data_5MU
#
_chem_comp.id 5MU
_chem_comp.name "5-METHYLURIDINE 5'-MONOPHOSPHATE"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C10 H15 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id U
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces RT
_chem_comp.formula_weight 338.208
_chem_comp.one_letter_code U
_chem_comp.three_letter_code 5MU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EVV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5MU N1 N1 N 0 1 N N N N N N 45.954 22.791 42.672 -0.120 -0.274 2.226 N1 5MU 1
5MU C2 C2 C 0 1 N N N N N N 46.476 21.767 41.934 0.512 0.912 2.245 C2 5MU 2
5MU N3 N3 N 0 1 N N N N N N 46.007 21.674 40.638 1.295 1.261 3.282 N3 5MU 3
5MU C4 C4 C 0 1 N N N N N N 45.077 22.496 40.022 1.453 0.424 4.327 C4 5MU 4
5MU C5 C5 C 0 1 N N N N N N 44.584 23.568 40.864 0.796 -0.829 4.317 C5 5MU 5
5MU C5M C5M C 0 1 N N N N N N 43.612 24.547 40.279 0.959 -1.786 5.470 C5M 5MU 6
5MU C6 C6 C 0 1 N N N N N N 45.025 23.663 42.134 0.016 -1.155 3.264 C6 5MU 7
5MU O2 O2 O 0 1 N N N N N N 47.298 20.988 42.401 0.375 1.679 1.312 O2 5MU 8
5MU O4 O4 O 0 1 N N N N N N 44.773 22.294 38.828 2.161 0.739 5.266 O4 5MU 9
5MU "C1'" C1* C 0 1 N N R N N N 46.453 22.914 44.055 -0.966 -0.627 1.083 "C1'" 5MU 10
5MU "C2'" C2* C 0 1 N N R N N N 47.745 23.746 44.155 -2.088 0.419 0.900 "C2'" 5MU 11
5MU "O2'" O2* O 0 1 N N N N N N 48.556 23.304 45.227 -3.310 -0.040 1.482 "O2'" 5MU 12
5MU "C3'" C3* C 0 1 N N S N N N 47.172 25.138 44.395 -2.233 0.547 -0.633 "C3'" 5MU 13
5MU "C4'" C4* C 0 1 N N R N N N 46.050 24.822 45.369 -1.184 -0.438 -1.194 "C4'" 5MU 14
5MU "O3'" O3* O 0 1 N N N N N N 48.117 26.058 44.947 -3.547 0.169 -1.046 "O3'" 5MU 15
5MU "O4'" O4* O 0 1 N N N N N N 45.475 23.600 44.816 -0.204 -0.572 -0.142 "O4'" 5MU 16
5MU "C5'" C5* C 0 1 N N N N N N 44.957 25.856 45.452 -0.536 0.131 -2.457 "C5'" 5MU 17
5MU "O5'" O5* O 0 1 N N N N N N 44.384 26.043 44.182 0.479 -0.763 -2.916 "O5'" 5MU 18
5MU P P P 0 1 N N N N N N 43.417 27.268 43.896 1.115 -0.104 -4.240 P 5MU 19
5MU OP1 O1P O 0 1 N N N N N N 43.450 27.563 42.437 1.692 1.217 -3.906 OP1 5MU 20
5MU OP2 O2P O 0 1 N N N N N N 43.749 28.332 44.877 2.273 -1.065 -4.814 OP2 5MU 21
5MU OP3 O3P O 0 1 N Y N N N N 41.922 26.780 44.356 -0.032 0.077 -5.354 OP3 5MU 22
5MU HN3 HN3 H 0 1 N N N N N N 46.389 20.915 40.074 1.745 2.121 3.280 HN3 5MU 23
5MU H71 1H5M H 0 1 N N N N N N 43.232 25.371 40.926 1.622 -1.346 6.216 H71 5MU 24
5MU H72 2H5M H 0 1 N N N N N N 44.052 24.986 39.353 -0.013 -1.983 5.920 H72 5MU 25
5MU H73 3H5M H 0 1 N N N N N N 42.743 23.988 39.858 1.389 -2.720 5.109 H73 5MU 26
5MU H6 H6 H 0 1 N N N N N N 44.613 24.478 42.751 -0.495 -2.105 3.241 H6 5MU 27
5MU "H1'" H1* H 0 1 N N N N N N 46.661 21.882 44.422 -1.393 -1.621 1.220 "H1'" 5MU 28
5MU "H2'" H2* H 0 1 N N N N N N 48.415 23.682 43.266 -1.793 1.372 1.338 "H2'" 5MU 29
5MU "HO2'" *HO2 H 0 0 N N N N N N 49.353 23.817 45.288 -3.982 0.625 1.282 "HO2'" 5MU 30
5MU "H3'" H3* H 0 1 N N N N N N 46.851 25.652 43.459 -2.011 1.565 -0.955 "H3'" 5MU 31
5MU "H4'" H4* H 0 1 N N N N N N 46.458 24.761 46.404 -1.646 -1.402 -1.407 "H4'" 5MU 32
5MU "HO3'" *HO3 H 0 0 N Y N N N N 47.759 26.925 45.096 -4.157 0.818 -0.668 "HO3'" 5MU 33
5MU "H5'" 1H5* H 0 1 N N N N N N 44.193 25.599 46.223 -1.293 0.250 -3.232 "H5'" 5MU 34
5MU "H5''" 2H5* H 0 0 N N N N N N 45.317 26.813 45.895 -0.091 1.100 -2.232 "H5''" 5MU 35
5MU HOP2 2HOP H 0 0 N N N N N N 43.170 29.065 44.705 2.627 -0.634 -5.604 HOP2 5MU 36
5MU HOP3 3HOP H 0 0 N N N N N N 41.343 27.513 44.184 -0.380 -0.804 -5.543 HOP3 5MU 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5MU N1 C2 SING N N 1
5MU N1 C6 SING N N 2
5MU N1 "C1'" SING N N 3
5MU C2 N3 SING N N 4
5MU C2 O2 DOUB N N 5
5MU N3 C4 SING N N 6
5MU N3 HN3 SING N N 7
5MU C4 C5 SING N N 8
5MU C4 O4 DOUB N N 9
5MU C5 C5M SING N N 10
5MU C5 C6 DOUB N N 11
5MU C5M H71 SING N N 12
5MU C5M H72 SING N N 13
5MU C5M H73 SING N N 14
5MU C6 H6 SING N N 15
5MU "C1'" "C2'" SING N N 16
5MU "C1'" "O4'" SING N N 17
5MU "C1'" "H1'" SING N N 18
5MU "C2'" "O2'" SING N N 19
5MU "C2'" "C3'" SING N N 20
5MU "C2'" "H2'" SING N N 21
5MU "O2'" "HO2'" SING N N 22
5MU "C3'" "C4'" SING N N 23
5MU "C3'" "O3'" SING N N 24
5MU "C3'" "H3'" SING N N 25
5MU "C4'" "O4'" SING N N 26
5MU "C4'" "C5'" SING N N 27
5MU "C4'" "H4'" SING N N 28
5MU "O3'" "HO3'" SING N N 29
5MU "C5'" "O5'" SING N N 30
5MU "C5'" "H5'" SING N N 31
5MU "C5'" "H5''" SING N N 32
5MU "O5'" P SING N N 33
5MU P OP1 DOUB N N 34
5MU P OP2 SING N N 35
5MU P OP3 SING N N 36
5MU OP2 HOP2 SING N N 37
5MU OP3 HOP3 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5MU SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1C)C2OC(C(O)C2O)COP(=O)(O)O
5MU SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O
5MU SMILES CACTVS 3.341 CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O
5MU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
5MU SMILES "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O
5MU InChI InChI 1.03 InChI=1S/C10H15N2O9P/c1-4-2-12(10(16)11-8(4)15)9-7(14)6(13)5(21-9)3-20-22(17,18)19/h2,5-7,9,13-14H,3H2,1H3,(H,11,15,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1
5MU InChIKey InChI 1.03 IGWHDMPTQKSDTL-JXOAFFINSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5MU "SYSTEMATIC NAME" ACDLabs 10.04 "5-methyluridine 5'-(dihydrogen phosphate)"
5MU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5MU 'Create component' 1999-07-08 RCSB
5MU 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 5MU
_pdbe_chem_comp_drugbank_details.drugbank_id DB04243
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name TMP
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
5MU "5-methyl-5'-uridylic acid" DrugBank ?
5MU "5-methyluridine 5'-monophosphate" DrugBank ?
5MU "5-methyluridine 5'-phosphate" DrugBank ?
5MU ribo-TMP DrugBank ?
5MU "ribosylthymidine 5'-monophosphate" DrugBank ?
5MU "ribosylthymidine 5'-phosphate" DrugBank ?
5MU "ribosylthymine 5'-monophosphate" DrugBank ?
5MU "ribosylthymine 5'-phosphate" DrugBank ?
5MU "ribothymidine 5'-phosphate" DrugBank ?
5MU rTMP DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 5MU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04243
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine ribonucleoside monophosphates. These are pyrimidine ribobucleotides with monophosphate group  linked to the ribose moiety.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 5MU
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04243
_pdbe_chem_comp_drugbank_targets.name 'Single-stranded DNA-binding protein'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P0AGE0
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5MU N1 N 6.331 1.396 1
5MU C2 C 7.630 2.146 2
5MU N3 N 7.630 3.646 3
5MU C4 C 6.331 4.396 4
5MU C5 C 5.032 3.646 5
5MU C5M C 3.733 4.396 6
5MU C6 C 5.032 2.146 7
5MU O2 O 8.929 1.396 8
5MU O4 O 6.331 5.896 9
5MU "C1'" C 6.331 -0.104 10
5MU "C2'" C 5.118 -0.986 11
5MU "O2'" O 3.691 -0.522 12
5MU "C3'" C 5.581 -2.412 13
5MU "C4'" C 7.081 -2.412 14
5MU "O3'" O 4.699 -3.626 15
5MU "O4'" O 7.545 -0.986 16
5MU "C5'" C 7.963 -3.626 17
5MU "O5'" O 9.455 -3.469 18
5MU P P 10.336 -4.683 19
5MU OP1 O 11.218 -5.896 20
5MU OP2 O 11.550 -3.801 21
5MU OP3 O 9.123 -5.564 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5MU N1 C2 SINGLE NONE 1
5MU N1 C6 SINGLE NONE 2
5MU "C1'" N1 SINGLE BEGINDASH 3
5MU C2 N3 SINGLE NONE 4
5MU C2 O2 DOUBLE NONE 5
5MU N3 C4 SINGLE NONE 6
5MU C4 C5 SINGLE NONE 7
5MU C4 O4 DOUBLE NONE 8
5MU C5 C5M SINGLE NONE 9
5MU C5 C6 DOUBLE NONE 10
5MU "C1'" "C2'" SINGLE NONE 11
5MU "C1'" "O4'" SINGLE NONE 12
5MU "C2'" "O2'" SINGLE BEGINWEDGE 13
5MU "C2'" "C3'" SINGLE NONE 14
5MU "C3'" "C4'" SINGLE NONE 15
5MU "C3'" "O3'" SINGLE BEGINWEDGE 16
5MU "C4'" "O4'" SINGLE NONE 17
5MU "C4'" "C5'" SINGLE BEGINDASH 18
5MU "C5'" "O5'" SINGLE NONE 19
5MU "O5'" P SINGLE NONE 20
5MU P OP1 DOUBLE NONE 21
5MU P OP2 SINGLE NONE 22
5MU P OP3 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5MU MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
5MU phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
5MU pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
5MU ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5MU N1 S1 1
5MU C2 S1 1
5MU N3 S1 1
5MU C4 S1 1
5MU C5 S1 1
5MU C6 S1 1
5MU O2 S1 1
5MU O4 S1 1
5MU "C1'" S1 1
5MU "C2'" S1 1
5MU "C3'" S1 1
5MU "C4'" S1 1
5MU "O4'" S1 1
5MU "O5'" F1 1
5MU P F1 1
5MU OP1 F1 1
5MU OP2 F1 1
5MU OP3 F1 1
5MU C5 F2 1
5MU C4 F2 1
5MU N3 F2 1
5MU C2 F2 1
5MU N1 F2 1
5MU C6 F2 1
5MU "C2'" F3 1
5MU "C3'" F3 1
5MU "C4'" F3 1
5MU "O4'" F3 1
5MU "C1'" F3 1
5MU "C5'" F3 1
5MU "O5'" F3 1
5MU "O3'" F3 1
5MU "O2'" F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5MU
_pdbe_chem_comp_rdkit_properties.exactmw 338.052
_pdbe_chem_comp_rdkit_properties.amw 338.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 144.020
_pdbe_chem_comp_rdkit_properties.tpsa 171.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.681
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.929
_pdbe_chem_comp_rdkit_properties.chi0v 10.910
_pdbe_chem_comp_rdkit_properties.chi1v 6.488
_pdbe_chem_comp_rdkit_properties.chi2v 2.400
_pdbe_chem_comp_rdkit_properties.chi3v 2.400
_pdbe_chem_comp_rdkit_properties.chi4v 1.434
_pdbe_chem_comp_rdkit_properties.chi0n 25.016
_pdbe_chem_comp_rdkit_properties.chi1n 12.107
_pdbe_chem_comp_rdkit_properties.chi2n 2.085
_pdbe_chem_comp_rdkit_properties.chi3n 2.085
_pdbe_chem_comp_rdkit_properties.chi4n 1.239
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.330
_pdbe_chem_comp_rdkit_properties.kappa1 5.947
_pdbe_chem_comp_rdkit_properties.kappa2 6.048
_pdbe_chem_comp_rdkit_properties.kappa3 3.524
_pdbe_chem_comp_rdkit_properties.Phi 1.635
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5MU UniChem ChEMBL CHEMBL1230421
5MU UniChem DrugBank DB04243
5MU UniChem PDBe 5MU
5MU UniChem ChEBI 45394
5MU UniChem SureChEMBL SCHEMBL2883629
5MU UniChem 'PubChem TPHARMA' 163462457
5MU UniChem PubChem 12803287
5MU UniChem 'EPA CompTox Dashboard' DTXSID50510240
5MU UniChem BRENDA 101428
5MU UniChem 'Probes And Drugs' PD059430
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5MU N1 -1.677 1.159 -0.284 ETKDGv3 1
5MU C2 -2.811 2.042 -0.391 ETKDGv3 2
5MU N3 -2.718 3.371 0.121 ETKDGv3 3
5MU C4 -1.488 3.822 0.689 ETKDGv3 4
5MU C5 -0.316 2.923 0.707 ETKDGv3 5
5MU C5M 0.985 3.392 1.299 ETKDGv3 6
5MU C6 -0.435 1.664 0.253 ETKDGv3 7
5MU O2 -3.882 1.657 -0.932 ETKDGv3 8
5MU O4 -1.411 4.986 1.166 ETKDGv3 9
5MU "C1'" -1.739 -0.208 -0.832 ETKDGv3 10
5MU "C2'" -1.181 -0.239 -2.263 ETKDGv3 11
5MU "O2'" -2.081 -0.865 -3.150 ETKDGv3 12
5MU "C3'" 0.113 -1.008 -2.118 ETKDGv3 13
5MU "C4'" -0.126 -1.821 -0.851 ETKDGv3 14
5MU "O3'" 0.356 -1.833 -3.229 ETKDGv3 15
5MU "O4'" -0.995 -1.091 -0.015 ETKDGv3 16
5MU "C5'" 1.178 -2.122 -0.107 ETKDGv3 17
5MU "O5'" 0.889 -2.884 1.041 ETKDGv3 18
5MU P 2.343 -3.141 1.892 ETKDGv3 19
5MU OP1 2.057 -3.999 3.104 ETKDGv3 20
5MU OP2 2.988 -1.661 2.400 ETKDGv3 21
5MU OP3 3.463 -3.937 0.903 ETKDGv3 22
5MU HN3 -3.543 4.011 0.077 ETKDGv3 23
5MU H71 1.844 2.805 0.907 ETKDGv3 24
5MU H72 1.162 4.458 1.046 ETKDGv3 25
5MU H73 0.948 3.283 2.403 ETKDGv3 26
5MU H6 0.428 1.010 0.291 ETKDGv3 27
5MU "H1'" -2.793 -0.563 -0.824 ETKDGv3 28
5MU "H2'" -0.973 0.785 -2.645 ETKDGv3 29
5MU "HO2'" -2.267 -1.779 -2.808 ETKDGv3 30
5MU "H3'" 0.948 -0.281 -1.979 ETKDGv3 31
5MU "H4'" -0.618 -2.786 -1.111 ETKDGv3 32
5MU "HO3'" 1.301 -2.128 -3.160 ETKDGv3 33
5MU "H5'" 1.660 -1.156 0.170 ETKDGv3 34
5MU "H5''" 1.850 -2.690 -0.789 ETKDGv3 35
5MU HOP2 2.245 -1.212 2.878 ETKDGv3 36
5MU HOP3 4.297 -3.963 1.435 ETKDGv3 37
#