data_53G
#
_chem_comp.id 53G
_chem_comp.name N,N-dimethylquinoxaline-6-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H11 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-07-21
_chem_comp.pdbx_modified_date 2015-09-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 201.225
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 53G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5CQ7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
53G N1 N1 N 0 1 Y N N N N N 10.544 41.606 28.665 -2.175 -1.509 -0.504 N1 53G 1
53G C4 C1 C 0 1 Y N N N N N 13.963 41.489 31.084 0.250 1.727 0.319 C4 53G 2
53G C5 C2 C 0 1 Y N N N N N 12.970 42.378 31.354 -1.092 1.844 0.486 C5 53G 3
53G C6 C3 C 0 1 Y N N N N N 11.810 42.445 30.562 -1.935 0.751 0.211 C6 53G 4
53G C7 C4 C 0 1 Y N N N N N 11.685 41.573 29.442 -1.374 -0.470 -0.243 C7 53G 5
53G C8 C5 C 0 1 Y N N N N N 12.737 40.630 29.152 0.017 -0.571 -0.410 C8 53G 6
53G C10 C6 C 0 1 Y N N N N N 9.790 43.464 30.026 -4.026 -0.186 0.106 C10 53G 7
53G O O1 O 0 1 N N N N N N 16.066 39.766 30.175 2.878 1.267 -0.944 O 53G 8
53G C2 C7 C 0 1 N N N N N N 14.971 39.544 29.883 2.283 0.422 -0.304 C2 53G 9
53G N N2 N 0 1 N N N N N N 14.622 38.248 29.675 2.959 -0.606 0.247 N 53G 10
53G C1 C8 C 0 1 N N N N N N 13.363 37.514 29.665 4.418 -0.669 0.132 C1 53G 11
53G C C9 C 0 1 N N N N N N 15.839 37.421 29.525 2.234 -1.661 0.959 C 53G 12
53G C3 C10 C 0 1 Y N N N N N 13.886 40.646 29.932 0.818 0.522 -0.130 C3 53G 13
53G C9 C11 C 0 1 Y N N N N N 9.599 42.525 28.959 -3.473 -1.388 -0.340 C9 53G 14
53G N2 N3 N 0 1 Y N N N N N 10.829 43.387 30.834 -3.259 0.848 0.370 N2 53G 15
53G H1 H1 H 0 1 N N N N N N 14.815 41.419 31.744 0.889 2.571 0.533 H1 53G 16
53G H2 H2 H 0 1 N N N N N N 13.075 43.047 32.195 -1.514 2.776 0.832 H2 53G 17
53G H3 H3 H 0 1 N N N N N N 12.633 39.923 28.342 0.458 -1.495 -0.754 H3 53G 18
53G H4 H4 H 0 1 N N N N N N 9.066 44.252 30.171 -5.095 -0.105 0.236 H4 53G 19
53G H5 H5 H 0 1 N N N N N N 12.526 38.218 29.782 4.871 -0.155 0.980 H5 53G 20
53G H6 H6 H 0 1 N N N N N N 13.259 36.977 28.710 4.737 -1.711 0.126 H6 53G 21
53G H7 H7 H 0 1 N N N N N N 13.353 36.792 30.495 4.731 -0.187 -0.794 H7 53G 22
53G H8 H8 H 0 1 N N N N N N 16.728 38.069 29.546 1.168 -1.433 0.960 H8 53G 23
53G H9 H9 H 0 1 N N N N N N 15.894 36.697 30.351 2.401 -2.617 0.461 H9 53G 24
53G H10 H10 H 0 1 N N N N N N 15.800 36.882 28.567 2.593 -1.719 1.986 H10 53G 25
53G H11 H11 H 0 1 N N N N N N 8.686 42.553 28.382 -4.118 -2.228 -0.551 H11 53G 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
53G N1 C9 SING Y N 1
53G N1 C7 DOUB Y N 2
53G C9 C10 DOUB Y N 3
53G C8 C7 SING Y N 4
53G C8 C3 DOUB Y N 5
53G C7 C6 SING Y N 6
53G C N SING N N 7
53G C1 N SING N N 8
53G N C2 SING N N 9
53G C2 C3 SING N N 10
53G C2 O DOUB N N 11
53G C3 C4 SING Y N 12
53G C10 N2 SING Y N 13
53G C6 N2 DOUB Y N 14
53G C6 C5 SING Y N 15
53G C4 C5 DOUB Y N 16
53G C4 H1 SING N N 17
53G C5 H2 SING N N 18
53G C8 H3 SING N N 19
53G C10 H4 SING N N 20
53G C1 H5 SING N N 21
53G C1 H6 SING N N 22
53G C1 H7 SING N N 23
53G C H8 SING N N 24
53G C H9 SING N N 25
53G C H10 SING N N 26
53G C9 H11 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
53G SMILES ACDLabs 12.01 n1ccnc2ccc(cc12)C(=O)N(C)C
53G InChI InChI 1.03 InChI=1S/C11H11N3O/c1-14(2)11(15)8-3-4-9-10(7-8)13-6-5-12-9/h3-7H,1-2H3
53G InChIKey InChI 1.03 HQOVESVNZPVFDO-UHFFFAOYSA-N
53G SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)c1ccc2nccnc2c1
53G SMILES CACTVS 3.385 CN(C)C(=O)c1ccc2nccnc2c1
53G SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CN(C)C(=O)c1ccc2c(c1)nccn2
53G SMILES "OpenEye OEToolkits" 1.9.2 CN(C)C(=O)c1ccc2c(c1)nccn2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
53G "SYSTEMATIC NAME" ACDLabs 12.01 N,N-dimethylquinoxaline-6-carboxamide
53G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N,N-dimethylquinoxaline-6-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
53G 'Create component' 2015-07-21 EBI
53G 'Initial release' 2015-09-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
53G N1 N 10.836 -0.828 1
53G C4 C 6.897 1.474 2
53G C5 C 8.196 2.224 3
53G C6 C 9.495 1.474 4
53G C7 C 9.495 -0.026 5
53G C8 C 8.196 -0.776 6
53G C10 C 12.195 1.505 7
53G O O 5.598 -2.276 8
53G C2 C 5.598 -0.776 9
53G N N 4.299 -0.026 10
53G C1 C 4.299 1.474 11
53G C C 3.000 -0.776 12
53G C3 C 6.897 -0.026 13
53G C9 C 12.195 -0.057 14
53G N2 N 10.836 2.276 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
53G N1 C9 DOUBLE NONE 1
53G N1 C7 SINGLE NONE 2
53G C9 C10 SINGLE NONE 3
53G C8 C7 DOUBLE NONE 4
53G C8 C3 SINGLE NONE 5
53G C7 C6 SINGLE NONE 6
53G C N SINGLE NONE 7
53G C1 N SINGLE NONE 8
53G N C2 SINGLE NONE 9
53G C2 C3 SINGLE NONE 10
53G C2 O DOUBLE NONE 11
53G C3 C4 DOUBLE NONE 12
53G C10 N2 DOUBLE NONE 13
53G C6 N2 SINGLE NONE 14
53G C6 C5 DOUBLE NONE 15
53G C4 C5 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
53G MurckoScaffold S1 scaffold c1ccc2nccnc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)9-5-6-10-8/h1-6H XSCHRSMBECNVNS-UHFFFAOYSA-N
53G amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
53G phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
53G pyrazine F3 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
53G quinoxaline F4 fragment c1ccc2nccnc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)9-5-6-10-8/h1-6H XSCHRSMBECNVNS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
53G N1 S1 1
53G C4 S1 1
53G C5 S1 1
53G C6 S1 1
53G C7 S1 1
53G C8 S1 1
53G C10 S1 1
53G C3 S1 1
53G C9 S1 1
53G N2 S1 1
53G N F1 1
53G C2 F1 1
53G O F1 1
53G C3 F1 1
53G C4 F2 1
53G C3 F2 1
53G C8 F2 1
53G C7 F2 1
53G C6 F2 1
53G C5 F2 1
53G C6 F3 1
53G C7 F3 1
53G N1 F3 1
53G C9 F3 1
53G C10 F3 1
53G N2 F3 1
53G C4 F4 1
53G C3 F4 1
53G C8 F4 1
53G C7 F4 1
53G C6 F4 1
53G C5 F4 1
53G N2 F4 1
53G C10 F4 1
53G C9 F4 1
53G N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 53G
_pdbe_chem_comp_rdkit_properties.exactmw 201.090
_pdbe_chem_comp_rdkit_properties.amw 201.229
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.182
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 103.023
_pdbe_chem_comp_rdkit_properties.tpsa 46.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.848
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.084
_pdbe_chem_comp_rdkit_properties.chi0v 7.250
_pdbe_chem_comp_rdkit_properties.chi1v 3.769
_pdbe_chem_comp_rdkit_properties.chi2v 1.576
_pdbe_chem_comp_rdkit_properties.chi3v 1.576
_pdbe_chem_comp_rdkit_properties.chi4v 0.932
_pdbe_chem_comp_rdkit_properties.chi0n 18.250
_pdbe_chem_comp_rdkit_properties.chi1n 9.269
_pdbe_chem_comp_rdkit_properties.chi2n 1.576
_pdbe_chem_comp_rdkit_properties.chi3n 1.576
_pdbe_chem_comp_rdkit_properties.chi4n 0.932
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.970
_pdbe_chem_comp_rdkit_properties.kappa1 3.010
_pdbe_chem_comp_rdkit_properties.kappa2 3.648
_pdbe_chem_comp_rdkit_properties.kappa3 1.786
_pdbe_chem_comp_rdkit_properties.Phi 0.732
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
53G UniChem PDBe 53G
53G UniChem ZINC ZINC000013466583
53G UniChem eMolecules 29805933
53G UniChem PubChem 24229800
53G UniChem 'EPA CompTox Dashboard' DTXSID70640497
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
53G N1 2.567 -0.890 -1.449 ETKDGv3 1
53G C4 0.156 0.970 1.508 ETKDGv3 2
53G C5 1.623 1.165 1.502 ETKDGv3 3
53G C6 2.364 0.577 0.557 ETKDGv3 4
53G C7 1.727 -0.268 -0.471 ETKDGv3 5
53G C8 0.400 -0.447 -0.473 ETKDGv3 6
53G C10 4.498 0.145 -0.404 ETKDGv3 7
53G O -2.521 0.022 1.675 ETKDGv3 8
53G C2 -1.908 0.017 0.572 ETKDGv3 9
53G N -2.649 -0.203 -0.644 ETKDGv3 10
53G C1 -3.799 -1.108 -0.627 ETKDGv3 11
53G C -2.313 0.505 -1.882 ETKDGv3 12
53G C3 -0.440 0.216 0.561 ETKDGv3 13
53G C9 3.857 -0.710 -1.435 ETKDGv3 14
53G N2 3.787 0.734 0.515 ETKDGv3 15
53G H1 -0.429 1.459 2.278 ETKDGv3 16
53G H2 2.087 1.782 2.261 ETKDGv3 17
53G H3 -0.053 -1.090 -1.216 ETKDGv3 18
53G H4 5.571 0.279 -0.416 ETKDGv3 19
53G H5 -4.575 -0.719 0.066 ETKDGv3 20
53G H6 -4.246 -1.203 -1.640 ETKDGv3 21
53G H7 -3.476 -2.115 -0.290 ETKDGv3 22
53G H8 -1.946 -0.219 -2.639 ETKDGv3 23
53G H9 -3.216 1.016 -2.277 ETKDGv3 24
53G H10 -1.536 1.278 -1.708 ETKDGv3 25
53G H11 4.471 -1.190 -2.185 ETKDGv3 26
#