data_5EZ
#
_chem_comp.id 5EZ
_chem_comp.name 7-choro-6-[(3R)-pyrrolidin-3-ylmethoxy]isoquinolin-1(2H)-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H15 Cl N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-02-04
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 278.734
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5EZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3ZLX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5EZ N1 N1 N 0 1 N N N N N N -14.169 23.080 -4.485 5.494 0.191 -1.049 N1 5EZ 1
5EZ C2 C2 C 0 1 N N N N N N -15.414 23.913 -4.507 4.134 -0.317 -0.790 C2 5EZ 2
5EZ C3 C3 C 0 1 N N N N N N -13.053 24.064 -4.372 5.860 1.127 0.035 C3 5EZ 3
5EZ C4 C4 C 0 1 N N R N N N -15.125 25.065 -3.501 3.631 0.360 0.502 C4 5EZ 4
5EZ C5 C5 C 0 1 N N N N N N -13.642 25.356 -3.729 4.508 1.637 0.592 C5 5EZ 5
5EZ C6 C6 C 0 1 N N N N N N -15.981 26.286 -3.771 2.151 0.727 0.380 C6 5EZ 6
5EZ O7 O7 O 0 1 N N N N N N -17.207 25.985 -3.095 1.369 -0.466 0.301 O7 5EZ 7
5EZ C8 C8 C 0 1 Y N N N N N -20.802 26.937 -2.890 -2.149 -1.319 -0.008 C8 5EZ 8
5EZ C9 C9 C 0 1 Y N N N N N -19.543 26.145 -2.710 -0.794 -1.444 0.106 C9 5EZ 9
5EZ C11 C11 C 0 1 Y N N N N N -18.375 26.732 -3.467 0.024 -0.316 0.188 C11 5EZ 10
5EZ C13 C13 C 0 1 Y N N N N N -18.227 28.183 -3.114 -0.523 0.954 0.155 C13 5EZ 11
5EZ C14 C14 C 0 1 Y N N N N N -20.699 28.264 -2.935 -2.726 -0.048 -0.044 C14 5EZ 12
5EZ C15 C15 C 0 1 Y N N N N N -19.365 28.950 -2.970 -1.904 1.101 0.039 C15 5EZ 13
5EZ C16 C16 C 0 1 N N N N N N -19.328 30.368 -2.736 -2.543 2.418 -0.000 C16 5EZ 14
5EZ C17 C17 C 0 1 N N N N N N -20.472 31.081 -2.640 -3.878 2.500 -0.113 C17 5EZ 15
5EZ N18 N18 N 0 1 N N N N N N -21.766 30.526 -2.767 -4.675 1.393 -0.193 N18 5EZ 16
5EZ C19 C19 C 0 1 N N N N N N -21.941 29.128 -3.066 -4.174 0.142 -0.165 C19 5EZ 17
5EZ O21 O21 O 0 1 N N N N N N -22.978 28.522 -2.424 -4.917 -0.820 -0.240 O21 5EZ 18
5EZ CL2 CL2 CL 0 0 N N N N N N -19.805 24.416 -3.295 -0.079 -3.026 0.151 CL2 5EZ 19
5EZ H1 H1 H 0 1 N N N N N N -14.173 22.461 -3.700 6.157 -0.567 -1.111 H1 5EZ 20
5EZ H21C H21C H 0 0 N N N N N N -15.597 24.313 -5.515 3.478 -0.060 -1.622 H21C 5EZ 21
5EZ H22C H22C H 0 0 N N N N N N -16.284 23.322 -4.183 4.161 -1.398 -0.656 H22C 5EZ 22
5EZ H31C H31C H 0 0 N N N N N N -12.254 23.656 -3.735 6.420 0.608 0.813 H31C 5EZ 23
5EZ H32C H32C H 0 0 N N N N N N -12.648 24.290 -5.369 6.444 1.958 -0.363 H32C 5EZ 24
5EZ H4 H4 H 0 1 N N N N N N -15.285 24.708 -2.473 3.800 -0.285 1.365 H4 5EZ 25
5EZ H51C H51C H 0 0 N N N N N N -13.142 25.571 -2.773 4.611 1.968 1.625 H51C 5EZ 26
5EZ H52C H52C H 0 0 N N N N N N -13.519 26.213 -4.408 4.103 2.433 -0.033 H52C 5EZ 27
5EZ H61C H61C H 0 0 N N N N N N -15.515 27.193 -3.358 1.847 1.304 1.253 H61C 5EZ 28
5EZ H62C H62C H 0 0 N N N N N N -16.148 26.419 -4.850 1.997 1.323 -0.520 H62C 5EZ 29
5EZ H8 H8 H 0 1 N N N N N N -21.761 26.448 -2.980 -2.771 -2.199 -0.075 H8 5EZ 30
5EZ H131 H131 H 0 0 N N N N N N -17.249 28.619 -2.975 0.114 1.824 0.219 H131 5EZ 31
5EZ H16 H16 H 0 1 N N N N N N -18.376 30.869 -2.636 -1.945 3.315 0.061 H16 5EZ 32
5EZ H17 H17 H 0 1 N N N N N N -20.393 32.142 -2.455 -4.339 3.476 -0.140 H17 5EZ 33
5EZ H18 H18 H 0 1 N N N N N N -22.569 31.110 -2.648 -5.634 1.511 -0.273 H18 5EZ 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5EZ N1 C2 SING N N 1
5EZ N1 C3 SING N N 2
5EZ C2 C4 SING N N 3
5EZ C3 C5 SING N N 4
5EZ C4 C5 SING N N 5
5EZ C4 C6 SING N N 6
5EZ C6 O7 SING N N 7
5EZ O7 C11 SING N N 8
5EZ C8 C9 DOUB Y N 9
5EZ C8 C14 SING Y N 10
5EZ C9 C11 SING Y N 11
5EZ C9 CL2 SING N N 12
5EZ C11 C13 DOUB Y N 13
5EZ C13 C15 SING Y N 14
5EZ C14 C15 DOUB Y N 15
5EZ C14 C19 SING N N 16
5EZ C15 C16 SING N N 17
5EZ C16 C17 DOUB N N 18
5EZ C17 N18 SING N N 19
5EZ N18 C19 SING N N 20
5EZ C19 O21 DOUB N N 21
5EZ N1 H1 SING N N 22
5EZ C2 H21C SING N N 23
5EZ C2 H22C SING N N 24
5EZ C3 H31C SING N N 25
5EZ C3 H32C SING N N 26
5EZ C4 H4 SING N N 27
5EZ C5 H51C SING N N 28
5EZ C5 H52C SING N N 29
5EZ C6 H61C SING N N 30
5EZ C6 H62C SING N N 31
5EZ C8 H8 SING N N 32
5EZ C13 H131 SING N N 33
5EZ C16 H16 SING N N 34
5EZ C17 H17 SING N N 35
5EZ N18 H18 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5EZ SMILES ACDLabs 12.01 O=C3NC=Cc2cc(OCC1CCNC1)c(Cl)cc23
5EZ InChI InChI 1.03 InChI=1S/C14H15ClN2O2/c15-12-6-11-10(2-4-17-14(11)18)5-13(12)19-8-9-1-3-16-7-9/h2,4-6,9,16H,1,3,7-8H2,(H,17,18)/t9-/m1/s1
5EZ InChIKey InChI 1.03 RCMBOTAAIQVYEO-SECBINFHSA-N
5EZ SMILES_CANONICAL CACTVS 3.385 Clc1cc2C(=O)NC=Cc2cc1OC[C@@H]3CCNC3
5EZ SMILES CACTVS 3.385 Clc1cc2C(=O)NC=Cc2cc1OC[CH]3CCNC3
5EZ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1c2c(cc(c1OC[C@@H]3CCNC3)Cl)C(=O)NC=C2
5EZ SMILES "OpenEye OEToolkits" 1.9.2 c1c2c(cc(c1OCC3CCNC3)Cl)C(=O)NC=C2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5EZ "SYSTEMATIC NAME" ACDLabs 12.01 7-chloro-6-[(3R)-pyrrolidin-3-ylmethoxy]isoquinolin-1(2H)-one
5EZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 7-chloranyl-6-[[(3R)-pyrrolidin-3-yl]methoxy]-2H-isoquinolin-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5EZ 'Create component' 2013-02-04 EBI
5EZ 'Initial release' 2013-05-22 RCSB
5EZ 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5EZ N1 N 4.675 4.303 1
5EZ C2 C 6.142 3.991 2
5EZ C3 C 3.925 3.004 3
5EZ C4 C 6.299 2.499 4
5EZ C5 C 4.928 1.889 5
5EZ C6 C 7.598 1.749 6
5EZ O7 O 7.598 0.249 7
5EZ C8 C 10.196 -2.751 8
5EZ C9 C 8.897 -2.001 9
5EZ C11 C 8.897 -0.501 10
5EZ C13 C 10.196 0.249 11
5EZ C14 C 11.495 -2.001 12
5EZ C15 C 11.495 -0.501 13
5EZ C16 C 12.836 0.301 14
5EZ C17 C 14.195 -0.470 15
5EZ N18 N 14.195 -2.032 16
5EZ C19 C 12.836 -2.803 17
5EZ O21 O 12.819 -4.303 18
5EZ CL2 Cl 7.598 -2.751 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5EZ N1 C2 SINGLE NONE 1
5EZ N1 C3 SINGLE NONE 2
5EZ C2 C4 SINGLE NONE 3
5EZ C3 C5 SINGLE NONE 4
5EZ C4 C5 SINGLE NONE 5
5EZ C4 C6 SINGLE BEGINDASH 6
5EZ C6 O7 SINGLE NONE 7
5EZ O7 C11 SINGLE NONE 8
5EZ C8 C9 DOUBLE NONE 9
5EZ C8 C14 SINGLE NONE 10
5EZ C9 C11 SINGLE NONE 11
5EZ C9 CL2 SINGLE NONE 12
5EZ C11 C13 DOUBLE NONE 13
5EZ C13 C15 SINGLE NONE 14
5EZ C14 C15 DOUBLE NONE 15
5EZ C14 C19 SINGLE NONE 16
5EZ C15 C16 SINGLE NONE 17
5EZ C16 C17 DOUBLE NONE 18
5EZ C17 N18 SINGLE NONE 19
5EZ N18 C19 SINGLE NONE 20
5EZ C19 O21 DOUBLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5EZ MurckoScaffold S1 scaffold 'O=c1[nH]ccc2cc(OC[C@@H]3CCNC3)ccc12' InChI=1S/C14H16N2O2/c17-14-13-2-1-12(7-11(13)4-6-16-14)18-9-10-3-5-15-8-10/h1-2,4,6-7,10,15H,3,5,8-9H2,(H,16,17)/t10-/m1/s1 JHPZEYIKRARRHT-SNVBAGLBSA-N
5EZ isoquinoline F1 fragment c1ccc2cnccc2c1 InChI=1S/C9H7N/c1-2-4-9-7-10-6-5-8(9)3-1/h1-7H AWJUIBRHMBBTKR-UHFFFAOYSA-N
5EZ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5EZ pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5EZ N1 S1 1
5EZ C2 S1 1
5EZ C3 S1 1
5EZ C4 S1 1
5EZ C5 S1 1
5EZ C6 S1 1
5EZ O7 S1 1
5EZ C8 S1 1
5EZ C9 S1 1
5EZ C11 S1 1
5EZ C13 S1 1
5EZ C14 S1 1
5EZ C15 S1 1
5EZ C16 S1 1
5EZ C17 S1 1
5EZ N18 S1 1
5EZ C19 S1 1
5EZ O21 S1 1
5EZ C11 F1 1
5EZ C13 F1 1
5EZ C15 F1 1
5EZ C14 F1 1
5EZ C8 F1 1
5EZ C9 F1 1
5EZ C19 F1 1
5EZ N18 F1 1
5EZ C17 F1 1
5EZ C16 F1 1
5EZ C8 F2 1
5EZ C9 F2 1
5EZ C11 F2 1
5EZ C13 F2 1
5EZ C15 F2 1
5EZ C14 F2 1
5EZ C17 F3 1
5EZ C16 F3 1
5EZ C15 F3 1
5EZ C14 F3 1
5EZ C19 F3 1
5EZ N18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5EZ
_pdbe_chem_comp_rdkit_properties.exactmw 278.082
_pdbe_chem_comp_rdkit_properties.amw 278.739
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 136.470
_pdbe_chem_comp_rdkit_properties.tpsa 54.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.179
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.342
_pdbe_chem_comp_rdkit_properties.chi0v 9.845
_pdbe_chem_comp_rdkit_properties.chi1v 5.324
_pdbe_chem_comp_rdkit_properties.chi2v 2.401
_pdbe_chem_comp_rdkit_properties.chi3v 2.401
_pdbe_chem_comp_rdkit_properties.chi4v 1.501
_pdbe_chem_comp_rdkit_properties.chi0n 24.089
_pdbe_chem_comp_rdkit_properties.chi1n 12.340
_pdbe_chem_comp_rdkit_properties.chi2n 2.135
_pdbe_chem_comp_rdkit_properties.chi3n 2.135
_pdbe_chem_comp_rdkit_properties.chi4n 1.321
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 3.993
_pdbe_chem_comp_rdkit_properties.kappa2 5.230
_pdbe_chem_comp_rdkit_properties.kappa3 2.596
_pdbe_chem_comp_rdkit_properties.Phi 1.099
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5EZ UniChem ChEMBL CHEMBL2391618
5EZ UniChem PDBe 5EZ
5EZ UniChem ZINC ZINC000095920662
5EZ UniChem PubChem 73348939
5EZ UniChem BindingDb 50491987
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5EZ N1 4.304 -0.039 -1.108 ETKDGv3 1
5EZ C2 3.501 -1.112 -0.517 ETKDGv3 2
5EZ C3 4.534 0.963 -0.064 ETKDGv3 3
5EZ C4 2.928 -0.600 0.802 ETKDGv3 4
5EZ C5 3.936 0.447 1.234 ETKDGv3 5
5EZ C6 1.526 0.007 0.622 ETKDGv3 6
5EZ O7 0.602 -1.017 0.256 ETKDGv3 7
5EZ C8 -2.894 -1.843 -0.637 ETKDGv3 8
5EZ C9 -1.586 -1.986 -0.388 ETKDGv3 9
5EZ C11 -0.765 -0.816 0.004 ETKDGv3 10
5EZ C13 -1.348 0.396 0.107 ETKDGv3 11
5EZ C14 -3.535 -0.512 -0.525 ETKDGv3 12
5EZ C15 -2.795 0.560 -0.169 ETKDGv3 13
5EZ C16 -3.414 1.903 -0.049 ETKDGv3 14
5EZ C17 -4.717 2.083 -0.291 ETKDGv3 15
5EZ N18 -5.544 0.976 -0.672 ETKDGv3 16
5EZ C19 -4.976 -0.332 -0.796 ETKDGv3 17
5EZ O21 -5.701 -1.307 -1.131 ETKDGv3 18
5EZ CL2 -0.843 -3.571 -0.528 ETKDGv3 19
5EZ H1 5.226 -0.434 -1.409 ETKDGv3 20
5EZ H21C 2.708 -1.423 -1.230 ETKDGv3 21
5EZ H22C 4.142 -2.001 -0.313 ETKDGv3 22
5EZ H31C 5.619 1.175 0.061 ETKDGv3 23
5EZ H32C 4.025 1.906 -0.359 ETKDGv3 24
5EZ H4 2.875 -1.420 1.553 ETKDGv3 25
5EZ H51C 4.735 -0.038 1.838 ETKDGv3 26
5EZ H52C 3.485 1.267 1.834 ETKDGv3 27
5EZ H61C 1.199 0.462 1.582 ETKDGv3 28
5EZ H62C 1.547 0.792 -0.166 ETKDGv3 29
5EZ H8 -3.484 -2.705 -0.923 ETKDGv3 30
5EZ H131 -0.774 1.267 0.391 ETKDGv3 31
5EZ H16 -2.806 2.752 0.237 ETKDGv3 32
5EZ H17 -5.151 3.070 -0.199 ETKDGv3 33
5EZ H18 -6.560 1.128 -0.859 ETKDGv3 34
#