data_5NS
#
_chem_comp.id 5NS
_chem_comp.name "5-aminonaphthalene-1-sulfonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H9 N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-03-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 223.248
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5NS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CFT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5NS C1 C1 C 0 1 Y N N N N N -20.160 1.477 -8.275 0.645 1.958 -0.024 C1 5NS 1
5NS C2 C2 C 0 1 Y N N N N N -19.776 1.870 -6.994 -0.587 2.608 0.005 C2 5NS 2
5NS C3 C3 C 0 1 Y N N N N N -20.334 1.225 -5.894 -1.751 1.902 0.020 C3 5NS 3
5NS C4 C4 C 0 1 Y N N N N N -21.265 0.193 -6.062 -1.714 0.499 0.007 C4 5NS 4
5NS C5 C5 C 0 1 Y N N N N N -21.658 -0.205 -7.348 -0.462 -0.163 -0.023 C5 5NS 5
5NS C6 C6 C 0 1 Y N N N N N -21.094 0.447 -8.461 0.720 0.599 -0.044 C6 5NS 6
5NS C9 C9 C 0 1 Y N N N N N -23.132 -1.867 -6.357 -1.582 -2.281 -0.023 C9 5NS 7
5NS C10 C10 C 0 1 Y N N N N N -22.601 -1.248 -7.491 -0.422 -1.567 -0.038 C10 5NS 8
5NS O14 O14 O 0 1 N N N N N N -23.003 0.111 -10.034 2.625 -0.601 1.349 O14 5NS 9
5NS S11 S11 S 0 1 N N N N N N -21.532 0.016 -9.933 2.289 -0.201 -0.081 S11 5NS 10
5NS O12 O12 O 0 1 N N N N N N -21.070 -1.367 -10.176 2.105 -1.411 -0.803 O12 5NS 11
5NS O13 O13 O 0 1 N N N N N N -20.934 0.891 -10.967 3.236 0.790 -0.454 O13 5NS 12
5NS C8 C8 C 0 1 Y N N N N N -22.733 -1.461 -5.084 -2.818 -1.642 0.007 C8 5NS 13
5NS C7 C7 C 0 1 Y N N N N N -21.803 -0.434 -4.928 -2.900 -0.266 0.022 C7 5NS 14
5NS N15 N15 N 0 1 N N N N N N -21.443 -0.072 -3.665 -4.142 0.364 0.052 N15 5NS 15
5NS H1 H1 H 0 1 N N N N N N -19.733 1.972 -9.135 1.554 2.541 -0.036 H1 5NS 16
5NS H2 H2 H 0 1 N N N N N N -19.056 2.663 -6.857 -0.619 3.688 0.015 H2 5NS 17
5NS H3 H3 H 0 1 N N N N N N -20.045 1.525 -4.898 -2.699 2.419 0.044 H3 5NS 18
5NS H9 H9 H 0 1 N N N N N N -23.854 -2.663 -6.466 -1.542 -3.360 -0.034 H9 5NS 19
5NS H10 H10 H 0 1 N N N N N N -22.911 -1.566 -8.476 0.528 -2.081 -0.061 H10 5NS 20
5NS HO14 HO14 H 0 0 N N N N N N -23.380 0.131 -9.162 3.475 -1.052 1.441 HO14 5NS 21
5NS H8 H8 H 0 1 N N N N N N -23.147 -1.946 -4.212 -3.723 -2.231 0.018 H8 5NS 22
5NS HN15 HN15 H 0 0 N N N N N N -21.355 -0.889 -3.096 -4.195 1.333 0.062 HN15 5NS 23
5NS HN1A HN1A H 0 0 N N N N N N -20.567 0.410 -3.693 -4.954 -0.166 0.062 HN1A 5NS 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5NS C6 C1 DOUB Y N 1
5NS C1 C2 SING Y N 2
5NS C1 H1 SING N N 3
5NS C2 C3 DOUB Y N 4
5NS C2 H2 SING N N 5
5NS C4 C3 SING Y N 6
5NS C3 H3 SING N N 7
5NS C5 C4 SING Y N 8
5NS C4 C7 DOUB Y N 9
5NS C6 C5 SING Y N 10
5NS C10 C5 DOUB Y N 11
5NS S11 C6 SING N N 12
5NS C10 C9 SING Y N 13
5NS C9 C8 DOUB Y N 14
5NS C9 H9 SING N N 15
5NS C10 H10 SING N N 16
5NS O14 S11 SING N N 17
5NS O14 HO14 SING N N 18
5NS O13 S11 DOUB N N 19
5NS O12 S11 DOUB N N 20
5NS C8 C7 SING Y N 21
5NS C8 H8 SING N N 22
5NS C7 N15 SING N N 23
5NS N15 HN15 SING N N 24
5NS N15 HN1A SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5NS SMILES ACDLabs 10.04 O=S(=O)(O)c1cccc2c1cccc2N
5NS SMILES_CANONICAL CACTVS 3.341 Nc1cccc2c1cccc2[S](O)(=O)=O
5NS SMILES CACTVS 3.341 Nc1cccc2c1cccc2[S](O)(=O)=O
5NS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc2c(cccc2S(=O)(=O)O)c(c1)N
5NS SMILES "OpenEye OEToolkits" 1.5.0 c1cc2c(cccc2S(=O)(=O)O)c(c1)N
5NS InChI InChI 1.03 InChI=1S/C10H9NO3S/c11-9-5-1-4-8-7(9)3-2-6-10(8)15(12,13)14/h1-6H,11H2,(H,12,13,14)
5NS InChIKey InChI 1.03 DQNAQOYOSRJXFZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5NS "SYSTEMATIC NAME" ACDLabs 10.04 "5-aminonaphthalene-1-sulfonic acid"
5NS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-aminonaphthalene-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5NS 'Create component' 2008-03-13 RCSB
5NS 'Modify aromatic_flag' 2011-06-04 RCSB
5NS 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 5NS
_pdbe_chem_comp_drugbank_details.drugbank_id DB07176
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '1-Naphthylamine-5-sulfonic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 84-89-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
5NS '1-Amino-5-naphthalenesufonic acid' DrugBank ?
5NS 1-Amino-5-sulfonaphthalene DrugBank ?
5NS '5-Naphthylamine-1-sulfonic acid' DrugBank ?
5NS 'Laurent acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 5NS
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07176
_pdbe_chem_comp_drugbank_classification.parent '1-naphthalene sulfonates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Naphthalenes
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 1-naphthalene sulfonates. These are organic aromatic compounds that contain a naphthalene moiety that carries a sulfonic acid group at the 1-position. Naphthalene is a bicyclic compound that is made up of two fused benzene ring.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5NS C1 C 3.201 -0.031 1
5NS C2 C 3.201 1.469 2
5NS C3 C 4.500 2.219 3
5NS C4 C 5.799 1.469 4
5NS C5 C 5.799 -0.031 5
5NS C6 C 4.500 -0.781 6
5NS C9 C 8.499 -0.062 7
5NS C10 C 7.140 -0.833 8
5NS O14 O 4.500 -3.781 9
5NS S11 S 4.500 -2.281 10
5NS O12 O 6.000 -2.281 11
5NS O13 O 3.000 -2.281 12
5NS C8 C 8.499 1.501 13
5NS C7 C 7.140 2.271 14
5NS N15 N 7.123 3.771 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5NS C6 C1 DOUBLE NONE 1
5NS C1 C2 SINGLE NONE 2
5NS C2 C3 DOUBLE NONE 3
5NS C4 C3 SINGLE NONE 4
5NS C5 C4 DOUBLE NONE 5
5NS C4 C7 SINGLE NONE 6
5NS C6 C5 SINGLE NONE 7
5NS C10 C5 SINGLE NONE 8
5NS S11 C6 SINGLE NONE 9
5NS C10 C9 DOUBLE NONE 10
5NS C9 C8 SINGLE NONE 11
5NS O14 S11 SINGLE NONE 12
5NS O13 S11 DOUBLE NONE 13
5NS O12 S11 DOUBLE NONE 14
5NS C8 C7 DOUBLE NONE 15
5NS C7 N15 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5NS MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
5NS napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
5NS phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5NS C1 S1 1
5NS C2 S1 1
5NS C3 S1 1
5NS C4 S1 1
5NS C5 S1 1
5NS C6 S1 1
5NS C9 S1 1
5NS C10 S1 1
5NS C8 S1 1
5NS C7 S1 1
5NS C1 F1 1
5NS C2 F1 1
5NS C3 F1 1
5NS C4 F1 1
5NS C5 F1 1
5NS C6 F1 1
5NS C10 F1 1
5NS C9 F1 1
5NS C8 F1 1
5NS C7 F1 1
5NS C1 F2 1
5NS C6 F2 1
5NS C5 F2 1
5NS C4 F2 1
5NS C3 F2 1
5NS C2 F2 1
5NS C4 F2 2
5NS C5 F2 2
5NS C10 F2 2
5NS C9 F2 2
5NS C8 F2 2
5NS C7 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 5NS
_pdbe_chem_comp_rdkit_properties.exactmw 223.030
_pdbe_chem_comp_rdkit_properties.amw 223.253
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 99.929
_pdbe_chem_comp_rdkit_properties.tpsa 80.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.752
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.715
_pdbe_chem_comp_rdkit_properties.chi0v 7.897
_pdbe_chem_comp_rdkit_properties.chi1v 5.086
_pdbe_chem_comp_rdkit_properties.chi2v 2.502
_pdbe_chem_comp_rdkit_properties.chi3v 2.502
_pdbe_chem_comp_rdkit_properties.chi4v 1.668
_pdbe_chem_comp_rdkit_properties.chi0n 16.080
_pdbe_chem_comp_rdkit_properties.chi1n 7.980
_pdbe_chem_comp_rdkit_properties.chi2n 1.696
_pdbe_chem_comp_rdkit_properties.chi3n 1.696
_pdbe_chem_comp_rdkit_properties.chi4n 1.089
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.590
_pdbe_chem_comp_rdkit_properties.kappa1 3.769
_pdbe_chem_comp_rdkit_properties.kappa2 3.217
_pdbe_chem_comp_rdkit_properties.kappa3 1.666
_pdbe_chem_comp_rdkit_properties.Phi 0.808
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5NS UniChem ChEMBL CHEMBL589370
5NS UniChem DrugBank DB07176
5NS UniChem PDBe 5NS
5NS UniChem ChEBI 183820
5NS UniChem ZINC ZINC000001683633
5NS UniChem eMolecules 529448
5NS UniChem fdasrs W70WC365OD
5NS UniChem SureChEMBL SCHEMBL147103
5NS UniChem BindingDb 50308731
5NS UniChem 'EPA CompTox Dashboard' DTXSID7058911
5NS UniChem ChemicalBook CB7713334
5NS UniChem 'Probes And Drugs' PD005657
5NS UniChem Nikkaji J4.904B
5NS UniChem 'PubChem TPHARMA' 16948637
5NS UniChem PubChem 6793
5NS UniChem Mcule MCULE-2813385047
5NS UniChem ACTor 84-89-9
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5NS C1 1.298 -1.830 0.902 ETKDGv3 1
5NS C2 -0.024 -2.470 0.844 ETKDGv3 2
5NS C3 -1.093 -1.777 0.447 ETKDGv3 3
5NS C4 -0.967 -0.347 0.054 ETKDGv3 4
5NS C5 0.254 0.253 0.133 ETKDGv3 5
5NS C6 1.449 -0.539 0.570 ETKDGv3 6
5NS C9 -0.692 2.398 -0.583 ETKDGv3 7
5NS C10 0.376 1.696 -0.205 ETKDGv3 8
5NS O14 3.473 0.822 -0.854 ETKDGv3 9
5NS S11 3.062 0.189 0.649 ETKDGv3 10
5NS O12 4.092 -0.834 1.039 ETKDGv3 11
5NS O13 3.061 1.287 1.675 ETKDGv3 12
5NS C8 -2.008 1.750 -0.687 ETKDGv3 13
5NS C7 -2.157 0.447 -0.401 ETKDGv3 14
5NS N15 -3.453 -0.148 -0.558 ETKDGv3 15
5NS H1 2.142 -2.426 1.223 ETKDGv3 16
5NS H2 -0.127 -3.508 1.132 ETKDGv3 17
5NS H3 -2.045 -2.285 0.439 ETKDGv3 18
5NS H9 -0.594 3.449 -0.822 ETKDGv3 19
5NS H10 1.326 2.206 -0.141 ETKDGv3 20
5NS HO14 3.375 0.064 -1.485 ETKDGv3 21
5NS H8 -2.853 2.341 -1.017 ETKDGv3 22
5NS HN15 -4.280 0.439 -0.810 ETKDGv3 23
5NS HN1A -3.614 -1.175 -0.497 ETKDGv3 24
#