data_5E2
#
_chem_comp.id 5E2
_chem_comp.name "2-(3-bromophenyl)-6-chloroquinoline-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H9 Br Cl N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-15
_chem_comp.pdbx_modified_date 2016-07-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 362.605
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5E2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5DR9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5E2 C1 C1 C 0 1 Y N N N N N -5.670 -8.826 12.771 -2.172 -1.473 0.007 C1 5E2 1
5E2 C6 C2 C 0 1 Y N N N N N -5.428 -13.217 16.303 3.355 -2.531 0.012 C6 5E2 2
5E2 C7 C3 C 0 1 Y N N N N N -6.035 -14.427 15.979 4.266 -1.490 0.005 C7 5E2 3
5E2 C9 C4 C 0 1 Y N N N N N -6.782 -13.465 13.870 2.472 0.098 0.001 C9 5E2 4
5E2 C5 C5 C 0 1 Y N N N N N -5.494 -12.142 15.426 2.001 -2.267 0.008 C5 5E2 5
5E2 C4 C6 C 0 1 Y N N N N N -6.168 -12.256 14.207 1.550 -0.948 0.002 C4 5E2 6
5E2 C3 C7 C 0 1 Y N N N N N -6.229 -11.109 13.288 0.096 -0.658 0.004 C3 5E2 7
5E2 C12 C8 C 0 1 Y N N N N N -7.758 -9.389 9.146 -3.310 2.603 -0.008 C12 5E2 8
5E2 C2 C9 C 0 1 Y N N N N N -5.597 -9.873 13.643 -0.808 -1.731 0.005 C2 5E2 9
5E2 CL CL1 CL 0 0 N N N N N N -7.306 -6.900 8.276 -5.965 2.056 -0.012 CL 5E2 10
5E2 C13 C10 C 0 1 Y N N N N N -7.153 -8.148 9.443 -4.287 1.609 -0.006 C13 5E2 11
5E2 C11 C11 C 0 1 Y N N N N N -7.660 -10.410 10.046 -1.986 2.287 -0.004 C11 5E2 12
5E2 C14 C12 C 0 1 Y N N N N N -6.467 -7.906 10.595 -3.941 0.289 -0.002 C14 5E2 13
5E2 C15 C13 C 0 1 Y N N N N N -6.357 -8.956 11.539 -2.590 -0.071 0.002 C15 5E2 14
5E2 C C14 C 0 1 N N N N N N -5.022 -7.541 13.122 -3.162 -2.571 0.009 C 5E2 15
5E2 O1 O1 O 0 1 N N N N N N -5.132 -7.096 14.396 -2.751 -3.848 -0.108 O1 5E2 16
5E2 O O2 O 0 1 N N N N N N -4.389 -6.835 12.364 -4.346 -2.320 0.115 O 5E2 17
5E2 C10 C15 C 0 1 Y N N N N N -6.951 -10.207 11.270 -1.591 0.936 0.001 C10 5E2 18
5E2 N N1 N 0 1 Y N N N N N -6.886 -11.277 12.141 -0.302 0.596 0.005 N 5E2 19
5E2 C8 C16 C 0 1 Y N N N N N -6.695 -14.512 14.768 3.825 -0.178 -0.000 C8 5E2 20
5E2 BR BR1 BR 0 0 N N N N N N -7.545 -16.191 14.304 5.077 1.239 -0.002 BR 5E2 21
5E2 H1 H1 H 0 1 N N N N N N -4.903 -13.114 17.241 3.705 -3.553 0.016 H1 5E2 22
5E2 H2 H2 H 0 1 N N N N N N -5.992 -15.271 16.651 5.325 -1.701 0.004 H2 5E2 23
5E2 H3 H3 H 0 1 N N N N N N -7.310 -13.578 12.934 2.128 1.122 -0.003 H3 5E2 24
5E2 H4 H4 H 0 1 N N N N N N -5.019 -11.208 15.689 1.291 -3.081 0.008 H4 5E2 25
5E2 H5 H5 H 0 1 N N N N N N -8.292 -9.528 8.218 -3.608 3.641 -0.012 H5 5E2 26
5E2 H6 H6 H 0 1 N N N N N N -5.073 -9.772 14.582 -0.446 -2.749 0.005 H6 5E2 27
5E2 H7 H7 H 0 1 N N N N N N -8.116 -11.366 9.834 -1.242 3.069 -0.005 H7 5E2 28
5E2 H8 H8 H 0 1 N N N N N N -6.020 -6.941 10.783 -4.706 -0.473 0.000 H8 5E2 29
5E2 H9 H9 H 0 1 N N N N N N -4.674 -6.269 14.484 -3.435 -4.532 -0.102 H9 5E2 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5E2 CL C13 SING N N 1
5E2 C12 C13 DOUB Y N 2
5E2 C12 C11 SING Y N 3
5E2 C13 C14 SING Y N 4
5E2 C11 C10 DOUB Y N 5
5E2 C14 C15 DOUB Y N 6
5E2 C10 C15 SING Y N 7
5E2 C10 N SING Y N 8
5E2 C15 C1 SING Y N 9
5E2 N C3 DOUB Y N 10
5E2 O C DOUB N N 11
5E2 C1 C SING N N 12
5E2 C1 C2 DOUB Y N 13
5E2 C O1 SING N N 14
5E2 C3 C2 SING Y N 15
5E2 C3 C4 SING N N 16
5E2 C9 C4 DOUB Y N 17
5E2 C9 C8 SING Y N 18
5E2 C4 C5 SING Y N 19
5E2 BR C8 SING N N 20
5E2 C8 C7 DOUB Y N 21
5E2 C5 C6 DOUB Y N 22
5E2 C7 C6 SING Y N 23
5E2 C6 H1 SING N N 24
5E2 C7 H2 SING N N 25
5E2 C9 H3 SING N N 26
5E2 C5 H4 SING N N 27
5E2 C12 H5 SING N N 28
5E2 C2 H6 SING N N 29
5E2 C11 H7 SING N N 30
5E2 C14 H8 SING N N 31
5E2 O1 H9 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5E2 SMILES ACDLabs 12.01 c2(C(O)=O)cc(c1cc(ccc1)Br)nc3ccc(Cl)cc23
5E2 InChI InChI 1.03 InChI=1S/C16H9BrClNO2/c17-10-3-1-2-9(6-10)15-8-13(16(20)21)12-7-11(18)4-5-14(12)19-15/h1-8H,(H,20,21)
5E2 InChIKey InChI 1.03 UEYRXZBCYPCXSJ-UHFFFAOYSA-N
5E2 SMILES_CANONICAL CACTVS 3.385 OC(=O)c1cc(nc2ccc(Cl)cc12)c3cccc(Br)c3
5E2 SMILES CACTVS 3.385 OC(=O)c1cc(nc2ccc(Cl)cc12)c3cccc(Br)c3
5E2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1cc(cc(c1)Br)c2cc(c3cc(ccc3n2)Cl)C(=O)O
5E2 SMILES "OpenEye OEToolkits" 1.9.2 c1cc(cc(c1)Br)c2cc(c3cc(ccc3n2)Cl)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5E2 "SYSTEMATIC NAME" ACDLabs 12.01 "2-(3-bromophenyl)-6-chloroquinoline-4-carboxylic acid"
5E2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-(3-bromophenyl)-6-chloranyl-quinoline-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5E2 'Create component' 2015-09-15 EBI
5E2 'Initial release' 2016-07-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5E2 C1 C 8.295 1.785 1
5E2 C6 C 13.491 -1.215 2
5E2 C7 C 13.491 -2.715 3
5E2 C9 C 10.893 -2.715 4
5E2 C5 C 12.192 -0.465 5
5E2 C4 C 10.893 -1.215 6
5E2 C3 C 9.594 -0.465 7
5E2 C12 C 4.296 -0.496 8
5E2 C2 C 9.594 1.035 9
5E2 CL Cl 3.000 1.821 10
5E2 C13 C 4.296 1.066 11
5E2 C11 C 5.655 -1.267 12
5E2 C14 C 5.655 1.837 13
5E2 C15 C 6.996 1.035 14
5E2 C C 8.295 3.285 15
5E2 O1 O 6.996 4.035 16
5E2 O O 9.594 4.035 17
5E2 C10 C 6.996 -0.465 18
5E2 N N 8.295 -1.215 19
5E2 C8 C 12.192 -3.465 20
5E2 BR Br 12.192 -4.965 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5E2 CL C13 SINGLE NONE 1
5E2 C12 C13 SINGLE NONE 2
5E2 C12 C11 DOUBLE NONE 3
5E2 C13 C14 DOUBLE NONE 4
5E2 C11 C10 SINGLE NONE 5
5E2 C14 C15 SINGLE NONE 6
5E2 C10 C15 SINGLE NONE 7
5E2 C10 N DOUBLE NONE 8
5E2 C15 C1 DOUBLE NONE 9
5E2 N C3 SINGLE NONE 10
5E2 O C DOUBLE NONE 11
5E2 C1 C SINGLE NONE 12
5E2 C1 C2 SINGLE NONE 13
5E2 C O1 SINGLE NONE 14
5E2 C3 C2 DOUBLE NONE 15
5E2 C3 C4 SINGLE NONE 16
5E2 C9 C4 DOUBLE NONE 17
5E2 C9 C8 SINGLE NONE 18
5E2 C4 C5 SINGLE NONE 19
5E2 BR C8 SINGLE NONE 20
5E2 C8 C7 DOUBLE NONE 21
5E2 C5 C6 DOUBLE NONE 22
5E2 C7 C6 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5E2 MurckoScaffold S1 scaffold c1ccc(-c2ccc3ccccc3n2)cc1 InChI=1S/C15H11N/c1-2-6-12(7-3-1)15-11-10-13-8-4-5-9-14(13)16-15/h1-11H FSEXLNMNADBYJU-UHFFFAOYSA-N
5E2 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5E2 pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
5E2 quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5E2 C1 S1 1
5E2 C6 S1 1
5E2 C7 S1 1
5E2 C9 S1 1
5E2 C5 S1 1
5E2 C4 S1 1
5E2 C3 S1 1
5E2 C12 S1 1
5E2 C2 S1 1
5E2 C13 S1 1
5E2 C11 S1 1
5E2 C14 S1 1
5E2 C15 S1 1
5E2 C10 S1 1
5E2 N S1 1
5E2 C8 S1 1
5E2 C6 F1 1
5E2 C5 F1 1
5E2 C4 F1 1
5E2 C9 F1 1
5E2 C8 F1 1
5E2 C7 F1 1
5E2 C12 F1 2
5E2 C13 F1 2
5E2 C14 F1 2
5E2 C15 F1 2
5E2 C10 F1 2
5E2 C11 F1 2
5E2 C3 F2 1
5E2 C2 F2 1
5E2 C1 F2 1
5E2 C15 F2 1
5E2 C10 F2 1
5E2 N F2 1
5E2 C13 F3 1
5E2 C14 F3 1
5E2 C15 F3 1
5E2 C10 F3 1
5E2 C11 F3 1
5E2 C12 F3 1
5E2 N F3 1
5E2 C3 F3 1
5E2 C2 F3 1
5E2 C1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5E2
_pdbe_chem_comp_rdkit_properties.exactmw 360.951
_pdbe_chem_comp_rdkit_properties.amw 362.610
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 146.613
_pdbe_chem_comp_rdkit_properties.tpsa 50.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.153
_pdbe_chem_comp_rdkit_properties.CrippenMR 83.054
_pdbe_chem_comp_rdkit_properties.chi0v 12.362
_pdbe_chem_comp_rdkit_properties.chi1v 6.654
_pdbe_chem_comp_rdkit_properties.chi2v 3.100
_pdbe_chem_comp_rdkit_properties.chi3v 3.100
_pdbe_chem_comp_rdkit_properties.chi4v 2.112
_pdbe_chem_comp_rdkit_properties.chi0n 19.020
_pdbe_chem_comp_rdkit_properties.chi1n 9.892
_pdbe_chem_comp_rdkit_properties.chi2n 2.515
_pdbe_chem_comp_rdkit_properties.chi3n 2.515
_pdbe_chem_comp_rdkit_properties.chi4n 1.673
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.910
_pdbe_chem_comp_rdkit_properties.kappa1 6.900
_pdbe_chem_comp_rdkit_properties.kappa2 5.466
_pdbe_chem_comp_rdkit_properties.kappa3 2.774
_pdbe_chem_comp_rdkit_properties.Phi 1.796
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5E2 UniChem PDBe 5E2
5E2 UniChem ZINC ZINC000006330695
5E2 UniChem eMolecules 3784519
5E2 UniChem PubChem 25218890
5E2 UniChem SureChEMBL SCHEMBL24685853
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5E2 C1 1.583 -1.057 0.190 ETKDGv3 1
5E2 C6 -4.232 -1.334 0.028 ETKDGv3 2
5E2 C7 -4.955 -0.085 0.334 ETKDGv3 3
5E2 C9 -2.804 1.069 0.376 ETKDGv3 4
5E2 C5 -2.897 -1.330 -0.078 ETKDGv3 5
5E2 C4 -2.128 -0.068 0.116 ETKDGv3 6
5E2 C3 -0.648 -0.043 -0.002 ETKDGv3 7
5E2 C12 3.232 2.585 -1.183 ETKDGv3 8
5E2 C2 0.104 -1.115 0.306 ETKDGv3 9
5E2 CL 5.829 1.568 -1.263 ETKDGv3 10
5E2 C13 4.109 1.414 -0.951 ETKDGv3 11
5E2 C11 1.909 2.509 -1.009 ETKDGv3 12
5E2 C14 3.614 0.241 -0.528 ETKDGv3 13
5E2 C15 2.159 0.085 -0.263 ETKDGv3 14
5E2 C 2.348 -2.257 0.598 ETKDGv3 15
5E2 O1 1.808 -3.522 0.383 ETKDGv3 16
5E2 O 3.452 -2.150 1.195 ETKDGv3 17
5E2 C10 1.292 1.251 -0.563 ETKDGv3 18
5E2 N 0.001 1.167 -0.433 ETKDGv3 19
5E2 C8 -4.278 1.058 0.495 ETKDGv3 20
5E2 BR -5.210 2.680 0.883 ETKDGv3 21
5E2 H1 -4.786 -2.252 -0.121 ETKDGv3 22
5E2 H2 -6.034 -0.100 0.419 ETKDGv3 23
5E2 H3 -2.280 2.005 0.521 ETKDGv3 24
5E2 H4 -2.392 -2.252 -0.333 ETKDGv3 25
5E2 H5 3.671 3.517 -1.514 ETKDGv3 26
5E2 H6 -0.355 -2.020 0.682 ETKDGv3 27
5E2 H7 1.290 3.378 -1.201 ETKDGv3 28
5E2 H8 4.294 -0.591 -0.420 ETKDGv3 29
5E2 H9 2.303 -4.355 0.676 ETKDGv3 30
#