data_54U
#
_chem_comp.id 54U
_chem_comp.name 1-[4-(4-hydroxyphenyl)piperazin-1-yl]ethanone
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H16 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-07-24
_chem_comp.pdbx_modified_date 2015-09-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 220.268
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 54U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5CUA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
54U C10 C1 C 0 1 Y N N N N N 9.356 41.690 28.940 -2.189 1.185 -0.486 C10 54U 1
54U C13 C2 C 0 1 Y N N N N N 8.798 44.164 30.184 -3.298 -1.172 0.461 C13 54U 2
54U C01 C3 C 0 1 N N N N N N 15.341 38.131 29.764 4.596 1.087 0.952 C01 54U 3
54U C02 C4 C 0 1 N N N N N N 15.357 39.593 30.116 3.924 -0.113 0.337 C02 54U 4
54U N03 N1 N 0 1 N N N N N N 14.150 40.336 30.055 2.735 0.025 -0.283 N03 54U 5
54U C04 C5 C 0 1 N N N N N N 14.090 41.704 30.392 2.062 -1.133 -0.890 C04 54U 6
54U C05 C6 C 0 1 N N N N N N 12.728 42.406 30.344 0.619 -1.181 -0.376 C05 54U 7
54U N06 N2 N 0 1 N N N N N N 11.582 41.609 29.953 -0.029 0.114 -0.624 N06 54U 8
54U C07 C7 C 0 1 N N N N N N 11.949 40.580 29.023 0.634 1.192 0.122 C07 54U 9
54U C08 C8 C 0 1 N N N N N N 12.959 39.676 29.684 2.075 1.336 -0.366 C08 54U 10
54U C09 C9 C 0 1 Y N N N N N 10.307 42.272 29.757 -1.394 0.059 -0.319 C09 54U 11
54U C11 C10 C 0 1 Y N N N N N 8.112 42.327 28.730 -3.534 1.132 -0.179 C11 54U 12
54U C12 C11 C 0 1 Y N N N N N 7.841 43.574 29.361 -4.091 -0.047 0.295 C12 54U 13
54U C14 C12 C 0 1 Y N N N N N 10.036 43.530 30.393 -1.953 -1.122 0.150 C14 54U 14
54U O15 O1 O 0 1 N N N N N N 6.593 44.212 29.152 -5.416 -0.099 0.597 O15 54U 15
54U O16 O2 O 0 1 N N N N N N 16.379 40.124 30.437 4.452 -1.203 0.401 O16 54U 16
54U H1 H1 H 0 1 N N N N N N 9.564 40.745 28.460 -1.754 2.104 -0.851 H1 54U 17
54U H2 H2 H 0 1 N N N N N N 8.589 45.110 30.662 -3.734 -2.091 0.826 H2 54U 18
54U H3 H3 H 0 1 N N N N N N 16.357 37.719 29.859 5.540 0.783 1.405 H3 54U 19
54U H4 H4 H 0 1 N N N N N N 14.664 37.597 30.447 4.787 1.832 0.180 H4 54U 20
54U H5 H5 H 0 1 N N N N N N 14.990 38.007 28.729 3.948 1.515 1.717 H5 54U 21
54U H6 H6 H 0 1 N N N N N N 14.471 41.803 31.419 2.061 -1.030 -1.975 H6 54U 22
54U H7 H7 H 0 1 N N N N N N 12.810 43.239 29.630 0.072 -1.967 -0.899 H7 54U 23
54U H8 H8 H 0 1 N N N N N N 12.390 41.033 28.123 0.101 2.130 -0.038 H8 54U 24
54U H9 H9 H 0 1 N N N N N N 11.058 39.999 28.742 0.632 0.948 1.184 H9 54U 25
54U H10 H10 H 0 1 N N N N N N 12.503 39.247 30.588 2.603 2.055 0.261 H10 54U 26
54U H11 H11 H 0 1 N N N N N N 13.213 38.867 28.983 2.079 1.677 -1.401 H11 54U 27
54U H12 H12 H 0 1 N N N N N N 7.370 41.869 28.093 -4.153 2.007 -0.308 H12 54U 28
54U H13 H13 H 0 1 N N N N N N 10.779 43.988 31.029 -1.336 -1.999 0.279 H13 54U 29
54U H14 H14 H 0 1 N N N N N N 6.569 45.028 29.638 -5.979 -0.363 -0.144 H14 54U 30
54U H15 H15 H 0 1 N N N N N N 14.757 42.239 29.700 2.583 -2.049 -0.609 H15 54U 31
54U H16 H16 H 0 1 N N N N N N 12.526 42.804 31.349 0.620 -1.389 0.694 H16 54U 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
54U C11 C10 DOUB Y N 1
54U C11 C12 SING Y N 2
54U C10 C09 SING Y N 3
54U C07 C08 SING N N 4
54U C07 N06 SING N N 5
54U O15 C12 SING N N 6
54U C12 C13 DOUB Y N 7
54U C08 N03 SING N N 8
54U C09 N06 SING N N 9
54U C09 C14 DOUB Y N 10
54U C01 C02 SING N N 11
54U N06 C05 SING N N 12
54U N03 C02 SING N N 13
54U N03 C04 SING N N 14
54U C02 O16 DOUB N N 15
54U C13 C14 SING Y N 16
54U C05 C04 SING N N 17
54U C10 H1 SING N N 18
54U C13 H2 SING N N 19
54U C01 H3 SING N N 20
54U C01 H4 SING N N 21
54U C01 H5 SING N N 22
54U C04 H6 SING N N 23
54U C05 H7 SING N N 24
54U C07 H8 SING N N 25
54U C07 H9 SING N N 26
54U C08 H10 SING N N 27
54U C08 H11 SING N N 28
54U C11 H12 SING N N 29
54U C14 H13 SING N N 30
54U O15 H14 SING N N 31
54U C04 H15 SING N N 32
54U C05 H16 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
54U SMILES ACDLabs 12.01 c2c(N1CCN(C(C)=O)CC1)ccc(c2)O
54U InChI InChI 1.03 InChI=1S/C12H16N2O2/c1-10(15)13-6-8-14(9-7-13)11-2-4-12(16)5-3-11/h2-5,16H,6-9H2,1H3
54U InChIKey InChI 1.03 AGVNLFCRZULMKK-UHFFFAOYSA-N
54U SMILES_CANONICAL CACTVS 3.385 CC(=O)N1CCN(CC1)c2ccc(O)cc2
54U SMILES CACTVS 3.385 CC(=O)N1CCN(CC1)c2ccc(O)cc2
54U SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CC(=O)N1CCN(CC1)c2ccc(cc2)O
54U SMILES "OpenEye OEToolkits" 1.9.2 CC(=O)N1CCN(CC1)c2ccc(cc2)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
54U "SYSTEMATIC NAME" ACDLabs 12.01 1-[4-(4-hydroxyphenyl)piperazin-1-yl]ethanone
54U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1-[4-(4-hydroxyphenyl)piperazin-1-yl]ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
54U 'Create component' 2015-07-24 RCSB
54U 'Initial release' 2015-09-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
54U C10 C 3.000 -1.643 1
54U C13 C 5.598 -3.143 2
54U C01 C 3.000 5.857 3
54U C02 C 4.299 5.107 4
54U N03 N 4.299 3.607 5
54U C04 C 5.598 2.857 6
54U C05 C 5.598 1.357 7
54U N06 N 4.299 0.608 8
54U C07 C 3.000 1.357 9
54U C08 C 3.000 2.857 10
54U C09 C 4.299 -0.892 11
54U C11 C 3.000 -3.143 12
54U C12 C 4.299 -3.893 13
54U C14 C 5.598 -1.643 14
54U O15 O 4.299 -5.393 15
54U O16 O 5.598 5.857 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
54U C11 C10 DOUBLE NONE 1
54U C11 C12 SINGLE NONE 2
54U C10 C09 SINGLE NONE 3
54U C07 C08 SINGLE NONE 4
54U C07 N06 SINGLE NONE 5
54U O15 C12 SINGLE NONE 6
54U C12 C13 DOUBLE NONE 7
54U C08 N03 SINGLE NONE 8
54U C09 N06 SINGLE NONE 9
54U C09 C14 DOUBLE NONE 10
54U C01 C02 SINGLE NONE 11
54U N06 C05 SINGLE NONE 12
54U N03 C02 SINGLE NONE 13
54U N03 C04 SINGLE NONE 14
54U C02 O16 DOUBLE NONE 15
54U C13 C14 SINGLE NONE 16
54U C05 C04 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
54U MurckoScaffold S1 scaffold c1ccc(N2CCNCC2)cc1 InChI=1S/C10H14N2/c1-2-4-10(5-3-1)12-8-6-11-7-9-12/h1-5,11H,6-9H2 YZTJYBJCZXZGCT-UHFFFAOYSA-N
54U amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
54U phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
54U piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
54U Z56899148 F4 fragment Oc1ccc(N2CCNCC2)cc1 InChI=1S/C10H14N2O/c13-10-3-1-9(2-4-10)12-7-5-11-6-8-12/h1-4,11,13H,5-8H2 GPEOAEVZTOQXLG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
54U C10 S1 1
54U C13 S1 1
54U N03 S1 1
54U C04 S1 1
54U C05 S1 1
54U N06 S1 1
54U C07 S1 1
54U C08 S1 1
54U C09 S1 1
54U C11 S1 1
54U C12 S1 1
54U C14 S1 1
54U N03 F1 1
54U C02 F1 1
54U O16 F1 1
54U C01 F1 1
54U C10 F2 1
54U C11 F2 1
54U C12 F2 1
54U C13 F2 1
54U C14 F2 1
54U C09 F2 1
54U N03 F3 1
54U C08 F3 1
54U C07 F3 1
54U N06 F3 1
54U C05 F3 1
54U C04 F3 1
54U O15 F4 1
54U C12 F4 1
54U C11 F4 1
54U C10 F4 1
54U C09 F4 1
54U C14 F4 1
54U C13 F4 1
54U N06 F4 1
54U C07 F4 1
54U C08 F4 1
54U N03 F4 1
54U C04 F4 1
54U C05 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 54U
_pdbe_chem_comp_rdkit_properties.exactmw 220.121
_pdbe_chem_comp_rdkit_properties.amw 220.272
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 117.657
_pdbe_chem_comp_rdkit_properties.tpsa 43.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.218
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.140
_pdbe_chem_comp_rdkit_properties.chi0v 7.711
_pdbe_chem_comp_rdkit_properties.chi1v 4.000
_pdbe_chem_comp_rdkit_properties.chi2v 1.563
_pdbe_chem_comp_rdkit_properties.chi3v 1.563
_pdbe_chem_comp_rdkit_properties.chi4v 0.875
_pdbe_chem_comp_rdkit_properties.chi0n 23.711
_pdbe_chem_comp_rdkit_properties.chi1n 11.908
_pdbe_chem_comp_rdkit_properties.chi2n 1.563
_pdbe_chem_comp_rdkit_properties.chi3n 1.563
_pdbe_chem_comp_rdkit_properties.chi4n 0.875
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 2.578
_pdbe_chem_comp_rdkit_properties.kappa2 4.429
_pdbe_chem_comp_rdkit_properties.kappa3 2.267
_pdbe_chem_comp_rdkit_properties.Phi 0.714
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
54U UniChem ChEMBL CHEMBL202608
54U UniChem PDBe 54U
54U UniChem ZINC ZINC000000105363
54U UniChem eMolecules 515890
54U UniChem 'PubChem TPHARMA' 15900319
54U UniChem ACTor 67914-60-7
54U UniChem Nikkaji J287.743K
54U UniChem 'EPA CompTox Dashboard' DTXSID3057804
54U UniChem ChemicalBook CB4329307
54U UniChem SureChEMBL SCHEMBL1128293
54U UniChem PubChem 712441
54U UniChem Mcule MCULE-8797100588
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
54U C10 2.340 1.356 -0.050 ETKDGv3 1
54U C13 3.956 -0.707 0.979 ETKDGv3 2
54U C01 -4.793 0.087 0.807 ETKDGv3 3
54U C02 -3.925 -0.089 -0.403 ETKDGv3 4
54U N03 -2.499 -0.289 -0.284 ETKDGv3 5
54U C04 -1.903 -0.603 1.026 ETKDGv3 6
54U C05 -0.453 -1.085 0.896 ETKDGv3 7
54U N06 0.321 -0.189 0.024 ETKDGv3 8
54U C07 -0.306 0.391 -1.174 ETKDGv3 9
54U C08 -1.652 -0.271 -1.484 ETKDGv3 10
54U C09 1.728 0.037 0.263 ETKDGv3 11
54U C11 3.646 1.566 0.155 ETKDGv3 12
54U C12 4.497 0.484 0.696 ETKDGv3 13
54U C14 2.515 -0.943 0.751 ETKDGv3 14
54U O15 5.856 0.696 0.913 ETKDGv3 15
54U O16 -4.469 -0.082 -1.540 ETKDGv3 16
54U H1 1.732 2.164 -0.436 ETKDGv3 17
54U H2 4.571 -1.506 1.373 ETKDGv3 18
54U H3 -4.351 0.847 1.485 ETKDGv3 19
54U H4 -5.807 0.432 0.510 ETKDGv3 20
54U H5 -4.890 -0.879 1.344 ETKDGv3 21
54U H6 -2.489 -1.404 1.526 ETKDGv3 22
54U H7 -0.438 -2.112 0.471 ETKDGv3 23
54U H8 0.364 0.257 -2.052 ETKDGv3 24
54U H9 -0.469 1.478 -1.014 ETKDGv3 25
54U H10 -1.487 -1.314 -1.831 ETKDGv3 26
54U H11 -2.135 0.297 -2.308 ETKDGv3 27
54U H12 4.079 2.532 -0.071 ETKDGv3 28
54U H13 2.114 -1.925 0.966 ETKDGv3 29
54U H14 6.287 1.589 0.706 ETKDGv3 30
54U H15 -1.928 0.307 1.664 ETKDGv3 31
54U H16 -0.007 -1.120 1.914 ETKDGv3 32
#