data_5J4
#
_chem_comp.id 5J4
_chem_comp.name 2-[6-(cyclobuta-1,3-dien-1-ylamino)-1,3-benzothiazol-2-yl]-1,3-thiazol-4-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H9 N3 O S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-29
_chem_comp.pdbx_modified_date 2016-09-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 299.371
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5J4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5DWV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5J4 C1 C1 C 0 1 Y N N N N N -62.137 -23.781 5.392 -3.094 0.399 0.346 C1 5J4 1
5J4 C2 C2 C 0 1 Y N N N N N -62.192 -23.508 4.036 -2.836 -0.967 0.468 C2 5J4 2
5J4 C3 C3 C 0 1 Y N N N N N -62.899 -24.283 3.191 -1.563 -1.440 0.429 C3 5J4 3
5J4 C4 C4 C 0 1 Y N N N N N -63.548 -25.329 3.660 -0.471 -0.556 0.263 C4 5J4 4
5J4 C5 C5 C 0 1 Y N N N N N -63.520 -25.655 5.028 -0.735 0.814 0.140 C5 5J4 5
5J4 C6 C6 C 0 1 Y N N N N N -62.797 -24.875 5.894 -2.044 1.286 0.182 C6 5J4 6
5J4 C8 C7 C 0 1 Y N N N N N -64.853 -27.163 3.637 1.665 0.134 0.045 C8 5J4 7
5J4 C10 C8 C 0 1 Y N N N N N -65.731 -28.272 3.114 3.128 -0.011 -0.041 C10 5J4 8
5J4 C12 C9 C 0 1 Y N N N N N -67.127 -29.874 1.851 5.604 0.154 -0.228 C12 5J4 9
5J4 C13 C10 C 0 1 Y N N N N N -67.036 -30.327 3.234 5.089 -1.076 -0.063 C13 5J4 10
5J4 N7 N1 N 0 1 Y N N N N N -64.322 -26.218 2.890 0.834 -0.844 0.202 N7 5J4 11
5J4 S9 S1 S 0 1 Y N N N N N -64.459 -27.039 5.266 0.799 1.661 -0.052 S9 5J4 12
5J4 S11 S2 S 0 1 Y N N N N N -66.324 -28.550 1.678 4.273 1.310 -0.255 S11 5J4 13
5J4 N14 N2 N 0 1 Y N N N N N -66.148 -29.283 3.956 3.782 -1.138 0.034 N14 5J4 14
5J4 N15 N3 N 0 1 N N N N N N -61.401 -22.974 6.284 -4.407 0.869 0.383 N15 5J4 15
5J4 C16 C11 C 0 1 N N N N N N -60.825 -21.655 5.910 -5.411 0.088 -0.044 C16 5J4 16
5J4 C17 C12 C 0 1 N N N N N N -59.685 -21.825 5.099 -6.885 0.182 -0.068 C17 5J4 17
5J4 C18 C13 C 0 1 N N N N N N -59.144 -20.551 5.934 -6.921 -1.085 -0.686 C18 5J4 18
5J4 C19 C14 C 0 1 N N N N N N -60.195 -21.064 7.041 -5.518 -1.232 -0.697 C19 5J4 19
5J4 O20 O1 O 0 1 N N N N N N -67.582 -31.445 3.848 5.873 -2.187 -0.002 O20 5J4 20
5J4 H1 H1 H 0 1 N N N N N N -61.656 -22.655 3.647 -3.658 -1.656 0.596 H1 5J4 21
5J4 H2 H2 H 0 1 N N N N N N -62.933 -24.049 2.137 -1.383 -2.500 0.525 H2 5J4 22
5J4 H3 H3 H 0 1 N N N N N N -62.748 -25.116 6.946 -2.241 2.343 0.087 H3 5J4 23
5J4 H5 H5 H 0 1 N N N N N N -67.669 -30.380 1.065 6.653 0.394 -0.325 H5 5J4 24
5J4 H7 H7 H 0 1 N N N N N N -61.259 -23.306 7.217 -4.594 1.760 0.717 H7 5J4 25
5J4 H9 H9 H 0 1 N N N N N N -59.343 -22.480 4.312 -7.619 0.908 0.250 H9 5J4 26
5J4 H11 H11 H 0 1 N N N N N N -58.430 -19.750 5.810 -7.729 -1.713 -1.030 H11 5J4 27
5J4 H13 H13 H 0 1 N N N N N N -60.346 -20.994 8.108 -4.823 -1.984 -1.038 H13 5J4 28
5J4 H17 H17 H 0 1 N N N N N N -67.326 -31.461 4.763 6.161 -2.416 0.892 H17 5J4 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5J4 C1 C2 SING Y N 1
5J4 C1 C6 DOUB Y N 2
5J4 C1 N15 SING N N 3
5J4 C2 C3 DOUB Y N 4
5J4 C3 C4 SING Y N 5
5J4 C4 C5 DOUB Y N 6
5J4 C4 N7 SING Y N 7
5J4 C5 C6 SING Y N 8
5J4 C5 S9 SING Y N 9
5J4 C8 C10 SING N N 10
5J4 C8 N7 DOUB Y N 11
5J4 C8 S9 SING Y N 12
5J4 C10 S11 SING Y N 13
5J4 C10 N14 DOUB Y N 14
5J4 C12 C13 DOUB Y N 15
5J4 C12 S11 SING Y N 16
5J4 C13 N14 SING Y N 17
5J4 C13 O20 SING N N 18
5J4 N15 C16 SING N N 19
5J4 C16 C17 DOUB N N 20
5J4 C16 C19 SING N N 21
5J4 C17 C18 SING N N 22
5J4 C18 C19 DOUB N N 23
5J4 C2 H1 SING N N 24
5J4 C3 H2 SING N N 25
5J4 C6 H3 SING N N 26
5J4 C12 H5 SING N N 27
5J4 N15 H7 SING N N 28
5J4 C17 H9 SING N N 29
5J4 C18 H11 SING N N 30
5J4 C19 H13 SING N N 31
5J4 O20 H17 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5J4 SMILES ACDLabs 12.01 c1(ccc3c(c1)sc(c2scc(n2)O)n3)NC4=CC=C4
5J4 InChI InChI 1.03 InChI=1S/C14H9N3OS2/c18-12-7-19-13(17-12)14-16-10-5-4-9(6-11(10)20-14)15-8-2-1-3-8/h1-7,15,18H
5J4 InChIKey InChI 1.03 AMUPGDQXMKYKJQ-UHFFFAOYSA-N
5J4 SMILES_CANONICAL CACTVS 3.385 Oc1csc(n1)c2sc3cc(NC4=CC=C4)ccc3n2
5J4 SMILES CACTVS 3.385 Oc1csc(n1)c2sc3cc(NC4=CC=C4)ccc3n2
5J4 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1cc2c(cc1NC3=CC=C3)sc(n2)c4nc(cs4)O
5J4 SMILES "OpenEye OEToolkits" 1.9.2 c1cc2c(cc1NC3=CC=C3)sc(n2)c4nc(cs4)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5J4 "SYSTEMATIC NAME" ACDLabs 12.01 2-[6-(cyclobuta-1,3-dien-1-ylamino)-1,3-benzothiazol-2-yl]-1,3-thiazol-4-ol
5J4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 2-[6-(cyclobutadienylamino)-1,3-benzothiazol-2-yl]-1,3-thiazol-4-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5J4 'Create component' 2015-09-29 RCSB
5J4 'Initial release' 2016-09-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5J4 C1 C 7.435 0.285 1
5J4 C2 C 7.435 -1.215 2
5J4 C3 C 8.734 -1.965 3
5J4 C4 C 10.033 -1.215 4
5J4 C5 C 10.033 0.285 5
5J4 C6 C 8.734 1.035 6
5J4 C8 C 12.328 -0.465 7
5J4 C10 C 13.828 -0.465 8
5J4 C12 C 16.136 -1.215 9
5J4 C13 C 16.136 0.285 10
5J4 N7 N 11.453 -1.672 11
5J4 S9 S 11.453 0.742 12
5J4 S11 S 14.710 -1.679 13
5J4 N14 N 14.710 0.749 14
5J4 N15 N 6.136 1.035 15
5J4 C16 C 4.837 0.285 16
5J4 C17 C 3.388 0.673 17
5J4 C18 C 3.000 -0.776 18
5J4 C19 C 4.449 -1.164 19
5J4 O20 O 17.350 1.167 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5J4 C1 C2 DOUBLE NONE 1
5J4 C1 C6 SINGLE NONE 2
5J4 C1 N15 SINGLE NONE 3
5J4 C2 C3 SINGLE NONE 4
5J4 C3 C4 DOUBLE NONE 5
5J4 C4 C5 SINGLE NONE 6
5J4 C4 N7 SINGLE NONE 7
5J4 C5 C6 DOUBLE NONE 8
5J4 C5 S9 SINGLE NONE 9
5J4 C8 C10 SINGLE NONE 10
5J4 C8 N7 DOUBLE NONE 11
5J4 C8 S9 SINGLE NONE 12
5J4 C10 S11 SINGLE NONE 13
5J4 C10 N14 DOUBLE NONE 14
5J4 C12 C13 DOUBLE NONE 15
5J4 C12 S11 SINGLE NONE 16
5J4 C13 N14 SINGLE NONE 17
5J4 C13 O20 SINGLE NONE 18
5J4 N15 C16 SINGLE NONE 19
5J4 C16 C17 DOUBLE NONE 20
5J4 C16 C19 SINGLE NONE 21
5J4 C17 C18 SINGLE NONE 22
5J4 C18 C19 DOUBLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5J4 MurckoScaffold S1 scaffold C1=CC(Nc2ccc3nc(-c4nccs4)sc3c2)=C1 InChI=1S/C14H9N3S2/c1-2-9(3-1)16-10-4-5-11-12(8-10)19-14(17-11)13-15-6-7-18-13/h1-8,16H WXJCKOULZRDENT-UHFFFAOYSA-N
5J4 benzothiazole F1 fragment c1ccc2scnc2c1 InChI=1S/C7H5NS/c1-2-4-7-6(3-1)8-5-9-7/h1-5H IOJUPLGTWVMSFF-UHFFFAOYSA-N
5J4 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5J4 thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5J4 C1 S1 1
5J4 C2 S1 1
5J4 C3 S1 1
5J4 C4 S1 1
5J4 C5 S1 1
5J4 C6 S1 1
5J4 C8 S1 1
5J4 C10 S1 1
5J4 C12 S1 1
5J4 C13 S1 1
5J4 N7 S1 1
5J4 S9 S1 1
5J4 S11 S1 1
5J4 N14 S1 1
5J4 N15 S1 1
5J4 C16 S1 1
5J4 C17 S1 1
5J4 C18 S1 1
5J4 C19 S1 1
5J4 C5 F1 1
5J4 S9 F1 1
5J4 C8 F1 1
5J4 N7 F1 1
5J4 C4 F1 1
5J4 C3 F1 1
5J4 C2 F1 1
5J4 C1 F1 1
5J4 C6 F1 1
5J4 C1 F2 1
5J4 C2 F2 1
5J4 C3 F2 1
5J4 C4 F2 1
5J4 C5 F2 1
5J4 C6 F2 1
5J4 C5 F3 1
5J4 C4 F3 1
5J4 N7 F3 1
5J4 C8 F3 1
5J4 S9 F3 1
5J4 C12 F3 2
5J4 C13 F3 2
5J4 N14 F3 2
5J4 C10 F3 2
5J4 S11 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 5J4
_pdbe_chem_comp_rdkit_properties.exactmw 299.019
_pdbe_chem_comp_rdkit_properties.amw 299.380
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.098
_pdbe_chem_comp_rdkit_properties.tpsa 58.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.340
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.277
_pdbe_chem_comp_rdkit_properties.chi0v 11.199
_pdbe_chem_comp_rdkit_properties.chi1v 6.995
_pdbe_chem_comp_rdkit_properties.chi2v 4.226
_pdbe_chem_comp_rdkit_properties.chi3v 4.226
_pdbe_chem_comp_rdkit_properties.chi4v 3.047
_pdbe_chem_comp_rdkit_properties.chi0n 18.566
_pdbe_chem_comp_rdkit_properties.chi1n 9.718
_pdbe_chem_comp_rdkit_properties.chi2n 2.365
_pdbe_chem_comp_rdkit_properties.chi3n 2.365
_pdbe_chem_comp_rdkit_properties.chi4n 1.502
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.180
_pdbe_chem_comp_rdkit_properties.kappa1 5.669
_pdbe_chem_comp_rdkit_properties.kappa2 4.432
_pdbe_chem_comp_rdkit_properties.kappa3 1.987
_pdbe_chem_comp_rdkit_properties.Phi 1.256
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5J4 UniChem PDBe 5J4
5J4 UniChem ZINC ZINC000584904764
5J4 UniChem PubChem 137348357
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5J4 C1 -2.148 0.434 -0.443 ETKDGv3 1
5J4 C2 -2.014 -0.366 0.645 ETKDGv3 2
5J4 C3 -0.668 -0.701 1.180 ETKDGv3 3
5J4 C4 0.405 -0.182 0.580 ETKDGv3 4
5J4 C5 0.258 0.695 -0.570 ETKDGv3 5
5J4 C6 -0.932 1.014 -1.079 ETKDGv3 6
5J4 C8 2.622 0.222 0.242 ETKDGv3 7
5J4 C10 4.066 0.137 0.474 ETKDGv3 8
5J4 C12 6.436 -0.283 1.216 ETKDGv3 9
5J4 C13 6.286 0.520 0.162 ETKDGv3 10
5J4 N7 1.761 -0.409 0.989 ETKDGv3 11
5J4 S9 1.877 1.194 -1.081 ETKDGv3 12
5J4 S11 4.831 -0.814 1.772 ETKDGv3 13
5J4 N14 4.933 0.758 -0.260 ETKDGv3 14
5J4 N15 -3.439 0.792 -0.959 ETKDGv3 15
5J4 C16 -4.570 -0.087 -0.966 ETKDGv3 16
5J4 C17 -4.792 -1.365 -0.685 ETKDGv3 17
5J4 C18 -6.193 -1.204 -1.050 ETKDGv3 18
5J4 C19 -5.970 0.065 -1.348 ETKDGv3 19
5J4 O20 7.363 1.100 -0.501 ETKDGv3 20
5J4 H1 -2.882 -0.749 1.163 ETKDGv3 21
5J4 H2 -0.564 -1.346 2.043 ETKDGv3 22
5J4 H3 -1.008 1.671 -1.935 ETKDGv3 23
5J4 H5 7.384 -0.561 1.657 ETKDGv3 24
5J4 H7 -3.538 1.701 -1.464 ETKDGv3 25
5J4 H9 -4.187 -2.194 -0.340 ETKDGv3 26
5J4 H11 -7.056 -1.856 -1.078 ETKDGv3 27
5J4 H13 -6.576 0.882 -1.718 ETKDGv3 28
5J4 H17 8.318 0.933 -0.204 ETKDGv3 29
#