data_5NN
#
_chem_comp.id 5NN
_chem_comp.name 5-AMINO-3-PHENYL-1,2-DIHYDROISOQUINOLIN-1-ONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H12 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-08-08
_chem_comp.pdbx_modified_date 2015-07-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 236.269
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5NN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UVZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5NN CAN CAN C 0 1 Y N N N N N -9.692 -43.129 19.546 -3.099 -1.048 -0.001 CAN 5NN 1
5NN CAR CAR C 0 1 Y N N N N N -9.291 -43.116 20.879 -4.453 -0.784 -0.000 CAR 5NN 2
5NN CAQ CAQ C 0 1 Y N N N N N -8.110 -42.541 21.277 -4.906 0.524 0.000 CAQ 5NN 3
5NN CAP CAP C 0 1 Y N N N N N -7.299 -42.002 20.309 -4.006 1.574 -0.000 CAP 5NN 4
5NN CAO CAO C 0 1 Y N N N N N -7.682 -42.011 18.981 -2.649 1.324 -0.001 CAO 5NN 5
5NN CAL CAL C 0 1 Y N N N N N -8.920 -42.512 18.571 -2.185 0.008 -0.001 CAL 5NN 6
5NN CAI CAI C 0 1 N N N N N N -9.203 -42.576 17.198 -0.733 -0.268 -0.001 CAI 5NN 7
5NN CAH CAH C 0 1 N N N N N N -10.113 -43.494 16.650 0.132 0.776 -0.001 CAH 5NN 8
5NN CAE CAE C 0 1 Y N N N N N -10.296 -43.610 15.252 1.528 0.539 -0.001 CAE 5NN 9
5NN CAD CAD C 0 1 Y N N N N N -11.205 -44.529 14.702 2.454 1.596 0.000 CAD 5NN 10
5NN NAM NAM N 0 1 N N N N N N -12.015 -45.258 15.499 2.012 2.918 0.001 NAM 5NN 11
5NN CAC CAC C 0 1 Y N N N N N -11.326 -44.631 13.318 3.808 1.314 0.000 CAC 5NN 12
5NN CAB CAB C 0 1 Y N N N N N -10.508 -43.872 12.471 4.258 0.000 0.000 CAB 5NN 13
5NN CAA CAA C 0 1 Y N N N N N -9.601 -42.960 13.019 3.367 -1.050 -0.001 CAA 5NN 14
5NN CAF CAF C 0 1 Y N N N N N -9.496 -42.845 14.393 1.995 -0.795 -0.001 CAF 5NN 15
5NN CAG CAG C 0 1 N N N N N N -8.587 -41.903 14.948 1.010 -1.883 -0.001 CAG 5NN 16
5NN OAK OAK O 0 1 N N N N N N -7.923 -41.125 14.233 1.372 -3.046 -0.001 OAK 5NN 17
5NN NAJ NAJ N 0 1 N N N N N N -8.442 -41.788 16.307 -0.303 -1.574 0.005 NAJ 5NN 18
5NN HAN HAN H 0 1 N N N N N N -10.611 -43.623 19.268 -2.747 -2.069 0.003 HAN 5NN 19
5NN HAR HAR H 0 1 N N N N N N -9.928 -43.572 21.622 -5.161 -1.599 -0.001 HAR 5NN 20
5NN HAQ HAQ H 0 1 N N N N N N -7.827 -42.513 22.319 -5.967 0.725 0.001 HAQ 5NN 21
5NN HAP HAP H 0 1 N N N N N N -6.351 -41.566 20.588 -4.366 2.593 0.000 HAP 5NN 22
5NN HAO HAO H 0 1 N N N N N N -7.004 -41.619 18.238 -1.947 2.145 -0.002 HAO 5NN 23
5NN HAH HAH H 0 1 N N N N N N -10.687 -44.126 17.311 -0.243 1.788 -0.001 HAH 5NN 24
5NN HAJ HAJ H 0 1 N N N N N N -7.783 -41.132 16.675 -0.959 -2.289 0.009 HAJ 5NN 25
5NN HAM1 HAM1 H 0 0 N N N N N N -12.589 -45.853 14.937 1.061 3.112 0.001 HAM1 5NN 26
5NN HAM2 HAM2 H 0 0 N N N N N N -11.461 -45.816 16.116 2.655 3.645 0.001 HAM2 5NN 27
5NN HAC HAC H 0 1 N N N N N N -12.058 -45.302 12.894 4.523 2.123 0.001 HAC 5NN 28
5NN HAB HAB H 0 1 N N N N N N -10.578 -43.991 11.400 5.319 -0.200 0.001 HAB 5NN 29
5NN HAA HAA H 0 1 N N N N N N -8.987 -42.350 12.374 3.729 -2.068 -0.002 HAA 5NN 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5NN CAN CAR SING Y N 1
5NN CAN CAL DOUB Y N 2
5NN CAR CAQ DOUB Y N 3
5NN CAQ CAP SING Y N 4
5NN CAP CAO DOUB Y N 5
5NN CAO CAL SING Y N 6
5NN CAL CAI SING N N 7
5NN CAI CAH DOUB N N 8
5NN CAI NAJ SING N N 9
5NN CAH CAE SING N N 10
5NN CAE CAD SING Y N 11
5NN CAE CAF DOUB Y N 12
5NN CAD NAM SING N N 13
5NN CAD CAC DOUB Y N 14
5NN CAC CAB SING Y N 15
5NN CAB CAA DOUB Y N 16
5NN CAA CAF SING Y N 17
5NN CAF CAG SING N N 18
5NN CAG OAK DOUB N N 19
5NN CAG NAJ SING N N 20
5NN CAN HAN SING N N 21
5NN CAR HAR SING N N 22
5NN CAQ HAQ SING N N 23
5NN CAP HAP SING N N 24
5NN CAO HAO SING N N 25
5NN CAH HAH SING N N 26
5NN NAJ HAJ SING N N 27
5NN NAM HAM1 SING N N 28
5NN NAM HAM2 SING N N 29
5NN CAC HAC SING N N 30
5NN CAB HAB SING N N 31
5NN CAA HAA SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5NN SMILES ACDLabs 12.01 O=C2c3cccc(c3C=C(c1ccccc1)N2)N
5NN InChI InChI 1.03 InChI=1S/C15H12N2O/c16-13-8-4-7-11-12(13)9-14(17-15(11)18)10-5-2-1-3-6-10/h1-9H,16H2,(H,17,18)
5NN InChIKey InChI 1.03 RGSDXZQBZQATQJ-UHFFFAOYSA-N
5NN SMILES_CANONICAL CACTVS 3.385 Nc1cccc2C(=O)NC(=Cc12)c3ccccc3
5NN SMILES CACTVS 3.385 Nc1cccc2C(=O)NC(=Cc12)c3ccccc3
5NN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C2=Cc3c(cccc3N)C(=O)N2
5NN SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C2=Cc3c(cccc3N)C(=O)N2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5NN "SYSTEMATIC NAME" ACDLabs 12.01 5-amino-3-phenylisoquinolin-1(2H)-one
5NN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 5-azanyl-3-phenyl-2H-isoquinolin-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5NN 'Create component' 2014-08-08 EBI
5NN 'Initial release' 2015-07-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5NN CAN C 10.896 0.375 1
5NN CAR C 12.195 1.125 2
5NN CAQ C 12.195 2.625 3
5NN CAP C 10.896 3.375 4
5NN CAO C 9.597 2.625 5
5NN CAL C 9.597 1.125 6
5NN CAI C 8.298 0.375 7
5NN CAH C 6.999 1.125 8
5NN CAE C 5.700 0.375 9
5NN CAD C 4.359 1.177 10
5NN NAM N 4.376 2.677 11
5NN CAC C 3.000 0.406 12
5NN CAB C 3.000 -1.156 13
5NN CAA C 4.359 -1.927 14
5NN CAF C 5.700 -1.125 15
5NN CAG C 6.999 -1.875 16
5NN OAK O 6.999 -3.375 17
5NN NAJ N 8.298 -1.125 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5NN CAN CAR DOUBLE NONE 1
5NN CAN CAL SINGLE NONE 2
5NN CAR CAQ SINGLE NONE 3
5NN CAQ CAP DOUBLE NONE 4
5NN CAP CAO SINGLE NONE 5
5NN CAO CAL DOUBLE NONE 6
5NN CAL CAI SINGLE NONE 7
5NN CAI CAH DOUBLE NONE 8
5NN CAI NAJ SINGLE NONE 9
5NN CAH CAE SINGLE NONE 10
5NN CAE CAD DOUBLE NONE 11
5NN CAE CAF SINGLE NONE 12
5NN CAD NAM SINGLE NONE 13
5NN CAD CAC SINGLE NONE 14
5NN CAC CAB DOUBLE NONE 15
5NN CAB CAA SINGLE NONE 16
5NN CAA CAF DOUBLE NONE 17
5NN CAF CAG SINGLE NONE 18
5NN CAG OAK DOUBLE NONE 19
5NN CAG NAJ SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5NN MurckoScaffold S1 scaffold 'O=c1[nH]c(-c2ccccc2)cc2ccccc12' InChI=1S/C15H11NO/c17-15-13-9-5-4-8-12(13)10-14(16-15)11-6-2-1-3-7-11/h1-10H,(H,16,17) VZYRBVZOGGKAKY-UHFFFAOYSA-N
5NN isoquinoline F1 fragment c1ccc2cnccc2c1 InChI=1S/C9H7N/c1-2-4-9-7-10-6-5-8(9)3-1/h1-7H AWJUIBRHMBBTKR-UHFFFAOYSA-N
5NN phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5NN pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5NN CAN S1 1
5NN CAR S1 1
5NN CAQ S1 1
5NN CAP S1 1
5NN CAO S1 1
5NN CAL S1 1
5NN CAI S1 1
5NN CAH S1 1
5NN CAE S1 1
5NN CAD S1 1
5NN CAC S1 1
5NN CAB S1 1
5NN CAA S1 1
5NN CAF S1 1
5NN CAG S1 1
5NN OAK S1 1
5NN NAJ S1 1
5NN CAC F1 1
5NN CAD F1 1
5NN CAE F1 1
5NN CAF F1 1
5NN CAA F1 1
5NN CAB F1 1
5NN CAG F1 1
5NN NAJ F1 1
5NN CAI F1 1
5NN CAH F1 1
5NN CAN F2 1
5NN CAR F2 1
5NN CAQ F2 1
5NN CAP F2 1
5NN CAO F2 1
5NN CAL F2 1
5NN CAE F2 2
5NN CAD F2 2
5NN CAC F2 2
5NN CAB F2 2
5NN CAA F2 2
5NN CAF F2 2
5NN CAI F3 1
5NN CAH F3 1
5NN CAE F3 1
5NN CAF F3 1
5NN CAG F3 1
5NN NAJ F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5NN
_pdbe_chem_comp_rdkit_properties.exactmw 236.095
_pdbe_chem_comp_rdkit_properties.amw 236.274
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.925
_pdbe_chem_comp_rdkit_properties.tpsa 58.880
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.488
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.173
_pdbe_chem_comp_rdkit_properties.chi0v 8.803
_pdbe_chem_comp_rdkit_properties.chi1v 4.875
_pdbe_chem_comp_rdkit_properties.chi2v 2.263
_pdbe_chem_comp_rdkit_properties.chi3v 2.263
_pdbe_chem_comp_rdkit_properties.chi4v 1.469
_pdbe_chem_comp_rdkit_properties.chi0n 20.803
_pdbe_chem_comp_rdkit_properties.chi1n 10.717
_pdbe_chem_comp_rdkit_properties.chi2n 2.263
_pdbe_chem_comp_rdkit_properties.chi3n 2.263
_pdbe_chem_comp_rdkit_properties.chi4n 1.469
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.550
_pdbe_chem_comp_rdkit_properties.kappa1 3.720
_pdbe_chem_comp_rdkit_properties.kappa2 4.036
_pdbe_chem_comp_rdkit_properties.kappa3 1.659
_pdbe_chem_comp_rdkit_properties.Phi 0.834
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5NN UniChem ChEMBL CHEMBL2414043
5NN UniChem PDBe 5NN
5NN UniChem ZINC ZINC000096282484
5NN UniChem SureChEMBL SCHEMBL15775666
5NN UniChem PubChem 71769164
5NN UniChem BindingDb 50438604
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5NN CAN 2.977 -0.994 -0.866 ETKDGv3 1
5NN CAR 4.288 -0.732 -0.944 ETKDGv3 2
5NN CAQ 4.859 0.414 -0.211 ETKDGv3 3
5NN CAP 4.067 1.194 0.533 ETKDGv3 4
5NN CAO 2.620 0.909 0.624 ETKDGv3 5
5NN CAL 2.086 -0.134 -0.044 ETKDGv3 6
5NN CAI 0.637 -0.451 0.046 ETKDGv3 7
5NN CAH -0.283 0.533 -0.002 ETKDGv3 8
5NN CAE -1.743 0.254 0.070 ETKDGv3 9
5NN CAD -2.683 1.238 0.073 ETKDGv3 10
5NN NAM -2.345 2.632 0.109 ETKDGv3 11
5NN CAC -4.120 0.873 0.056 ETKDGv3 12
5NN CAB -4.500 -0.407 0.068 ETKDGv3 13
5NN CAA -3.491 -1.477 0.103 ETKDGv3 14
5NN CAF -2.182 -1.169 0.106 ETKDGv3 15
5NN CAG -1.145 -2.213 0.156 ETKDGv3 16
5NN OAK -1.452 -3.435 0.211 ETKDGv3 17
5NN NAJ 0.232 -1.829 0.148 ETKDGv3 18
5NN HAN 2.569 -1.829 -1.421 ETKDGv3 19
5NN HAR 4.931 -1.358 -1.549 ETKDGv3 20
5NN HAQ 5.920 0.622 -0.277 ETKDGv3 21
5NN HAP 4.485 2.034 1.073 ETKDGv3 22
5NN HAO 2.006 1.541 1.254 ETKDGv3 23
5NN HAH 0.064 1.545 -0.151 ETKDGv3 24
5NN HAJ 0.957 -2.576 0.234 ETKDGv3 25
5NN HAM1 -3.091 3.350 -0.029 ETKDGv3 26
5NN HAM2 -1.410 2.984 0.404 ETKDGv3 27
5NN HAC -4.874 1.650 0.039 ETKDGv3 28
5NN HAB -5.553 -0.661 0.059 ETKDGv3 29
5NN HAA -3.825 -2.506 0.128 ETKDGv3 30
#