data_5DN
#
_chem_comp.id 5DN
_chem_comp.name "2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H9 Br F N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-10
_chem_comp.pdbx_modified_date 2016-07-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.151
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5DN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5DN3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5DN O01 O1 O 0 1 N N N N N N 35.175 78.393 -11.363 -3.747 -3.368 -0.100 O01 5DN 1
5DN C02 C1 C 0 1 N N N N N N 34.656 79.545 -11.372 -3.993 -2.048 0.010 C02 5DN 2
5DN O03 O2 O 0 1 N N N N N N 34.324 80.138 -12.444 -5.136 -1.650 0.114 O03 5DN 3
5DN C04 C2 C 0 1 Y N N N N N 34.414 80.246 -9.978 -2.873 -1.085 0.006 C04 5DN 4
5DN C05 C3 C 0 1 Y N N N N N 35.413 80.112 -8.989 -1.552 -1.513 0.006 C05 5DN 5
5DN C06 C4 C 0 1 Y N N N N N 35.205 80.681 -7.661 -0.520 -0.563 0.001 C06 5DN 6
5DN C07 C5 C 0 1 Y N N N N N 36.222 80.562 -6.585 0.886 -1.034 0.002 C07 5DN 7
5DN C08 C6 C 0 1 Y N N N N N 37.428 79.831 -6.771 1.167 -2.399 0.002 C08 5DN 8
5DN C09 C7 C 0 1 Y N N N N N 38.370 79.720 -5.715 2.477 -2.832 0.002 C09 5DN 9
5DN C10 C8 C 0 1 Y N N N N N 38.118 80.332 -4.463 3.512 -1.914 0.002 C10 5DN 10
5DN C11 C9 C 0 1 Y N N N N N 36.926 81.043 -4.289 3.240 -0.557 0.003 C11 5DN 11
5DN BR BR1 BR 0 0 N N N N N N 36.579 81.914 -2.564 4.661 0.691 0.004 BR 5DN 12
5DN C13 C10 C 0 1 Y N N N N N 35.985 81.168 -5.319 1.932 -0.112 -0.003 C13 5DN 13
5DN N14 N1 N 0 1 Y N N N N N 34.049 81.338 -7.349 -0.756 0.732 -0.004 N14 5DN 14
5DN C15 C11 C 0 1 Y N N N N N 33.061 81.455 -8.310 -1.992 1.231 -0.005 C15 5DN 15
5DN C16 C12 C 0 1 Y N N N N N 31.864 82.148 -7.961 -2.214 2.624 -0.011 C16 5DN 16
5DN F17 F1 F 0 1 N N N N N N 31.756 82.713 -6.709 -1.168 3.478 -0.016 F17 5DN 17
5DN C18 C13 C 0 1 Y N N N N N 30.802 82.364 -8.826 -3.490 3.103 -0.012 C18 5DN 18
5DN C19 C14 C 0 1 Y N N N N N 30.917 81.831 -10.157 -4.582 2.240 -0.006 C19 5DN 19
5DN C20 C15 C 0 1 Y N N N N N 32.080 81.133 -10.552 -4.405 0.887 -0.000 C20 5DN 20
5DN C21 C16 C 0 1 Y N N N N N 33.181 80.937 -9.624 -3.110 0.359 -0.006 C21 5DN 21
5DN H1 H1 H 0 1 N N N N N N 35.263 78.078 -12.255 -4.512 -3.959 -0.092 H1 5DN 22
5DN H2 H2 H 0 1 N N N N N N 36.330 79.589 -9.215 -1.321 -2.568 0.011 H2 5DN 23
5DN H3 H3 H 0 1 N N N N N N 37.628 79.358 -7.721 0.360 -3.117 0.002 H3 5DN 24
5DN H4 H4 H 0 1 N N N N N N 39.284 79.166 -5.867 2.695 -3.890 0.001 H4 5DN 25
5DN H5 H5 H 0 1 N N N N N N 38.833 80.251 -3.657 4.536 -2.258 0.003 H5 5DN 26
5DN H6 H6 H 0 1 N N N N N N 35.076 81.727 -5.152 1.721 0.947 -0.007 H6 5DN 27
5DN H7 H7 H 0 1 N N N N N N 29.924 82.910 -8.513 -3.657 4.170 -0.016 H7 5DN 28
5DN H8 H8 H 0 1 N N N N N N 30.108 81.965 -10.860 -5.583 2.646 -0.007 H8 5DN 29
5DN H9 H9 H 0 1 N N N N N N 32.152 80.740 -11.556 -5.260 0.228 0.004 H9 5DN 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5DN O03 C02 DOUB N N 1
5DN C02 O01 SING N N 2
5DN C02 C04 SING N N 3
5DN C20 C19 DOUB Y N 4
5DN C20 C21 SING Y N 5
5DN C19 C18 SING Y N 6
5DN C04 C21 DOUB Y N 7
5DN C04 C05 SING Y N 8
5DN C21 C15 SING Y N 9
5DN C05 C06 DOUB Y N 10
5DN C18 C16 DOUB Y N 11
5DN C15 C16 SING Y N 12
5DN C15 N14 DOUB Y N 13
5DN C16 F17 SING N N 14
5DN C06 N14 SING Y N 15
5DN C06 C07 SING N N 16
5DN C08 C07 DOUB Y N 17
5DN C08 C09 SING Y N 18
5DN C07 C13 SING Y N 19
5DN C09 C10 DOUB Y N 20
5DN C13 C11 DOUB Y N 21
5DN C10 C11 SING Y N 22
5DN C11 BR SING N N 23
5DN O01 H1 SING N N 24
5DN C05 H2 SING N N 25
5DN C08 H3 SING N N 26
5DN C09 H4 SING N N 27
5DN C10 H5 SING N N 28
5DN C13 H6 SING N N 29
5DN C18 H7 SING N N 30
5DN C19 H8 SING N N 31
5DN C20 H9 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5DN SMILES ACDLabs 12.01 OC(c1c3c(nc(c1)c2cc(ccc2)Br)c(F)ccc3)=O
5DN InChI InChI 1.03 InChI=1S/C16H9BrFNO2/c17-10-4-1-3-9(7-10)14-8-12(16(20)21)11-5-2-6-13(18)15(11)19-14/h1-8H,(H,20,21)
5DN InChIKey InChI 1.03 AONAJNHHHRKZDU-UHFFFAOYSA-N
5DN SMILES_CANONICAL CACTVS 3.385 OC(=O)c1cc(nc2c(F)cccc12)c3cccc(Br)c3
5DN SMILES CACTVS 3.385 OC(=O)c1cc(nc2c(F)cccc12)c3cccc(Br)c3
5DN SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1cc(cc(c1)Br)c2cc(c3cccc(c3n2)F)C(=O)O
5DN SMILES "OpenEye OEToolkits" 1.9.2 c1cc(cc(c1)Br)c2cc(c3cccc(c3n2)F)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5DN "SYSTEMATIC NAME" ACDLabs 12.01 "2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid"
5DN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-(3-bromophenyl)-8-fluoranyl-quinoline-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5DN 'Create component' 2015-09-10 EBI
5DN 'Initial release' 2016-07-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5DN O01 O 5.700 4.035 1
5DN C02 C 6.999 3.285 2
5DN O03 O 8.298 4.035 3
5DN C04 C 6.999 1.785 4
5DN C05 C 8.298 1.035 5
5DN C06 C 8.298 -0.465 6
5DN C07 C 9.597 -1.215 7
5DN C08 C 10.896 -0.465 8
5DN C09 C 12.195 -1.215 9
5DN C10 C 12.195 -2.715 10
5DN C11 C 10.896 -3.465 11
5DN BR Br 10.896 -4.965 12
5DN C13 C 9.597 -2.715 13
5DN N14 N 6.999 -1.215 14
5DN C15 C 5.700 -0.465 15
5DN C16 C 4.359 -1.267 16
5DN F17 F 4.376 -2.767 17
5DN C18 C 3.000 -0.496 18
5DN C19 C 3.000 1.066 19
5DN C20 C 4.359 1.837 20
5DN C21 C 5.700 1.035 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5DN O03 C02 DOUBLE NONE 1
5DN C02 O01 SINGLE NONE 2
5DN C02 C04 SINGLE NONE 3
5DN C20 C19 DOUBLE NONE 4
5DN C20 C21 SINGLE NONE 5
5DN C19 C18 SINGLE NONE 6
5DN C04 C21 DOUBLE NONE 7
5DN C04 C05 SINGLE NONE 8
5DN C21 C15 SINGLE NONE 9
5DN C05 C06 DOUBLE NONE 10
5DN C18 C16 DOUBLE NONE 11
5DN C15 C16 SINGLE NONE 12
5DN C15 N14 DOUBLE NONE 13
5DN C16 F17 SINGLE NONE 14
5DN C06 N14 SINGLE NONE 15
5DN C06 C07 SINGLE NONE 16
5DN C08 C07 DOUBLE NONE 17
5DN C08 C09 SINGLE NONE 18
5DN C07 C13 SINGLE NONE 19
5DN C09 C10 DOUBLE NONE 20
5DN C13 C11 DOUBLE NONE 21
5DN C10 C11 SINGLE NONE 22
5DN C11 BR SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5DN MurckoScaffold S1 scaffold c1ccc(-c2ccc3ccccc3n2)cc1 InChI=1S/C15H11N/c1-2-6-12(7-3-1)15-11-10-13-8-4-5-9-14(13)16-15/h1-11H FSEXLNMNADBYJU-UHFFFAOYSA-N
5DN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5DN pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
5DN quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5DN C04 S1 1
5DN C05 S1 1
5DN C06 S1 1
5DN C07 S1 1
5DN C08 S1 1
5DN C09 S1 1
5DN C10 S1 1
5DN C11 S1 1
5DN C13 S1 1
5DN N14 S1 1
5DN C15 S1 1
5DN C16 S1 1
5DN C18 S1 1
5DN C19 S1 1
5DN C20 S1 1
5DN C21 S1 1
5DN C07 F1 1
5DN C08 F1 1
5DN C09 F1 1
5DN C10 F1 1
5DN C11 F1 1
5DN C13 F1 1
5DN C15 F1 2
5DN C21 F1 2
5DN C20 F1 2
5DN C19 F1 2
5DN C18 F1 2
5DN C16 F1 2
5DN C06 F2 1
5DN C05 F2 1
5DN C04 F2 1
5DN C21 F2 1
5DN C15 F2 1
5DN N14 F2 1
5DN C19 F3 1
5DN C20 F3 1
5DN C21 F3 1
5DN C15 F3 1
5DN C16 F3 1
5DN C18 F3 1
5DN N14 F3 1
5DN C06 F3 1
5DN C05 F3 1
5DN C04 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5DN
_pdbe_chem_comp_rdkit_properties.exactmw 344.980
_pdbe_chem_comp_rdkit_properties.amw 346.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.475
_pdbe_chem_comp_rdkit_properties.tpsa 50.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.638
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.002
_pdbe_chem_comp_rdkit_properties.chi0v 11.606
_pdbe_chem_comp_rdkit_properties.chi1v 6.276
_pdbe_chem_comp_rdkit_properties.chi2v 2.953
_pdbe_chem_comp_rdkit_properties.chi3v 2.953
_pdbe_chem_comp_rdkit_properties.chi4v 1.991
_pdbe_chem_comp_rdkit_properties.chi0n 19.020
_pdbe_chem_comp_rdkit_properties.chi1n 9.892
_pdbe_chem_comp_rdkit_properties.chi2n 2.557
_pdbe_chem_comp_rdkit_properties.chi3n 2.557
_pdbe_chem_comp_rdkit_properties.chi4n 1.694
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.270
_pdbe_chem_comp_rdkit_properties.kappa1 6.661
_pdbe_chem_comp_rdkit_properties.kappa2 5.255
_pdbe_chem_comp_rdkit_properties.kappa3 2.519
_pdbe_chem_comp_rdkit_properties.Phi 1.667
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5DN UniChem PDBe 5DN
5DN UniChem SureChEMBL SCHEMBL24686630
5DN UniChem PubChem 80043125
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5DN O01 -3.528 -1.678 1.966 ETKDGv3 1
5DN C02 -2.406 -2.022 1.216 ETKDGv3 2
5DN O03 -2.048 -3.229 1.158 ETKDGv3 3
5DN C04 -1.593 -0.981 0.550 ETKDGv3 4
5DN C05 -0.116 -1.142 0.562 ETKDGv3 5
5DN C06 0.678 -0.202 0.016 ETKDGv3 6
5DN C07 2.159 -0.315 0.024 ETKDGv3 7
5DN C08 2.787 -1.508 -0.027 ETKDGv3 8
5DN C09 4.263 -1.578 -0.037 ETKDGv3 9
5DN C10 4.990 -0.456 -0.008 ETKDGv3 10
5DN C11 4.317 0.858 0.034 ETKDGv3 11
5DN BR 5.362 2.456 0.071 ETKDGv3 12
5DN C13 2.979 0.926 0.046 ETKDGv3 13
5DN N14 0.078 0.971 -0.560 ETKDGv3 14
5DN C15 -1.210 1.142 -0.602 ETKDGv3 15
5DN C16 -1.779 2.359 -1.206 ETKDGv3 16
5DN F17 -0.959 3.328 -1.685 ETKDGv3 17
5DN C18 -3.105 2.511 -1.286 ETKDGv3 18
5DN C19 -4.031 1.468 -0.793 ETKDGv3 19
5DN C20 -3.583 0.344 -0.218 ETKDGv3 20
5DN C21 -2.125 0.115 -0.043 ETKDGv3 21
5DN H1 -4.074 -2.387 2.441 ETKDGv3 22
5DN H2 0.310 -2.008 1.053 ETKDGv3 23
5DN H3 2.232 -2.435 -0.091 ETKDGv3 24
5DN H4 4.755 -2.542 -0.073 ETKDGv3 25
5DN H5 6.071 -0.511 -0.017 ETKDGv3 26
5DN H6 2.496 1.894 0.083 ETKDGv3 27
5DN H7 -3.515 3.407 -1.734 ETKDGv3 28
5DN H8 -5.097 1.614 -0.917 ETKDGv3 29
5DN H9 -4.310 -0.399 0.077 ETKDGv3 30
#