONE 32
4YX C2 N3 DOUBLE NONE 33
4YX C2 C1 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4YX MurckoScaffold S1 scaffold 'c1cc(Nc2cc3[nH]cnc3cn2)nc(N2CCCCC2)n1' InChI=1S/C15H17N7/c1-2-6-22(7-3-1)15-16-5-4-13(21-15)20-14-8-11-12(9-17-14)19-10-18-11/h4-5,8-10H,1-3,6-7H2,(H,18,19)(H,16,17,20,21) DTHWZUBAFNNXNM-UHFFFAOYSA-N
4YX imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
4YX pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
4YX pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
4YX Z54628578 F4 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4YX C4 S1 1
4YX C5 S1 1
4YX C7 S1 1
4YX C8 S1 1
4YX C9 S1 1
4YX N3 S1 1
4YX C2 S1 1
4YX N6 S1 1
4YX N10 S1 1
4YX N14 S1 1
4YX C15 S1 1
4YX C16 S1 1
4YX C17 S1 1
4YX N18 S1 1
4YX C19 S1 1
4YX N20 S1 1
4YX N21 S1 1
4YX C22 S1 1
4YX C23 S1 1
4YX C24 S1 1
4YX C25 S1 1
4YX C26 S1 1
4YX C4 F1 1
4YX C9 F1 1
4YX N10 F1 1
4YX C2 F1 1
4YX N3 F1 1
4YX C5 F2 1
4YX C4 F2 1
4YX C9 F2 1
4YX C8 F2 1
4YX C7 F2 1
4YX N6 F2 1
4YX C16 F3 1
4YX C17 F3 1
4YX N18 F3 1
4YX C19 F3 1
4YX N20 F3 1
4YX C15 F3 1
4YX C22 F4 1
4YX N21 F4 1
4YX C19 F4 1
4YX N18 F4 1
4YX C17 F4 1
4YX C16 F4 1
4YX C15 F4 1
4YX N20 F4 1
4YX C26 F4 2
4YX N21 F4 2
4YX C19 F4 2
4YX N18 F4 2
4YX C17 F4 2
4YX C16 F4 2
4YX C15 F4 2
4YX N20 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 4YX
_pdbe_chem_comp_rdkit_properties.exactmw 424.270
_pdbe_chem_comp_rdkit_properties.amw 424.553
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 227.738
_pdbe_chem_comp_rdkit_properties.tpsa 107.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.563
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.879
_pdbe_chem_comp_rdkit_properties.chi0v 14.986
_pdbe_chem_comp_rdkit_properties.chi1v 7.960
_pdbe_chem_comp_rdkit_properties.chi2v 3.613
_pdbe_chem_comp_rdkit_properties.chi3v 3.613
_pdbe_chem_comp_rdkit_properties.chi4v 2.299
_pdbe_chem_comp_rdkit_properties.chi0n 46.986
_pdbe_chem_comp_rdkit_properties.chi1n 23.801
_pdbe_chem_comp_rdkit_properties.chi2n 3.613
_pdbe_chem_comp_rdkit_properties.chi3n 3.613
_pdbe_chem_comp_rdkit_properties.chi4n 2.299
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.780
_pdbe_chem_comp_rdkit_properties.kappa1 5.231
_pdbe_chem_comp_rdkit_properties.kappa2 8.760
_pdbe_chem_comp_rdkit_properties.kappa3 4.332
_pdbe_chem_comp_rdkit_properties.Phi 1.478
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4YX UniChem ChEMBL CHEMBL3736430
4YX UniChem PDBe 4YX
4YX UniChem ZINC ZINC000222729835
4YX UniChem SureChEMBL SCHEMBL15749194
4YX UniChem PubChem 90183483
4YX UniChem BindingDb 50498999
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4YX C4 5.586 -0.792 -1.608 ETKDGv3 1
4YX C5 4.413 -1.410 -2.234 ETKDGv3 2
4YX C11 7.147 1.265 0.987 ETKDGv3 3
4YX C7 3.096 -0.559 -0.395 ETKDGv3 4
4YX C8 4.167 0.028 0.180 ETKDGv3 5
4YX C9 5.475 -0.123 -0.486 ETKDGv3 6
4YX C12 6.905 0.587 2.338 ETKDGv3 7
4YX C13 6.435 2.616 0.888 ETKDGv3 8
4YX N3 6.926 -0.785 -2.086 ETKDGv3 9
4YX C1 9.042 0.178 -1.316 ETKDGv3 10
4YX C2 7.577 -0.093 -1.198 ETKDGv3 11
4YX N6 3.255 -1.282 -1.644 ETKDGv3 12
4YX N10 6.755 0.382 -0.120 ETKDGv3 13
4YX N14 1.796 -0.413 0.198 ETKDGv3 14
4YX C15 0.666 -1.227 -0.146 ETKDGv3 15
4YX C16 0.822 -2.649 -0.527 ETKDGv3 16
4YX C17 -0.273 -3.359 -0.805 ETKDGv3 17
4YX N18 -1.568 -2.744 -0.721 ETKDGv3 18
4YX C19 -1.706 -1.497 -0.366 ETKDGv3 19
4YX N20 -0.531 -0.722 -0.059 ETKDGv3 20
4YX N21 -3.019 -0.900 -0.280 ETKDGv3 21
4YX C22 -3.153 0.533 0.021 ETKDGv3 22
4YX C23 -4.421 0.805 0.841 ETKDGv3 23
4YX C24 -5.689 0.223 0.165 ETKDGv3 24
4YX C25 -5.443 -1.303 -0.021 ETKDGv3 25
4YX C26 -4.187 -1.589 -0.851 ETKDGv3 26
4YX C27 -6.907 0.433 1.120 ETKDGv3 27
4YX C28 -7.391 1.895 1.208 ETKDGv3 28
4YX N29 -8.582 2.007 2.048 ETKDGv3 29
4YX O30 -5.855 0.918 -1.075 ETKDGv3 30
4YX C31 -6.880 0.400 -1.902 ETKDGv3 31
4YX H1 4.498 -1.955 -3.164 ETKDGv3 32
4YX H2 8.237 1.467 0.921 ETKDGv3 33
4YX H3 4.060 0.587 1.098 ETKDGv3 34
4YX H4 7.423 -0.396 2.363 ETKDGv3 35
4YX H5 7.313 1.217 3.157 ETKDGv3 36
4YX H6 5.826 0.424 2.526 ETKDGv3 37
4YX H7 5.341 2.510 1.031 ETKDGv3 38
4YX H8 6.826 3.308 1.665 ETKDGv3 39
4YX H9 6.623 3.067 -0.109 ETKDGv3 40
4YX H10 9.462 -0.328 -2.211 ETKDGv3 41
4YX H11 9.211 1.271 -1.409 ETKDGv3 42
4YX H12 9.564 -0.201 -0.413 ETKDGv3 43
4YX H13 1.638 0.379 0.863 ETKDGv3 44
4YX H14 1.793 -3.123 -0.552 ETKDGv3 45
4YX H15 -0.191 -4.402 -1.080 ETKDGv3 46
4YX H16 -2.288 0.901 0.612 ETKDGv3 47
4YX H17 -3.185 1.106 -0.931 ETKDGv3 48
4YX H18 -4.517 1.905 0.961 ETKDGv3 49
4YX H19 -4.286 0.365 1.854 ETKDGv3 50
4YX H20 -5.312 -1.779 0.977 ETKDGv3 51
4YX H21 -6.319 -1.801 -0.488 ETKDGv3 52
4YX H22 -4.331 -1.253 -1.900 ETKDGv3 53
4YX H23 -4.038 -2.689 -0.866 ETKDGv3 54
4YX H24 -6.642 0.084 2.143 ETKDGv3 55
4YX H25 -7.757 -0.207 0.799 ETKDGv3 56
4YX H26 -6.596 2.537 1.640 ETKDGv3 57
4YX H27 -7.633 2.283 0.197 ETKDGv3 58
4YX H28 -9.342 1.418 1.637 ETKDGv3 59
4YX H29 -8.363 1.629 2.998 ETKDGv3 60
4YX H31 -6.554 -0.531 -2.408 ETKDGv3 61
4YX H32 -7.085 1.141 -2.701 ETKDGv3 62
4YX H33 -7.836 0.239 -1.366 ETKDGv3 63
#