data_5LK
#
_chem_comp.id 5LK
_chem_comp.name 4-{(6R,7R)-7-amino-3-[3-(4-methylpiperazin-1-yl)phenyl]-6,7-dihydropyrazolo[1,5-a]pyrimidin-6-yl}phenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H26 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-05-03
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 402.492
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5LK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3MPM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5LK N1 N1 N 0 1 Y N N N N N 24.687 9.650 51.449 2.075 1.664 -0.655 N1 5LK 1
5LK N2 N2 N 0 1 Y N N N N N 25.915 9.354 50.936 1.535 1.629 -1.934 N2 5LK 2
5LK C3 C3 C 0 1 Y N N N N N 26.637 10.395 50.815 0.438 0.912 -1.914 C3 5LK 3
5LK C5 C5 C 0 1 Y N N N N N 25.818 11.515 51.321 0.225 0.451 -0.599 C5 5LK 4
5LK C6 C6 C 0 1 Y N N N N N 24.663 10.932 51.714 1.259 0.935 0.173 C6 5LK 5
5LK N7 N7 N 0 1 N N N N N N 23.491 11.530 52.312 1.523 0.788 1.501 N7 5LK 6
5LK C8 C8 C 0 1 N N N N N N 22.531 10.791 52.729 2.714 1.063 1.929 C8 5LK 7
5LK C10 C10 C 0 1 N N R N N N 22.664 9.329 52.482 3.824 1.503 1.018 C10 5LK 8
5LK C11 C11 C 0 1 N N R N N N 23.727 8.831 51.792 3.290 2.320 -0.163 C11 5LK 9
5LK N12 N12 N 0 1 N N N N N N 23.955 7.555 51.515 2.972 3.684 0.281 N12 5LK 10
5LK C15 C15 C 0 1 Y N N N N N 21.535 8.495 53.014 4.540 0.287 0.491 C15 5LK 11
5LK C16 C16 C 0 1 Y N N N N N 21.824 7.823 54.223 5.889 0.115 0.745 C16 5LK 12
5LK C18 C18 C 0 1 Y N N N N N 20.858 7.021 54.815 6.547 -0.999 0.263 C18 5LK 13
5LK C20 C20 C 0 1 Y N N N N N 19.596 6.917 54.209 5.855 -1.947 -0.477 C20 5LK 14
5LK C21 C21 C 0 1 Y N N N N N 19.296 7.600 53.005 4.503 -1.772 -0.731 C21 5LK 15
5LK C23 C23 C 0 1 Y N N N N N 20.279 8.391 52.402 3.847 -0.659 -0.242 C23 5LK 16
5LK O25 O25 O 0 1 N N N N N N 18.644 6.116 54.822 6.501 -3.044 -0.953 O25 5LK 17
5LK C27 C27 C 0 1 Y N N N N N 26.236 12.972 51.399 -0.900 -0.394 -0.134 C27 5LK 18
5LK C28 C28 C 0 1 Y N N N N N 27.535 13.358 51.002 -2.212 -0.049 -0.453 C28 5LK 19
5LK C30 C30 C 0 1 Y N N N N N 27.968 14.693 51.092 -3.260 -0.844 -0.015 C30 5LK 20
5LK C31 C31 C 0 1 Y N N N N N 27.066 15.643 51.583 -3.000 -1.981 0.741 C31 5LK 21
5LK C33 C33 C 0 1 Y N N N N N 25.778 15.294 51.994 -1.699 -2.323 1.058 C33 5LK 22
5LK C35 C35 C 0 1 Y N N N N N 25.365 13.953 51.901 -0.649 -1.540 0.620 C35 5LK 23
5LK N37 N37 N 0 1 N N N N N N 29.281 15.113 50.672 -4.577 -0.502 -0.332 N37 5LK 24
5LK C38 C38 C 0 1 N N N N N N 30.327 14.069 50.590 -5.524 -1.475 0.229 C38 5LK 25
5LK C41 C41 C 0 1 N N N N N N 31.738 14.679 50.325 -6.945 -1.110 -0.206 C41 5LK 26
5LK N44 N44 N 0 1 N N N N N N 31.745 15.504 49.086 -7.260 0.251 0.251 N44 5LK 27
5LK C45 C45 C 0 1 N N N N N N 30.721 16.576 49.124 -6.313 1.224 -0.310 C45 5LK 28
5LK C48 C48 C 0 1 N N N N N N 29.323 15.991 49.472 -4.892 0.859 0.125 C48 5LK 29
5LK C51 C51 C 0 1 N N N N N N 33.121 16.000 48.802 -8.644 0.610 -0.083 C51 5LK 30
5LK H3 H3 H 0 1 N N N N N N 27.642 10.448 50.423 -0.197 0.708 -2.764 H3 5LK 31
5LK H8 H8 H 0 1 N N N N N N 21.671 11.207 53.233 2.918 0.973 2.985 H8 5LK 32
5LK H10 H10 H 0 1 N N N N N N 23.433 8.561 52.310 4.528 2.114 1.583 H10 5LK 33
5LK HN12 HN12 H 0 0 N N N N N N 23.174 7.005 51.810 2.596 4.233 -0.477 HN12 5LK 34
5LK H16 H16 H 0 1 N N N N N N 22.794 7.933 54.685 6.427 0.853 1.321 H16 5LK 35
5LK H18 H18 H 0 1 N N N N N N 21.074 6.485 55.728 7.601 -1.133 0.462 H18 5LK 36
5LK H21 H21 H 0 1 N N N N N N 18.317 7.511 52.557 3.961 -2.509 -1.307 H21 5LK 37
5LK H23 H23 H 0 1 N N N N N N 20.073 8.913 51.479 2.793 -0.525 -0.435 H23 5LK 38
5LK HO25 HO25 H 0 0 N N N N N N 17.841 6.132 54.314 6.493 -3.798 -0.348 HO25 5LK 39
5LK H28 H28 H 0 1 N N N N N N 28.213 12.609 50.620 -2.411 0.836 -1.040 H28 5LK 40
5LK H31 H31 H 0 1 N N N N N N 27.375 16.676 51.646 -3.817 -2.600 1.082 H31 5LK 41
5LK H33 H33 H 0 1 N N N N N N 25.106 16.046 52.379 -1.502 -3.207 1.646 H33 5LK 42
5LK H35 H35 H 0 1 N N N N N N 24.371 13.675 52.218 0.367 -1.813 0.865 H35 5LK 43
5LK H38 H38 H 0 1 N N N N N N 30.354 13.521 51.544 -5.277 -2.473 -0.133 H38 5LK 44
5LK H38A H38A H 0 0 N N N N N N 30.078 13.385 49.765 -5.461 -1.458 1.317 H38A 5LK 45
5LK H41 H41 H 0 1 N N N N N N 32.017 15.315 51.178 -7.015 -1.154 -1.293 H41 5LK 46
5LK H41A H41A H 0 0 N N N N N N 32.464 13.861 50.212 -7.652 -1.814 0.233 H41A 5LK 47
5LK H45 H45 H 0 1 N N N N N N 31.002 17.314 49.890 -6.375 1.207 -1.398 H45 5LK 48
5LK H45A H45A H 0 0 N N N N N N 30.672 17.060 48.138 -6.559 2.222 0.052 H45A 5LK 49
5LK H48 H48 H 0 1 N N N N N N 28.645 16.838 49.656 -4.822 0.903 1.212 H48 5LK 50
5LK H48A H48A H 0 0 N N N N N N 28.990 15.393 48.611 -4.185 1.563 -0.314 H48A 5LK 51
5LK H51 H51 H 0 1 N N N N N N 33.110 16.607 47.885 -9.328 -0.088 0.401 H51 5LK 52
5LK H51A H51A H 0 0 N N N N N N 33.470 16.615 49.645 -8.851 1.622 0.267 H51A 5LK 53
5LK H51B H51B H 0 0 N N N N N N 33.799 15.144 48.667 -8.782 0.564 -1.163 H51B 5LK 54
5LK H25 H25 H 0 1 N N N N N N 22.694 8.589 51.500 4.037 2.354 -0.955 H25 5LK 55
5LK H26 H26 H 0 1 N N N N N N 24.086 7.446 50.530 2.339 3.670 1.066 H26 5LK 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5LK N1 C6 SING Y N 1
5LK N1 C11 SING N N 2
5LK N2 N1 SING Y N 3
5LK C3 N2 DOUB Y N 4
5LK C3 C5 SING Y N 5
5LK C3 H3 SING N N 6
5LK C5 C6 DOUB Y N 7
5LK C5 C27 SING Y N 8
5LK C6 N7 SING N N 9
5LK N7 C8 DOUB N N 10
5LK C8 H8 SING N N 11
5LK C10 C8 SING N N 12
5LK C10 C15 SING N N 13
5LK C10 H10 SING N N 14
5LK C11 C10 SING N N 15
5LK N12 C11 SING N N 16
5LK N12 HN12 SING N N 17
5LK C15 C16 SING Y N 18
5LK C16 C18 DOUB Y N 19
5LK C16 H16 SING N N 20
5LK C18 H18 SING N N 21
5LK C20 C18 SING Y N 22
5LK C20 O25 SING N N 23
5LK C21 C20 DOUB Y N 24
5LK C21 H21 SING N N 25
5LK C23 C15 DOUB Y N 26
5LK C23 C21 SING Y N 27
5LK C23 H23 SING N N 28
5LK O25 HO25 SING N N 29
5LK C27 C35 SING Y N 30
5LK C28 C27 DOUB Y N 31
5LK C28 C30 SING Y N 32
5LK C28 H28 SING N N 33
5LK C30 C31 DOUB Y N 34
5LK C31 C33 SING Y N 35
5LK C31 H31 SING N N 36
5LK C33 H33 SING N N 37
5LK C35 C33 DOUB Y N 38
5LK C35 H35 SING N N 39
5LK N37 C30 SING N N 40
5LK C38 N37 SING N N 41
5LK C38 H38 SING N N 42
5LK C38 H38A SING N N 43
5LK C41 C38 SING N N 44
5LK C41 H41 SING N N 45
5LK C41 H41A SING N N 46
5LK N44 C41 SING N N 47
5LK N44 C45 SING N N 48
5LK C45 C48 SING N N 49
5LK C45 H45 SING N N 50
5LK C45 H45A SING N N 51
5LK C48 N37 SING N N 52
5LK C48 H48 SING N N 53
5LK C48 H48A SING N N 54
5LK C51 N44 SING N N 55
5LK C51 H51 SING N N 56
5LK C51 H51A SING N N 57
5LK C51 H51B SING N N 58
5LK C11 H25 SING N N 59
5LK N12 H26 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5LK SMILES ACDLabs 12.01 N2=CC(c1ccc(O)cc1)C(N)n3ncc(c23)c5cccc(N4CCN(C)CC4)c5
5LK SMILES_CANONICAL CACTVS 3.370 CN1CCN(CC1)c2cccc(c2)c3cnn4[C@@H](N)[C@@H](C=Nc34)c5ccc(O)cc5
5LK SMILES CACTVS 3.370 CN1CCN(CC1)c2cccc(c2)c3cnn4[CH](N)[CH](C=Nc34)c5ccc(O)cc5
5LK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CN1CCN(CC1)c2cccc(c2)c3cnn4c3N=C[C@H](C4N)c5ccc(cc5)O
5LK SMILES "OpenEye OEToolkits" 1.7.0 CN1CCN(CC1)c2cccc(c2)c3cnn4c3N=CC(C4N)c5ccc(cc5)O
5LK InChI InChI 1.03 InChI=1S/C23H26N6O/c1-27-9-11-28(12-10-27)18-4-2-3-17(13-18)21-15-26-29-22(24)20(14-25-23(21)29)16-5-7-19(30)8-6-16/h2-8,13-15,20,22,30H,9-12,24H2,1H3/t20-,22+/m0/s1
5LK InChIKey InChI 1.03 KIMZUJNGIVVWNZ-RBBKRZOGSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5LK "SYSTEMATIC NAME" ACDLabs 12.01 4-{(6R,7R)-7-amino-3-[3-(4-methylpiperazin-1-yl)phenyl]-6,7-dihydropyrazolo[1,5-a]pyrimidin-6-yl}phenol
5LK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 4-[(6R)-7-azanyl-3-[3-(4-methylpiperazin-1-yl)phenyl]-6,7-dihydropyrazolo[1,5-a]pyrimidin-6-yl]phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5LK 'Create component' 2010-05-03 RCSB
5LK 'Modify aromatic_flag' 2011-06-04 RCSB
5LK 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5LK N1 N 11.600 -2.081 1
5LK N2 N 13.019 -2.538 2
5LK C3 C 13.894 -1.331 3
5LK C5 C 13.019 -0.124 4
5LK C6 C 11.600 -0.581 5
5LK N7 N 10.301 0.169 6
5LK C8 C 9.002 -0.581 7
5LK C10 C 9.002 -2.081 8
5LK C11 C 10.301 -2.831 9
5LK N12 N 10.301 -4.331 10
5LK C15 C 7.702 -2.831 11
5LK C16 C 6.404 -2.081 12
5LK C18 C 5.104 -2.831 13
5LK C20 C 5.104 -4.331 14
5LK C21 C 6.404 -5.081 15
5LK C23 C 7.702 -4.331 16
5LK O25 O 3.805 -5.081 17
5LK C27 C 13.485 1.302 18
5LK C28 C 14.953 1.611 19
5LK C30 C 15.419 3.037 20
5LK C31 C 14.417 4.153 21
5LK C33 C 12.949 3.844 22
5LK C35 C 12.483 2.418 23
5LK N37 N 16.886 3.346 24
5LK C38 C 17.888 2.230 25
5LK C41 C 19.356 2.539 26
5LK N44 N 19.822 3.965 27
5LK C45 C 18.820 5.081 28
5LK C48 C 17.352 4.772 29
5LK C51 C 21.290 4.274 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5LK N1 C6 SINGLE NONE 1
5LK N1 C11 SINGLE NONE 2
5LK N2 N1 SINGLE NONE 3
5LK C3 N2 DOUBLE NONE 4
5LK C3 C5 SINGLE NONE 5
5LK C5 C6 DOUBLE NONE 6
5LK C5 C27 SINGLE NONE 7
5LK C6 N7 SINGLE NONE 8
5LK N7 C8 DOUBLE NONE 9
5LK C10 C8 SINGLE NONE 10
5LK C10 C15 SINGLE BEGINDASH 11
5LK C11 C10 SINGLE NONE 12
5LK C11 N12 SINGLE BEGINWEDGE 13
5LK C15 C16 DOUBLE NONE 14
5LK C16 C18 SINGLE NONE 15
5LK C20 C18 DOUBLE NONE 16
5LK C20 O25 SINGLE NONE 17
5LK C21 C20 SINGLE NONE 18
5LK C23 C15 SINGLE NONE 19
5LK C23 C21 DOUBLE NONE 20
5LK C27 C35 SINGLE NONE 21
5LK C28 C27 DOUBLE NONE 22
5LK C28 C30 SINGLE NONE 23
5LK C30 C31 DOUBLE NONE 24
5LK C31 C33 SINGLE NONE 25
5LK C35 C33 DOUBLE NONE 26
5LK N37 C30 SINGLE NONE 27
5LK C38 N37 SINGLE NONE 28
5LK C41 C38 SINGLE NONE 29
5LK N44 C41 SINGLE NONE 30
5LK N44 C45 SINGLE NONE 31
5LK C45 C48 SINGLE NONE 32
5LK C48 N37 SINGLE NONE 33
5LK C51 N44 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5LK MurckoScaffold S1 scaffold 'C1=Nc2c(-c3cccc(N4CCNCC4)c3)cnn2C[C@@H]1c1ccccc1' InChI=1S/C22H23N5/c1-2-5-17(6-3-1)19-14-24-22-21(15-25-27(22)16-19)18-7-4-8-20(13-18)26-11-9-23-10-12-26/h1-8,13-15,19,23H,9-12,16H2/t19-/m1/s1 JCZBNCANBQXSTL-LJQANCHMSA-N
5LK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5LK piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
5LK pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
5LK Z57912392 F4 fragment 'Nc1[nH]ncc1-c1ccccc1' InChI=1S/C9H9N3/c10-9-8(6-11-12-9)7-4-2-1-3-5-7/h1-6H,(H3,10,11,12) QEHKQNYBBLCFIJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5LK N1 S1 1
5LK N2 S1 1
5LK C3 S1 1
5LK C5 S1 1
5LK C6 S1 1
5LK N7 S1 1
5LK C8 S1 1
5LK C10 S1 1
5LK C11 S1 1
5LK C15 S1 1
5LK C16 S1 1
5LK C18 S1 1
5LK C20 S1 1
5LK C21 S1 1
5LK C23 S1 1
5LK C27 S1 1
5LK C28 S1 1
5LK C30 S1 1
5LK C31 S1 1
5LK C33 S1 1
5LK C35 S1 1
5LK N37 S1 1
5LK C38 S1 1
5LK C41 S1 1
5LK N44 S1 1
5LK C45 S1 1
5LK C48 S1 1
5LK C15 F1 1
5LK C16 F1 1
5LK C18 F1 1
5LK C20 F1 1
5LK C21 F1 1
5LK C23 F1 1
5LK C27 F1 2
5LK C35 F1 2
5LK C33 F1 2
5LK C31 F1 2
5LK C30 F1 2
5LK C28 F1 2
5LK N37 F2 1
5LK C38 F2 1
5LK C41 F2 1
5LK N44 F2 1
5LK C45 F2 1
5LK C48 F2 1
5LK C3 F3 1
5LK C5 F3 1
5LK C6 F3 1
5LK N1 F3 1
5LK N2 F3 1
5LK N7 F4 1
5LK C6 F4 1
5LK N1 F4 1
5LK N2 F4 1
5LK C3 F4 1
5LK C5 F4 1
5LK C27 F4 1
5LK C35 F4 1
5LK C33 F4 1
5LK C31 F4 1
5LK C30 F4 1
5LK C28 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5LK
_pdbe_chem_comp_rdkit_properties.exactmw 402.217
_pdbe_chem_comp_rdkit_properties.amw 402.502
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.304
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 212.342
_pdbe_chem_comp_rdkit_properties.tpsa 82.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.306
_pdbe_chem_comp_rdkit_properties.CrippenMR 115.751
_pdbe_chem_comp_rdkit_properties.chi0v 14.592
_pdbe_chem_comp_rdkit_properties.chi1v 8.087
_pdbe_chem_comp_rdkit_properties.chi2v 3.869
_pdbe_chem_comp_rdkit_properties.chi3v 3.869
_pdbe_chem_comp_rdkit_properties.chi4v 2.519
_pdbe_chem_comp_rdkit_properties.chi0n 40.592
_pdbe_chem_comp_rdkit_properties.chi1n 20.890
_pdbe_chem_comp_rdkit_properties.chi2n 3.869
_pdbe_chem_comp_rdkit_properties.chi3n 3.869
_pdbe_chem_comp_rdkit_properties.chi4n 2.519
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.160
_pdbe_chem_comp_rdkit_properties.kappa1 5.547
_pdbe_chem_comp_rdkit_properties.kappa2 7.588
_pdbe_chem_comp_rdkit_properties.kappa3 3.358
_pdbe_chem_comp_rdkit_properties.Phi 1.403
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5LK UniChem PDBe 5LK
5LK UniChem ZINC ZINC000058660822
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5LK N1 -2.459 -0.914 0.973 ETKDGv3 1
5LK N2 -1.707 -2.039 1.323 ETKDGv3 2
5LK C3 -0.492 -1.842 0.915 ETKDGv3 3
5LK C5 -0.389 -0.563 0.188 ETKDGv3 4
5LK C6 -1.614 -0.057 0.245 ETKDGv3 5
5LK N7 -2.127 1.093 -0.422 ETKDGv3 6
5LK C8 -3.392 1.389 -0.330 ETKDGv3 7
5LK C10 -4.346 0.610 0.573 ETKDGv3 8
5LK C11 -3.905 -0.869 0.781 ETKDGv3 9
5LK N12 -4.594 -1.448 1.936 ETKDGv3 10
5LK C15 -5.759 0.671 0.031 ETKDGv3 11
5LK C16 -6.782 1.046 0.822 ETKDGv3 12
5LK C18 -8.163 1.079 0.296 ETKDGv3 13
5LK C20 -8.410 0.722 -0.974 ETKDGv3 14
5LK C21 -7.295 0.296 -1.845 ETKDGv3 15
5LK C23 -6.043 0.268 -1.372 ETKDGv3 16
5LK O25 -9.706 0.747 -1.484 ETKDGv3 17
5LK C27 0.804 -0.032 -0.513 ETKDGv3 18
5LK C28 2.036 -0.331 -0.060 ETKDGv3 19
5LK C30 3.249 0.190 -0.744 ETKDGv3 20
5LK C31 3.103 0.961 -1.836 ETKDGv3 21
5LK C33 1.758 1.275 -2.353 ETKDGv3 22
5LK C35 0.670 0.807 -1.732 ETKDGv3 23
5LK N37 4.562 -0.121 -0.233 ETKDGv3 24
5LK C38 5.573 -0.678 -1.146 ETKDGv3 25
5LK C41 6.869 -0.995 -0.403 ETKDGv3 26
5LK N44 7.187 0.136 0.481 ETKDGv3 27
5LK C45 6.227 0.232 1.605 ETKDGv3 28
5LK C48 4.783 -0.165 1.220 ETKDGv3 29
5LK C51 8.563 0.025 0.988 ETKDGv3 30
5LK H3 0.301 -2.566 1.048 ETKDGv3 31
5LK H8 -3.752 2.280 -0.828 ETKDGv3 32
5LK H10 -4.300 1.120 1.561 ETKDGv3 33
5LK HN12 -4.365 -2.467 1.980 ETKDGv3 34
5LK H16 -6.612 1.327 1.854 ETKDGv3 35
5LK H18 -8.970 1.391 0.946 ETKDGv3 36
5LK H21 -7.494 0.002 -2.868 ETKDGv3 37
5LK H23 -5.236 -0.050 -2.020 ETKDGv3 38
5LK HO25 -10.497 1.033 -0.918 ETKDGv3 39
5LK H28 2.156 -0.951 0.819 ETKDGv3 40
5LK H31 3.963 1.376 -2.343 ETKDGv3 41
5LK H33 1.655 1.880 -3.245 ETKDGv3 42
5LK H35 -0.301 1.023 -2.154 ETKDGv3 43
5LK H38 5.181 -1.601 -1.625 ETKDGv3 44
5LK H38A 5.805 0.062 -1.940 ETKDGv3 45
5LK H41 7.675 -1.147 -1.155 ETKDGv3 46
5LK H41A 6.757 -1.937 0.182 ETKDGv3 47
5LK H45 6.543 -0.407 2.461 ETKDGv3 48
5LK H45A 6.221 1.284 1.964 ETKDGv3 49
5LK H48 4.581 -1.199 1.575 ETKDGv3 50
5LK H48A 4.073 0.515 1.740 ETKDGv3 51
5LK H51 8.717 -0.935 1.530 ETKDGv3 52
5LK H51A 8.788 0.870 1.674 ETKDGv3 53
5LK H51B 9.284 0.083 0.144 ETKDGv3 54
5LK H25 -4.154 -1.463 -0.126 ETKDGv3 55
5LK H26 -4.219 -1.010 2.809 ETKDGv3 56
#