data_5MC
#
_chem_comp.id 5MC
_chem_comp.name "5-METHYLCYTIDINE-5'-MONOPHOSPHATE"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C10 H16 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id C
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 337.223
_chem_comp.one_letter_code C
_chem_comp.three_letter_code 5MC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EVV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5MC P P P 0 1 N N N N N N 50.109 -7.949 10.151 1.130 -0.100 -4.232 P 5MC 1
5MC OP1 O1P O 0 1 N N N N N N 48.717 -7.449 10.362 1.708 1.219 -3.893 OP1 5MC 2
5MC OP2 O2P O 0 1 N N N N N N 51.024 -8.102 11.312 2.287 -1.062 -4.803 OP2 5MC 3
5MC OP3 O3P O 0 1 N Y N N N N 50.001 -9.367 9.401 -0.013 0.085 -5.351 OP3 5MC 4
5MC "O5'" O5* O 0 1 N N N N N N 50.830 -6.988 9.102 0.487 -0.759 -2.912 "O5'" 5MC 5
5MC "C5'" C5* C 0 1 N N N N N N 52.244 -6.857 9.086 -0.528 0.136 -2.455 "C5'" 5MC 6
5MC "C4'" C4* C 0 1 N N R N N N 52.679 -6.121 7.845 -1.182 -0.434 -1.196 "C4'" 5MC 7
5MC "O4'" O4* O 0 1 N N N N N N 51.896 -6.566 6.703 -0.206 -0.572 -0.140 "O4'" 5MC 8
5MC "C3'" C3* C 0 1 N N S N N N 52.401 -4.635 7.876 -2.231 0.553 -0.637 "C3'" 5MC 9
5MC "O3'" O3* O 0 1 N N N N N N 53.401 -3.947 8.602 -3.545 0.178 -1.056 "O3'" 5MC 10
5MC "C2'" C2* C 0 1 N N R N N N 52.458 -4.287 6.398 -2.092 0.421 0.897 "C2'" 5MC 11
5MC "O2'" O2* O 0 1 N N N N N N 53.767 -4.152 5.882 -3.317 -0.036 1.473 "O2'" 5MC 12
5MC "C1'" C1* C 0 1 N N R N N N 51.743 -5.489 5.790 -0.974 -0.627 1.082 "C1'" 5MC 13
5MC N1 N1 N 0 1 N N N N N N 50.312 -5.198 5.627 -0.131 -0.278 2.228 N1 5MC 14
5MC C2 C2 C 0 1 N N N N N N 49.938 -4.219 4.708 0.505 0.906 2.255 C2 5MC 15
5MC O2 O2 O 0 1 N N N N N N 50.821 -3.604 4.096 0.374 1.678 1.320 O2 5MC 16
5MC N3 N3 N 0 1 N N N N N N 48.631 -3.956 4.514 1.277 1.249 3.285 N3 5MC 17
5MC C4 C4 C 0 1 N N N N N N 47.714 -4.612 5.212 1.432 0.430 4.317 C4 5MC 18
5MC N4 N4 N 0 1 N N N N N N 46.430 -4.333 4.969 2.231 0.794 5.375 N4 5MC 19
5MC C5 C5 C 0 1 N N N N N N 48.064 -5.586 6.182 0.782 -0.821 4.318 C5 5MC 20
5MC C6 C6 C 0 1 N N N N N N 49.363 -5.859 6.349 0.001 -1.155 3.263 C6 5MC 21
5MC CM5 CM5 C 0 1 N N N N N N 46.991 -6.163 7.045 0.949 -1.769 5.477 CM5 5MC 22
5MC HOP2 2HOP H 0 0 N N N N N N 51.909 -8.419 11.177 2.645 -0.632 -5.592 HOP2 5MC 23
5MC HOP3 3HOP H 0 0 N N N N N N 50.886 -9.684 9.266 -0.362 -0.795 -5.542 HOP3 5MC 24
5MC "H5'" 1H5* H 0 1 N N N N N N 52.629 -6.375 10.014 -1.281 0.258 -3.233 "H5'" 5MC 25
5MC "H5''" 2H5* H 0 0 N N N N N N 52.756 -7.842 9.189 -0.082 1.104 -2.226 "H5''" 5MC 26
5MC "H4'" H4* H 0 1 N N N N N N 53.773 -6.324 7.781 -1.646 -1.396 -1.412 "H4'" 5MC 27
5MC "H3'" H3* H 0 1 N N N N N N 51.441 -4.358 8.372 -2.005 1.570 -0.957 "H3'" 5MC 28
5MC "HO3'" *HO3 H 0 0 N Y N N N N 53.226 -3.013 8.621 -4.154 0.828 -0.679 "HO3'" 5MC 29
5MC "H2'" H2* H 0 1 N N N N N N 52.005 -3.293 6.172 -1.797 1.374 1.337 "H2'" 5MC 30
5MC "HO2'" *HO2 H 0 0 N N N N N N 53.802 -3.934 4.957 -3.987 0.631 1.272 "HO2'" 5MC 31
5MC "H1'" H1* H 0 1 N N N N N N 52.170 -5.734 4.789 -1.403 -1.620 1.215 "H1'" 5MC 32
5MC HN41 1HN4 H 0 0 N N N N N N 45.724 -4.837 5.505 2.683 1.653 5.369 HN41 5MC 33
5MC HN42 2HN4 H 0 0 N N N N N N 46.243 -4.452 3.973 2.343 0.194 6.129 HN42 5MC 34
5MC H6 H6 H 0 1 N N N N N N 49.651 -6.630 7.082 -0.509 -2.106 3.242 H6 5MC 35
5MC HM51 1HM5 H 0 0 N N N N N N 47.266 -6.928 7.807 1.610 -1.322 6.220 HM51 5MC 36
5MC HM52 2HM5 H 0 0 N N N N N N 46.449 -5.329 7.551 -0.023 -1.966 5.928 HM52 5MC 37
5MC HM53 3HM5 H 0 0 N N N N N N 46.188 -6.578 6.391 1.381 -2.705 5.122 HM53 5MC 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5MC P OP1 DOUB N N 1
5MC P OP2 SING N N 2
5MC P OP3 SING N N 3
5MC P "O5'" SING N N 4
5MC OP2 HOP2 SING N N 5
5MC OP3 HOP3 SING N N 6
5MC "O5'" "C5'" SING N N 7
5MC "C5'" "C4'" SING N N 8
5MC "C5'" "H5'" SING N N 9
5MC "C5'" "H5''" SING N N 10
5MC "C4'" "O4'" SING N N 11
5MC "C4'" "C3'" SING N N 12
5MC "C4'" "H4'" SING N N 13
5MC "O4'" "C1'" SING N N 14
5MC "C3'" "O3'" SING N N 15
5MC "C3'" "C2'" SING N N 16
5MC "C3'" "H3'" SING N N 17
5MC "O3'" "HO3'" SING N N 18
5MC "C2'" "O2'" SING N N 19
5MC "C2'" "C1'" SING N N 20
5MC "C2'" "H2'" SING N N 21
5MC "O2'" "HO2'" SING N N 22
5MC "C1'" N1 SING N N 23
5MC "C1'" "H1'" SING N N 24
5MC N1 C2 SING N N 25
5MC N1 C6 SING N N 26
5MC C2 O2 DOUB N N 27
5MC C2 N3 SING N N 28
5MC N3 C4 DOUB N N 29
5MC C4 N4 SING N N 30
5MC C4 C5 SING N N 31
5MC N4 HN41 SING N N 32
5MC N4 HN42 SING N N 33
5MC C5 C6 DOUB N N 34
5MC C5 CM5 SING N N 35
5MC C6 H6 SING N N 36
5MC CM5 HM51 SING N N 37
5MC CM5 HM52 SING N N 38
5MC CM5 HM53 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5MC SMILES ACDLabs 10.04 O=C1N=C(N)C(=CN1C2OC(C(O)C2O)COP(=O)(O)O)C
5MC SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N=C1N
5MC SMILES CACTVS 3.341 CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N=C1N
5MC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
5MC SMILES "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)O
5MC InChI InChI 1.03 InChI=1S/C10H16N3O8P/c1-4-2-13(10(16)12-8(4)11)9-7(15)6(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14-15H,3H2,1H3,(H2,11,12,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1
5MC InChIKey InChI 1.03 NJQONZSFUKNYOY-JXOAFFINSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5MC "SYSTEMATIC NAME" ACDLabs 10.04 "5-methylcytidine 5'-(dihydrogen phosphate)"
5MC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5MC 'Create component' 1999-07-08 RCSB
5MC 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 5MC
_pdbe_chem_comp_drugbank_details.drugbank_id DB01995
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "5-methylcytidine 5'-monophosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 3590-36-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
5MC 5-methyl-CMP DrugBank ?
5MC "5-methylcytidine-5'-monophosphate" DrugBank ?
5MC '5-methylcytidylic acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 5MC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01995
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine ribonucleoside monophosphates. These are pyrimidine ribobucleotides with monophosphate group  linked to the ribose moiety.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5MC P P 10.336 -4.915 1
5MC OP1 O 11.218 -6.129 2
5MC OP2 O 11.550 -4.033 3
5MC OP3 O 9.123 -5.797 4
5MC "O5'" O 9.455 -3.701 5
5MC "C5'" C 7.963 -3.858 6
5MC "C4'" C 7.081 -2.645 7
5MC "O4'" O 7.545 -1.218 8
5MC "C3'" C 5.581 -2.645 9
5MC "O3'" O 4.699 -3.858 10
5MC "C2'" C 5.118 -1.218 11
5MC "O2'" O 3.691 -0.755 12
5MC "C1'" C 6.331 -0.337 13
5MC N1 N 6.331 1.163 14
5MC C2 C 7.630 1.914 15
5MC O2 O 8.929 1.163 16
5MC N3 N 7.630 3.413 17
5MC C4 C 6.331 4.163 18
5MC N4 N 6.331 5.663 19
5MC C5 C 5.032 3.413 20
5MC C6 C 5.032 1.914 21
5MC CM5 C 3.733 4.163 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5MC P OP1 DOUBLE NONE 1
5MC P OP2 SINGLE NONE 2
5MC P OP3 SINGLE NONE 3
5MC P "O5'" SINGLE NONE 4
5MC "O5'" "C5'" SINGLE NONE 5
5MC "C4'" "C5'" SINGLE BEGINDASH 6
5MC "C4'" "O4'" SINGLE NONE 7
5MC "C4'" "C3'" SINGLE NONE 8
5MC "O4'" "C1'" SINGLE NONE 9
5MC "C3'" "O3'" SINGLE BEGINWEDGE 10
5MC "C3'" "C2'" SINGLE NONE 11
5MC "C2'" "O2'" SINGLE BEGINWEDGE 12
5MC "C2'" "C1'" SINGLE NONE 13
5MC "C1'" N1 SINGLE BEGINDASH 14
5MC N1 C2 SINGLE NONE 15
5MC N1 C6 SINGLE NONE 16
5MC C2 O2 DOUBLE NONE 17
5MC C2 N3 SINGLE NONE 18
5MC N3 C4 DOUBLE NONE 19
5MC C4 N4 SINGLE NONE 20
5MC C4 C5 SINGLE NONE 21
5MC C5 C6 DOUBLE NONE 22
5MC C5 CM5 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5MC MurckoScaffold S1 scaffold 'O=c1ncccn1[C@H]1CCCO1' InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1 AKXKPKRAUWTVBW-SSDOTTSWSA-N
5MC phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
5MC pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
5MC ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5MC "C4'" S1 1
5MC "O4'" S1 1
5MC "C3'" S1 1
5MC "C2'" S1 1
5MC "C1'" S1 1
5MC N1 S1 1
5MC C2 S1 1
5MC O2 S1 1
5MC N3 S1 1
5MC C4 S1 1
5MC C5 S1 1
5MC C6 S1 1
5MC OP2 F1 1
5MC P F1 1
5MC OP1 F1 1
5MC OP3 F1 1
5MC "O5'" F1 1
5MC C5 F2 1
5MC C4 F2 1
5MC N3 F2 1
5MC C2 F2 1
5MC N1 F2 1
5MC C6 F2 1
5MC "C2'" F3 1
5MC "C3'" F3 1
5MC "C4'" F3 1
5MC "O4'" F3 1
5MC "C1'" F3 1
5MC "C5'" F3 1
5MC "O5'" F3 1
5MC "O3'" F3 1
5MC "O2'" F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5MC
_pdbe_chem_comp_rdkit_properties.exactmw 337.068
_pdbe_chem_comp_rdkit_properties.amw 337.225
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 146.662
_pdbe_chem_comp_rdkit_properties.tpsa 177.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.673
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.584
_pdbe_chem_comp_rdkit_properties.chi0v 10.949
_pdbe_chem_comp_rdkit_properties.chi1v 6.507
_pdbe_chem_comp_rdkit_properties.chi2v 2.414
_pdbe_chem_comp_rdkit_properties.chi3v 2.414
_pdbe_chem_comp_rdkit_properties.chi4v 1.440
_pdbe_chem_comp_rdkit_properties.chi0n 26.055
_pdbe_chem_comp_rdkit_properties.chi1n 12.574
_pdbe_chem_comp_rdkit_properties.chi2n 2.099
_pdbe_chem_comp_rdkit_properties.chi3n 2.099
_pdbe_chem_comp_rdkit_properties.chi4n 1.245
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.330
_pdbe_chem_comp_rdkit_properties.kappa1 5.636
_pdbe_chem_comp_rdkit_properties.kappa2 6.048
_pdbe_chem_comp_rdkit_properties.kappa3 3.524
_pdbe_chem_comp_rdkit_properties.Phi 1.549
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5MC UniChem ChEMBL CHEMBL72388
5MC UniChem DrugBank DB01995
5MC UniChem PDBe 5MC
5MC UniChem ChEBI 74725
5MC UniChem ZINC ZINC000013511986
5MC UniChem SureChEMBL SCHEMBL3504106
5MC UniChem ACTor 3590-36-1
5MC UniChem Nikkaji J2.565.296G
5MC UniChem BRENDA 112748
5MC UniChem ChemicalBook CB12684836
5MC UniChem 'Probes And Drugs' PD060192
5MC UniChem ACTor 117309-80-5
5MC UniChem PubChem 192785
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5MC P -2.916 -2.238 0.310 ETKDGv3 1
5MC OP1 -2.277 -3.310 -0.543 ETKDGv3 2
5MC OP2 -4.527 -2.033 -0.169 ETKDGv3 3
5MC OP3 -2.863 -2.717 1.932 ETKDGv3 4
5MC "O5'" -2.053 -0.783 0.104 ETKDGv3 5
5MC "C5'" -2.662 0.210 0.897 ETKDGv3 6
5MC "C4'" -1.881 1.524 0.772 ETKDGv3 7
5MC "O4'" -0.562 1.332 1.247 ETKDGv3 8
5MC "C3'" -1.844 2.039 -0.678 ETKDGv3 9
5MC "O3'" -2.154 3.410 -0.714 ETKDGv3 10
5MC "C2'" -0.406 1.800 -1.075 ETKDGv3 11
5MC "O2'" 0.087 2.742 -1.999 ETKDGv3 12
5MC "C1'" 0.322 1.822 0.264 ETKDGv3 13
5MC N1 1.542 1.000 0.208 ETKDGv3 14
5MC C2 2.807 1.575 -0.161 ETKDGv3 15
5MC O2 2.919 2.810 -0.382 ETKDGv3 16
5MC N3 3.952 0.730 -0.279 ETKDGv3 17
5MC C4 3.879 -0.555 -0.088 ETKDGv3 18
5MC N4 5.070 -1.337 -0.221 ETKDGv3 19
5MC C5 2.575 -1.193 0.258 ETKDGv3 20
5MC C6 1.478 -0.427 0.389 ETKDGv3 21
5MC CM5 2.479 -2.682 0.454 ETKDGv3 22
5MC HOP2 -4.473 -1.680 -1.093 ETKDGv3 23
5MC HOP3 -3.450 -3.513 1.980 ETKDGv3 24
5MC "H5'" -3.711 0.391 0.569 ETKDGv3 25
5MC "H5''" -2.662 -0.085 1.971 ETKDGv3 26
5MC "H4'" -2.380 2.273 1.428 ETKDGv3 27
5MC "H3'" -2.526 1.478 -1.360 ETKDGv3 28
5MC "HO3'" -3.141 3.477 -0.633 ETKDGv3 29
5MC "H2'" -0.327 0.786 -1.527 ETKDGv3 30
5MC "HO2'" 0.168 3.621 -1.545 ETKDGv3 31
5MC "H1'" 0.583 2.865 0.551 ETKDGv3 32
5MC HN41 5.073 -2.370 -0.076 ETKDGv3 33
5MC HN42 5.974 -0.875 -0.468 ETKDGv3 34
5MC H6 0.530 -0.889 0.634 ETKDGv3 35
5MC HM51 1.443 -3.008 0.688 ETKDGv3 36
5MC HM52 3.134 -2.989 1.296 ETKDGv3 37
5MC HM53 2.800 -3.201 -0.473 ETKDGv3 38
#