data_5HU
#
_chem_comp.id 5HU
_chem_comp.name "5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE"
_chem_comp.type "DNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C10 H15 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id DU
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 338.208
_chem_comp.one_letter_code U
_chem_comp.three_letter_code 5HU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MRS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5HU P P P 0 1 N N N N N N 26.429 15.281 8.373 -4.427 1.005 -0.232 P 5HU 1
5HU OP1 O1P O 0 1 N N N N N N 27.421 14.840 9.555 -3.996 1.758 0.967 OP1 5HU 2
5HU OP2 O2P O 0 1 N N N N N N 25.545 16.639 8.835 -5.062 2.024 -1.306 OP2 5HU 3
5HU OP3 O3P O 0 1 N Y N N N N 27.272 15.644 6.985 -5.530 -0.089 0.188 OP3 5HU 4
5HU "O5'" O5* O 0 1 N N N N N N 25.351 14.179 8.129 -3.156 0.262 -0.884 "O5'" 5HU 5
5HU "C5'" C5* C 0 1 N N N N N N 25.344 13.054 7.345 -2.568 -0.533 0.147 "C5'" 5HU 6
5HU "C4'" C4* C 0 1 N N R N N N 23.937 12.428 7.521 -1.348 -1.270 -0.409 "C4'" 5HU 7
5HU "O4'" O4* O 0 1 N N N N N N 23.831 11.013 7.711 -0.264 -0.348 -0.662 "O4'" 5HU 8
5HU "C3'" C3* C 0 1 N N S N N N 22.949 12.897 8.652 -0.764 -2.237 0.651 "C3'" 5HU 9
5HU "O3'" O3* O 0 1 N N N N N N 21.484 13.119 8.436 -1.428 -3.502 0.610 "O3'" 5HU 10
5HU "C2'" C2* C 0 1 N N N N N N 23.502 11.932 9.749 0.708 -2.371 0.193 "C2'" 5HU 11
5HU "C1'" C1* C 0 1 N N R N N N 23.551 10.629 9.042 0.947 -1.123 -0.679 "C1'" 5HU 12
5HU N1 N1 N 0 1 N N N N N N 24.582 9.632 9.383 2.051 -0.334 -0.128 N1 5HU 13
5HU C2 C2 C 0 1 N N N N N N 24.098 8.369 9.646 1.923 0.237 1.083 C2 5HU 14
5HU O2 O2 O 0 1 N N N N N N 22.830 8.136 9.576 0.890 0.090 1.708 O2 5HU 15
5HU N3 N3 N 0 1 N N N N N N 24.918 7.363 9.978 2.922 0.966 1.614 N3 5HU 16
5HU C4 C4 C 0 1 N N N N N N 26.248 7.575 10.059 4.075 1.134 0.936 C4 5HU 17
5HU O4 O4 O 0 1 N N N N N N 27.021 6.550 10.393 4.979 1.794 1.415 O4 5HU 18
5HU C5 C5 C 0 1 N N N N N N 26.801 8.851 9.795 4.222 0.543 -0.342 C5 5HU 19
5HU C5A C5A C 0 1 N N N N N N 28.283 9.041 9.890 5.499 0.718 -1.123 C5A 5HU 20
5HU C6 C6 C 0 1 N N N N N N 25.923 9.880 9.454 3.204 -0.184 -0.851 C6 5HU 21
5HU O5B O5B O 0 1 N N N N N N 28.639 8.853 8.917 5.395 0.024 -2.368 O5B 5HU 22
5HU HO2P HO2P H 0 0 N N N N N N 24.628 16.406 8.922 -5.818 2.446 -0.876 HO2P 5HU 23
5HU HO3P HO3P H 0 0 N N N N N N 26.667 15.713 6.256 -5.783 -0.555 -0.620 HO3P 5HU 24
5HU "H5'" 1H5* H 0 1 N N N N N N 26.138 12.352 7.639 -3.298 -1.258 0.507 "H5'" 5HU 25
5HU "H5''" 2H5* H 0 0 N N N N N N 25.526 13.312 6.291 -2.260 0.110 0.971 "H5''" 5HU 26
5HU "HC4'" HC4* H 0 0 N N N N N N 23.660 12.813 6.528 -1.610 -1.811 -1.319 "HC4'" 5HU 27
5HU "HC3'" HC3* H 0 0 N N N N N N 22.944 13.974 8.878 -0.823 -1.802 1.649 "HC3'" 5HU 28
5HU "HO3'" HO3* H 0 0 N Y N N N N 21.040 12.281 8.390 -0.960 -4.084 1.224 "HO3'" 5HU 29
5HU "H2'" 1H2* H 0 1 N N N N N N 22.884 11.909 10.658 0.844 -3.279 -0.395 "H2'" 5HU 30
5HU "H2''" 2H2* H 0 0 N N N N N N 24.496 12.243 10.103 1.378 -2.369 1.053 "H2''" 5HU 31
5HU "HC1'" HC1* H 0 0 N N N N N N 22.612 10.115 9.296 1.180 -1.424 -1.701 "HC1'" 5HU 32
5HU HN3 HN3 H 0 1 N N N N N N 24.544 6.455 10.166 2.813 1.371 2.489 HN3 5HU 33
5HU H5A1 1H5A H 0 0 N N N N N N 28.740 8.372 10.635 6.333 0.314 -0.550 H5A1 5HU 34
5HU H5A2 2H5A H 0 0 N N N N N N 28.531 10.063 10.212 5.667 1.779 -1.311 H5A2 5HU 35
5HU HC6 HC6 H 0 1 N N N N N N 26.303 10.870 9.247 3.299 -0.645 -1.822 HC6 5HU 36
5HU HO5B HO5B H 0 0 N N N N N N 27.905 8.796 8.316 6.231 0.162 -2.835 HO5B 5HU 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5HU P OP1 DOUB N N 1
5HU P OP2 SING N N 2
5HU P OP3 SING N N 3
5HU P "O5'" SING N N 4
5HU OP2 HO2P SING N N 5
5HU OP3 HO3P SING N N 6
5HU "O5'" "C5'" SING N N 7
5HU "C5'" "C4'" SING N N 8
5HU "C5'" "H5'" SING N N 9
5HU "C5'" "H5''" SING N N 10
5HU "C4'" "O4'" SING N N 11
5HU "C4'" "C3'" SING N N 12
5HU "C4'" "HC4'" SING N N 13
5HU "O4'" "C1'" SING N N 14
5HU "C3'" "O3'" SING N N 15
5HU "C3'" "C2'" SING N N 16
5HU "C3'" "HC3'" SING N N 17
5HU "O3'" "HO3'" SING N N 18
5HU "C2'" "C1'" SING N N 19
5HU "C2'" "H2'" SING N N 20
5HU "C2'" "H2''" SING N N 21
5HU "C1'" N1 SING N N 22
5HU "C1'" "HC1'" SING N N 23
5HU N1 C2 SING N N 24
5HU N1 C6 SING N N 25
5HU C2 O2 DOUB N N 26
5HU C2 N3 SING N N 27
5HU N3 C4 SING N N 28
5HU N3 HN3 SING N N 29
5HU C4 O4 DOUB N N 30
5HU C4 C5 SING N N 31
5HU C5 C5A SING N N 32
5HU C5 C6 DOUB N N 33
5HU C5A O5B SING N N 34
5HU C5A H5A1 SING N N 35
5HU C5A H5A2 SING N N 36
5HU C6 HC6 SING N N 37
5HU O5B HO5B SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5HU SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1CO)C2OC(C(O)C2)COP(=O)(O)O
5HU SMILES_CANONICAL CACTVS 3.341 OCC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
5HU SMILES CACTVS 3.341 OCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
5HU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)CO)COP(=O)(O)O)O
5HU SMILES "OpenEye OEToolkits" 1.5.0 C1C(C(OC1N2C=C(C(=O)NC2=O)CO)COP(=O)(O)O)O
5HU InChI InChI 1.03 InChI=1S/C10H15N2O9P/c13-3-5-2-12(10(16)11-9(5)15)8-1-6(14)7(21-8)4-20-22(17,18)19/h2,6-8,13-14H,1,3-4H2,(H,11,15,16)(H2,17,18,19)/t6-,7+,8+/m0/s1
5HU InChIKey InChI 1.03 WEBVWKFGRVLCNS-XLPZGREQSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5HU "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate)"
5HU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[5-(hydroxymethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5HU 'Create component' 2002-09-26 RCSB
5HU 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 5HU
_pdbe_chem_comp_drugbank_details.drugbank_id DB03846
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate)"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 5HU
_pdbe_chem_comp_synonyms.name "5-hydroxymethyluridine-2'-deoxy-5'-monophosphate"
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 5HU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03846
_pdbe_chem_comp_drugbank_classification.parent "Pyrimidine 2'-deoxyribonucleoside monophosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside monophosphates. These are pyrimidine nucleotides with a monophosphate group  linked to the ribose moiety lacking a hydroxyl group at position 2."
#
_pdbe_chem_comp_drugbank_targets.comp_id 5HU
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03846
_pdbe_chem_comp_drugbank_targets.name 'Thymidylate kinase'
_pdbe_chem_comp_drugbank_targets.organism 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P9WKE1
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5HU P P 11.708 -4.683 1
5HU OP1 O 12.589 -5.896 2
5HU OP2 O 12.921 -3.801 3
5HU OP3 O 10.494 -5.564 4
5HU "O5'" O 10.826 -3.469 5
5HU "C5'" C 9.334 -3.626 6
5HU "C4'" C 8.453 -2.412 7
5HU "O4'" O 8.916 -0.986 8
5HU "C3'" C 6.952 -2.412 9
5HU "O3'" O 6.071 -3.626 10
5HU "C2'" C 6.489 -0.986 11
5HU "C1'" C 7.702 -0.104 12
5HU N1 N 7.702 1.396 13
5HU C2 C 9.002 2.146 14
5HU O2 O 10.301 1.396 15
5HU N3 N 9.002 3.646 16
5HU C4 C 7.702 4.396 17
5HU O4 O 7.702 5.896 18
5HU C5 C 6.404 3.646 19
5HU C5A C 5.104 4.396 20
5HU C6 C 6.404 2.146 21
5HU O5B O 3.805 3.646 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5HU P OP1 DOUBLE NONE 1
5HU P OP2 SINGLE NONE 2
5HU P OP3 SINGLE NONE 3
5HU P "O5'" SINGLE NONE 4
5HU "O5'" "C5'" SINGLE NONE 5
5HU "C4'" "C5'" SINGLE BEGINDASH 6
5HU "C4'" "O4'" SINGLE NONE 7
5HU "C4'" "C3'" SINGLE NONE 8
5HU "O4'" "C1'" SINGLE NONE 9
5HU "C3'" "O3'" SINGLE BEGINWEDGE 10
5HU "C3'" "C2'" SINGLE NONE 11
5HU "C2'" "C1'" SINGLE NONE 12
5HU "C1'" N1 SINGLE BEGINDASH 13
5HU N1 C2 SINGLE NONE 14
5HU N1 C6 SINGLE NONE 15
5HU C2 O2 DOUBLE NONE 16
5HU C2 N3 SINGLE NONE 17
5HU N3 C4 SINGLE NONE 18
5HU C4 O4 DOUBLE NONE 19
5HU C4 C5 SINGLE NONE 20
5HU C5 C5A SINGLE NONE 21
5HU C5 C6 DOUBLE NONE 22
5HU C5A O5B SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5HU MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
5HU deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
5HU phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
5HU pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5HU "C4'" S1 1
5HU "O4'" S1 1
5HU "C3'" S1 1
5HU "C2'" S1 1
5HU "C1'" S1 1
5HU N1 S1 1
5HU C2 S1 1
5HU O2 S1 1
5HU N3 S1 1
5HU C4 S1 1
5HU O4 S1 1
5HU C5 S1 1
5HU C6 S1 1
5HU "C1'" F1 1
5HU "C2'" F1 1
5HU "C3'" F1 1
5HU "O3'" F1 1
5HU "C4'" F1 1
5HU "O4'" F1 1
5HU "C5'" F1 1
5HU "O5'" F1 1
5HU OP2 F2 1
5HU P F2 1
5HU OP1 F2 1
5HU OP3 F2 1
5HU "O5'" F2 1
5HU C5 F3 1
5HU C4 F3 1
5HU N3 F3 1
5HU C2 F3 1
5HU N1 F3 1
5HU C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5HU
_pdbe_chem_comp_rdkit_properties.exactmw 338.052
_pdbe_chem_comp_rdkit_properties.amw 338.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 144.020
_pdbe_chem_comp_rdkit_properties.tpsa 171.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.468
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.725
_pdbe_chem_comp_rdkit_properties.chi0v 10.910
_pdbe_chem_comp_rdkit_properties.chi1v 6.488
_pdbe_chem_comp_rdkit_properties.chi2v 2.322
_pdbe_chem_comp_rdkit_properties.chi3v 2.322
_pdbe_chem_comp_rdkit_properties.chi4v 1.388
_pdbe_chem_comp_rdkit_properties.chi0n 25.016
_pdbe_chem_comp_rdkit_properties.chi1n 12.107
_pdbe_chem_comp_rdkit_properties.chi2n 2.007
_pdbe_chem_comp_rdkit_properties.chi3n 2.007
_pdbe_chem_comp_rdkit_properties.chi4n 1.193
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.330
_pdbe_chem_comp_rdkit_properties.kappa1 5.947
_pdbe_chem_comp_rdkit_properties.kappa2 6.424
_pdbe_chem_comp_rdkit_properties.kappa3 3.898
_pdbe_chem_comp_rdkit_properties.Phi 1.737
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5HU UniChem ChEMBL CHEMBL1160818
5HU UniChem DrugBank DB03846
5HU UniChem PDBe 5HU
5HU UniChem ZINC ZINC000013538464
5HU UniChem PubChem 447206
5HU UniChem Nikkaji J1.887.801A
5HU UniChem BRENDA 214673
5HU UniChem 'Probes And Drugs' PD059458
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5HU P 4.314 1.797 -1.034 ETKDGv3 1
5HU OP1 3.568 1.831 -2.350 ETKDGv3 2
5HU OP2 4.838 3.362 -0.664 ETKDGv3 3
5HU OP3 5.667 0.785 -1.164 ETKDGv3 4
5HU "O5'" 3.276 1.258 0.207 ETKDGv3 5
5HU "C5'" 2.970 -0.098 -0.021 ETKDGv3 6
5HU "C4'" 1.926 -0.557 1.002 ETKDGv3 7
5HU "O4'" 0.771 0.249 0.883 ETKDGv3 8
5HU "C3'" 1.540 -2.033 0.795 ETKDGv3 9
5HU "O3'" 1.705 -2.780 1.978 ETKDGv3 10
5HU "C2'" 0.092 -1.973 0.379 ETKDGv3 11
5HU "C1'" -0.345 -0.610 0.880 ETKDGv3 12
5HU N1 -1.426 -0.059 0.045 ETKDGv3 13
5HU C2 -1.163 0.525 -1.248 ETKDGv3 14
5HU O2 0.010 0.590 -1.704 ETKDGv3 15
5HU N3 -2.247 1.033 -2.024 ETKDGv3 16
5HU C4 -3.581 0.918 -1.529 ETKDGv3 17
5HU O4 -4.539 1.386 -2.201 ETKDGv3 18
5HU C5 -3.828 0.249 -0.234 ETKDGv3 19
5HU C5A -5.233 0.124 0.298 ETKDGv3 20
5HU C6 -2.790 -0.193 0.496 ETKDGv3 21
5HU O5B -5.622 1.320 0.915 ETKDGv3 22
5HU HO2P 5.301 3.272 0.207 ETKDGv3 23
5HU HO3P 5.385 0.051 -1.768 ETKDGv3 24
5HU "H5'" 3.883 -0.722 0.108 ETKDGv3 25
5HU "H5''" 2.553 -0.251 -1.043 ETKDGv3 26
5HU "HC4'" 2.354 -0.410 2.019 ETKDGv3 27
5HU "HC3'" 2.140 -2.520 -0.007 ETKDGv3 28
5HU "HO3'" 1.141 -2.368 2.685 ETKDGv3 29
5HU "H2'" -0.517 -2.790 0.826 ETKDGv3 30
5HU "H2''" 0.021 -2.028 -0.730 ETKDGv3 31
5HU "HC1'" -0.694 -0.709 1.934 ETKDGv3 32
5HU HN3 -2.067 1.482 -2.950 ETKDGv3 33
5HU H5A1 -5.323 -0.728 1.012 ETKDGv3 34
5HU H5A2 -5.932 -0.090 -0.538 ETKDGv3 35
5HU HC6 -2.982 -0.662 1.455 ETKDGv3 36
5HU HO5B -5.164 1.347 1.796 ETKDGv3 37
#