data_564
#
_chem_comp.id 564
_chem_comp.name "6-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H26 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms CD564
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-08-08
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 386.483
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 564
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FCY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
564 C1 C1 C 0 1 N N N N N N 34.633 18.379 88.337 1.082 -0.317 6.899 C1 564 1
564 C2 C2 C 0 1 Y N N N N N 35.552 17.441 87.713 0.693 -0.217 5.478 C2 564 2
564 C3 C3 C 0 1 Y N N N N N 35.622 16.112 88.253 1.664 -0.390 4.475 C3 564 3
564 C4 C4 C 0 1 Y N N N N N 36.506 15.212 87.669 1.330 -0.302 3.162 C4 564 4
564 C5 C5 C 0 1 Y N N N N N 37.313 15.574 86.559 -0.000 -0.036 2.789 C5 564 5
564 C10 C10 C 0 1 Y N N N N N 37.234 16.870 86.053 -0.989 0.139 3.791 C10 564 6
564 C11 C11 C 0 1 Y N N N N N 36.356 17.805 86.630 -0.625 0.045 5.142 C11 564 7
564 C15 C15 C 0 1 Y N N N N N 42.780 13.863 81.847 -0.322 -0.196 -3.595 C15 564 8
564 C16 C16 C 0 1 N N N N N N 43.192 13.000 80.664 -0.665 -0.861 -4.902 C16 564 9
564 C17 C17 C 0 1 N N N N N N 44.605 13.308 80.211 0.301 -0.421 -5.999 C17 564 10
564 C18 C18 C 0 1 N N N N N N 45.002 14.727 80.269 1.733 -0.614 -5.487 C18 564 11
564 C19 C19 C 0 1 N N N N N N 44.877 15.337 81.641 1.998 0.419 -4.395 C19 564 12
564 C20 C20 C 0 1 Y N N N N N 43.540 14.940 82.310 0.903 0.387 -3.359 C20 564 13
564 C23 C23 C 0 1 N N N N N N 42.211 13.296 79.520 -2.091 -0.478 -5.304 C23 564 14
564 C24 C24 C 0 1 N N N N N N 43.164 11.534 81.031 -0.579 -2.379 -4.733 C24 564 15
564 C25 C25 C 0 1 N N N N N N 44.857 16.825 81.331 3.337 0.111 -3.723 C25 564 16
564 C26 C26 C 0 1 N N N N N N 46.030 15.021 82.606 2.057 1.813 -5.023 C26 564 17
564 O1 O1 O 0 1 N N N N N N 34.188 18.116 89.416 0.247 -0.168 7.769 O1 564 18
564 O2 O2 O 0 1 N N N N N N 34.340 19.452 87.662 2.362 -0.573 7.231 O2 564 19
564 C6 C6 C 0 1 Y N N N N N 38.200 14.650 85.949 -0.365 0.052 1.437 C6 564 20
564 C7 C7 C 0 1 Y N N N N N 39.009 14.988 84.870 -1.683 0.320 1.102 C7 564 21
564 C8 C8 C 0 1 Y N N N N N 38.887 16.313 84.390 -2.654 0.492 2.106 C8 564 22
564 C9 C9 C 0 1 Y N N N N N 38.031 17.234 84.956 -2.320 0.405 3.418 C9 564 23
564 C13 C13 C 0 1 Y N N N N N 41.155 14.329 83.598 -1.035 0.409 -1.371 C13 564 24
564 C14 C14 C 0 1 Y N N N N N 41.588 13.566 82.499 -1.292 -0.185 -2.605 C14 564 25
564 C21 C21 C 0 1 Y N N N N N 43.115 15.696 83.400 1.164 0.981 -2.129 C21 564 26
564 C22 C22 C 0 1 Y N N N N N 41.966 15.378 84.003 0.210 0.996 -1.138 C22 564 27
564 C12 C12 C 0 1 N N N N N N 39.917 13.991 84.245 -2.072 0.419 -0.319 C12 564 28
564 O3 O3 O 0 1 N N N N N N 39.514 12.797 84.310 -3.246 0.510 -0.623 O3 564 29
564 H3 H3 H 0 1 N N N N N N 35.003 15.786 89.106 2.687 -0.594 4.753 H3 564 30
564 H4 H4 H 0 1 N N N N N N 36.568 14.195 88.092 2.087 -0.436 2.403 H4 564 31
564 H11 H11 H 0 1 N N N N N N 36.297 18.831 86.230 -1.367 0.177 5.916 H11 564 32
564 H171 1H17 H 0 0 N N N N N N 45.331 12.686 80.784 0.134 0.630 -6.236 H171 564 33
564 H172 2H17 H 0 0 N N N N N N 44.769 12.909 79.182 0.144 -1.027 -6.892 H172 564 34
564 H181 1H18 H 0 0 N N N N N N 46.034 14.862 79.871 2.438 -0.472 -6.306 H181 564 35
564 H182 2H18 H 0 0 N N N N N N 44.432 15.325 79.519 1.844 -1.618 -5.077 H182 564 36
564 H231 1H23 H 0 0 N N N N N N 42.513 12.663 78.652 -2.785 -0.791 -4.523 H231 564 37
564 H232 2H23 H 0 0 N N N N N N 41.144 13.154 79.812 -2.155 0.601 -5.434 H232 564 38
564 H233 3H23 H 0 0 N N N N N N 42.149 14.380 79.268 -2.351 -0.974 -6.239 H233 564 39
564 H241 1H24 H 0 0 N N N N N N 43.466 10.901 80.163 -1.268 -2.697 -3.951 H241 564 40
564 H242 2H24 H 0 0 N N N N N N 43.786 11.322 81.931 -0.846 -2.865 -5.672 H242 564 41
564 H243 3H24 H 0 0 N N N N N N 42.171 11.229 81.437 0.437 -2.656 -4.456 H243 564 42
564 H251 1H25 H 0 0 N N N N N N 44.764 17.276 82.346 3.534 0.853 -2.949 H251 564 43
564 H252 2H25 H 0 0 N N N N N N 45.721 17.192 80.729 3.299 -0.881 -3.274 H252 564 44
564 H253 3H25 H 0 0 N N N N N N 44.076 17.143 80.601 4.133 0.143 -4.468 H253 564 45
564 H261 1H26 H 0 0 N N N N N N 45.937 15.472 83.621 2.255 2.553 -4.248 H261 564 46
564 H262 2H26 H 0 0 N N N N N N 46.169 13.917 82.688 2.854 1.843 -5.767 H262 564 47
564 H263 3H26 H 0 0 N N N N N N 47.004 15.308 82.146 1.104 2.036 -5.503 H263 564 48
564 HO2 HO2 H 0 1 N N N N N N 33.739 20.064 88.069 2.617 -0.638 8.162 HO2 564 49
564 H6 H6 H 0 1 N N N N N N 38.263 13.617 86.332 0.375 -0.083 0.663 H6 564 50
564 H8 H8 H 0 1 N N N N N N 39.491 16.645 83.529 -3.677 0.696 1.828 H8 564 51
564 H9 H9 H 0 1 N N N N N N 37.984 18.252 84.535 -3.076 0.540 4.177 H9 564 52
564 H14 H14 H 0 1 N N N N N N 40.980 12.717 82.141 -2.254 -0.640 -2.791 H14 564 53
564 H21 H21 H 0 1 N N N N N N 43.692 16.552 83.788 2.127 1.436 -1.949 H21 564 54
564 H22 H22 H 0 1 N N N N N N 41.677 16.002 84.864 0.423 1.459 -0.185 H22 564 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
564 C1 C2 SING N N 1
564 C1 O1 DOUB N N 2
564 C1 O2 SING N N 3
564 C2 C3 DOUB Y N 4
564 C2 C11 SING Y N 5
564 C3 C4 SING Y N 6
564 C3 H3 SING N N 7
564 C4 C5 DOUB Y N 8
564 C4 H4 SING N N 9
564 C5 C10 SING Y N 10
564 C5 C6 SING Y N 11
564 C10 C11 DOUB Y N 12
564 C10 C9 SING Y N 13
564 C11 H11 SING N N 14
564 C15 C16 SING N N 15
564 C15 C20 DOUB Y N 16
564 C15 C14 SING Y N 17
564 C16 C17 SING N N 18
564 C16 C23 SING N N 19
564 C16 C24 SING N N 20
564 C17 C18 SING N N 21
564 C17 H171 SING N N 22
564 C17 H172 SING N N 23
564 C18 C19 SING N N 24
564 C18 H181 SING N N 25
564 C18 H182 SING N N 26
564 C19 C20 SING N N 27
564 C19 C25 SING N N 28
564 C19 C26 SING N N 29
564 C20 C21 SING Y N 30
564 C23 H231 SING N N 31
564 C23 H232 SING N N 32
564 C23 H233 SING N N 33
564 C24 H241 SING N N 34
564 C24 H242 SING N N 35
564 C24 H243 SING N N 36
564 C25 H251 SING N N 37
564 C25 H252 SING N N 38
564 C25 H253 SING N N 39
564 C26 H261 SING N N 40
564 C26 H262 SING N N 41
564 C26 H263 SING N N 42
564 O2 HO2 SING N N 43
564 C6 C7 DOUB Y N 44
564 C6 H6 SING N N 45
564 C7 C8 SING Y N 46
564 C7 C12 SING N N 47
564 C8 C9 DOUB Y N 48
564 C8 H8 SING N N 49
564 C9 H9 SING N N 50
564 C13 C14 DOUB Y N 51
564 C13 C22 SING Y N 52
564 C13 C12 SING N N 53
564 C14 H14 SING N N 54
564 C21 C22 DOUB Y N 55
564 C21 H21 SING N N 56
564 C22 H22 SING N N 57
564 C12 O3 DOUB N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
564 SMILES ACDLabs 10.04 O=C(O)c2ccc1cc(ccc1c2)C(=O)c3ccc4c(c3)C(CCC4(C)C)(C)C
564 SMILES_CANONICAL CACTVS 3.341 CC1(C)CCC(C)(C)c2cc(ccc12)C(=O)c3ccc4cc(ccc4c3)C(O)=O
564 SMILES CACTVS 3.341 CC1(C)CCC(C)(C)c2cc(ccc12)C(=O)c3ccc4cc(ccc4c3)C(O)=O
564 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1(CCC(c2c1ccc(c2)C(=O)c3ccc4cc(ccc4c3)C(=O)O)(C)C)C
564 SMILES "OpenEye OEToolkits" 1.5.0 CC1(CCC(c2c1ccc(c2)C(=O)c3ccc4cc(ccc4c3)C(=O)O)(C)C)C
564 InChI InChI 1.03 InChI=1S/C26H26O3/c1-25(2)11-12-26(3,4)22-15-19(9-10-21(22)25)23(27)18-7-5-17-14-20(24(28)29)8-6-16(17)13-18/h5-10,13-15H,11-12H2,1-4H3,(H,28,29)
564 InChIKey InChI 1.03 RWYREGSYPCNZTL-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
564 "SYSTEMATIC NAME" ACDLabs 10.04 "6-[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]naphthalene-2-carboxylic acid"
564 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-[(5,5,8,8-tetramethyl-6,7-dihydronaphthalen-2-yl)carbonyl]naphthalene-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
564 'Create component' 2000-08-08 RCSB
564 'Modify descriptor' 2011-06-04 RCSB
564 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 564
_pdbx_chem_comp_synonyms.name CD564
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 564
_pdbe_chem_comp_drugbank_details.drugbank_id DB02741
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name CD564
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 564
_pdbe_chem_comp_synonyms.name CD564
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 564
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02741
_pdbe_chem_comp_drugbank_classification.parent Benzophenones
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as benzophenones. These are organic compounds containing a ketone attached to two phenyl groups.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 564
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02741
_pdbe_chem_comp_drugbank_targets.name 'Retinoic acid receptor gamma'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P13631
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
564 C1 C 17.499 1.503 1
564 C2 C 16.200 0.753 2
564 C3 C 16.194 -0.809 3
564 C4 C 14.832 -1.575 4
564 C5 C 13.494 -0.768 5
564 C10 C 13.500 0.732 6
564 C11 C 14.844 1.529 7
564 C15 C 5.598 -0.717 8
564 C16 C 4.299 -1.467 9
564 C17 C 3.000 -0.717 10
564 C18 C 3.000 0.783 11
564 C19 C 4.299 1.533 12
564 C20 C 5.598 0.783 13
564 C23 C 3.549 -2.766 14
564 C24 C 5.049 -2.766 15
564 C25 C 3.549 2.832 16
564 C26 C 5.049 2.832 17
564 O1 O 18.798 0.753 18
564 O2 O 17.499 3.003 19
564 C6 C 12.192 -1.513 20
564 C7 C 10.896 -0.758 21
564 C8 C 10.902 0.742 22
564 C9 C 12.204 1.487 23
564 C13 C 8.298 -0.748 24
564 C14 C 6.939 -1.519 25
564 C21 C 6.939 1.585 26
564 C22 C 8.298 0.815 27
564 C12 C 9.594 -1.503 28
564 O3 O 9.588 -3.003 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
564 C1 C2 SINGLE NONE 1
564 C1 O1 DOUBLE NONE 2
564 C1 O2 SINGLE NONE 3
564 C2 C3 DOUBLE NONE 4
564 C2 C11 SINGLE NONE 5
564 C3 C4 SINGLE NONE 6
564 C4 C5 DOUBLE NONE 7
564 C5 C10 SINGLE NONE 8
564 C5 C6 SINGLE NONE 9
564 C10 C11 DOUBLE NONE 10
564 C10 C9 SINGLE NONE 11
564 C15 C16 SINGLE NONE 12
564 C15 C20 DOUBLE NONE 13
564 C15 C14 SINGLE NONE 14
564 C16 C17 SINGLE NONE 15
564 C16 C23 SINGLE NONE 16
564 C16 C24 SINGLE NONE 17
564 C17 C18 SINGLE NONE 18
564 C18 C19 SINGLE NONE 19
564 C19 C20 SINGLE NONE 20
564 C19 C25 SINGLE NONE 21
564 C19 C26 SINGLE NONE 22
564 C20 C21 SINGLE NONE 23
564 C6 C7 DOUBLE NONE 24
564 C7 C8 SINGLE NONE 25
564 C7 C12 SINGLE NONE 26
564 C8 C9 DOUBLE NONE 27
564 C13 C14 DOUBLE NONE 28
564 C13 C22 SINGLE NONE 29
564 C13 C12 SINGLE NONE 30
564 C21 C22 DOUBLE NONE 31
564 C12 O3 DOUBLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
564 MurckoScaffold S1 scaffold O=C(c1ccc2c(c1)CCCC2)c1ccc2ccccc2c1 InChI=1S/C21H18O/c22-21(19-11-9-15-5-1-3-7-17(15)13-19)20-12-10-16-6-2-4-8-18(16)14-20/h1,3,5,7,9-14H,2,4,6,8H2 YROYNCPTMREZAQ-UHFFFAOYSA-N
564 napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
564 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
564 C2 S1 1
564 C3 S1 1
564 C4 S1 1
564 C5 S1 1
564 C10 S1 1
564 C11 S1 1
564 C15 S1 1
564 C16 S1 1
564 C17 S1 1
564 C18 S1 1
564 C19 S1 1
564 C20 S1 1
564 C6 S1 1
564 C7 S1 1
564 C8 S1 1
564 C9 S1 1
564 C13 S1 1
564 C14 S1 1
564 C21 S1 1
564 C22 S1 1
564 C12 S1 1
564 O3 S1 1
564 C2 F1 1
564 C3 F1 1
564 C4 F1 1
564 C5 F1 1
564 C10 F1 1
564 C11 F1 1
564 C9 F1 1
564 C8 F1 1
564 C7 F1 1
564 C6 F1 1
564 C2 F2 1
564 C3 F2 1
564 C4 F2 1
564 C5 F2 1
564 C10 F2 1
564 C11 F2 1
564 C5 F2 2
564 C10 F2 2
564 C9 F2 2
564 C8 F2 2
564 C7 F2 2
564 C6 F2 2
564 C15 F2 3
564 C20 F2 3
564 C21 F2 3
564 C22 F2 3
564 C13 F2 3
564 C14 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 564
_pdbe_chem_comp_rdkit_properties.exactmw 386.188
_pdbe_chem_comp_rdkit_properties.amw 386.491
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 55
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.308
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 207.547
_pdbe_chem_comp_rdkit_properties.tpsa 54.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.416
_pdbe_chem_comp_rdkit_properties.CrippenMR 112.532
_pdbe_chem_comp_rdkit_properties.chi0v 14.225
_pdbe_chem_comp_rdkit_properties.chi1v 7.862
_pdbe_chem_comp_rdkit_properties.chi2v 4.033
_pdbe_chem_comp_rdkit_properties.chi3v 4.033
_pdbe_chem_comp_rdkit_properties.chi4v 2.610
_pdbe_chem_comp_rdkit_properties.chi0n 40.225
_pdbe_chem_comp_rdkit_properties.chi1n 20.771
_pdbe_chem_comp_rdkit_properties.chi2n 4.033
_pdbe_chem_comp_rdkit_properties.chi3n 4.033
_pdbe_chem_comp_rdkit_properties.chi4n 2.610
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.940
_pdbe_chem_comp_rdkit_properties.kappa1 5.398
_pdbe_chem_comp_rdkit_properties.kappa2 6.550
_pdbe_chem_comp_rdkit_properties.kappa3 3.351
_pdbe_chem_comp_rdkit_properties.Phi 1.219
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
564 UniChem ChEMBL CHEMBL309282
564 UniChem DrugBank DB02741
564 UniChem PDBe 564
564 UniChem SureChEMBL SCHEMBL2391376
564 UniChem 'PubChem TPHARMA' 15054006
564 UniChem BindingDb 31886
564 UniChem 'EPA CompTox Dashboard' DTXSID60274381
564 UniChem 'Probes And Drugs' PD007677
564 UniChem Nikkaji J428.347C
564 UniChem PubChem 2605
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
564 C1 8.604 -0.471 -0.765 ETKDGv3 1
564 C2 7.279 -0.397 -0.112 ETKDGv3 2
564 C3 7.121 -0.735 1.184 ETKDGv3 3
564 C4 5.792 -0.657 1.825 ETKDGv3 4
564 C5 4.729 -0.247 1.118 ETKDGv3 5
564 C10 4.890 0.128 -0.306 ETKDGv3 6
564 C11 6.096 0.058 -0.889 ETKDGv3 7
564 C15 -2.659 0.437 0.387 ETKDGv3 8
564 C16 -3.905 1.259 0.751 ETKDGv3 9
564 C17 -5.040 1.074 -0.286 ETKDGv3 10
564 C18 -5.219 -0.386 -0.676 ETKDGv3 11
564 C19 -3.937 -0.975 -1.314 ETKDGv3 12
564 C20 -2.676 -0.571 -0.535 ETKDGv3 13
564 C23 -3.567 2.770 0.784 ETKDGv3 14
564 C24 -4.394 0.831 2.153 ETKDGv3 15
564 C25 -4.101 -2.514 -1.319 ETKDGv3 16
564 C26 -3.800 -0.487 -2.774 ETKDGv3 17
564 O1 9.618 -0.854 -0.121 ETKDGv3 18
564 O2 8.742 -0.116 -2.105 ETKDGv3 19
564 C6 3.385 -0.159 1.721 ETKDGv3 20
564 C7 2.328 0.240 0.988 ETKDGv3 21
564 C8 2.506 0.636 -0.438 ETKDGv3 22
564 C9 3.698 0.581 -1.046 ETKDGv3 23
564 C13 -0.254 0.054 0.848 ETKDGv3 24
564 C14 -1.394 0.698 1.141 ETKDGv3 25
564 C21 -1.392 -1.256 -0.866 ETKDGv3 26
564 C22 -0.263 -0.966 -0.219 ETKDGv3 27
564 C12 0.986 0.328 1.614 ETKDGv3 28
564 O3 0.897 0.644 2.833 ETKDGv3 29
564 H3 7.961 -1.071 1.780 ETKDGv3 30
564 H4 5.690 -0.936 2.866 ETKDGv3 31
564 H11 6.209 0.336 -1.931 ETKDGv3 32
564 H171 -6.002 1.459 0.120 ETKDGv3 33
564 H172 -4.831 1.668 -1.202 ETKDGv3 34
564 H181 -6.075 -0.468 -1.382 ETKDGv3 35
564 H182 -5.507 -0.967 0.227 ETKDGv3 36
564 H231 -3.072 3.078 -0.163 ETKDGv3 37
564 H232 -4.493 3.374 0.905 ETKDGv3 38
564 H233 -2.900 3.034 1.630 ETKDGv3 39
564 H241 -3.635 1.070 2.928 ETKDGv3 40
564 H242 -5.333 1.361 2.424 ETKDGv3 41
564 H243 -4.580 -0.262 2.197 ETKDGv3 42
564 H251 -5.082 -2.800 -1.758 ETKDGv3 43
564 H252 -4.055 -2.913 -0.282 ETKDGv3 44
564 H253 -3.320 -3.018 -1.924 ETKDGv3 45
564 H261 -3.608 0.606 -2.816 ETKDGv3 46
564 H262 -2.952 -0.993 -3.283 ETKDGv3 47
564 H263 -4.723 -0.707 -3.353 ETKDGv3 48
564 HO2 9.643 -0.161 -2.565 ETKDGv3 49
564 H6 3.255 -0.439 2.761 ETKDGv3 50
564 H8 1.655 0.994 -1.004 ETKDGv3 51
564 H9 3.782 0.880 -2.084 ETKDGv3 52
564 H14 -1.393 1.422 1.944 ETKDGv3 53
564 H21 -1.349 -1.998 -1.651 ETKDGv3 54
564 H22 0.644 -1.499 -0.473 ETKDGv3 55
#