data_5NY
#
_chem_comp.id 5NY
_chem_comp.name
2-chloranyl-~{N}-[(7~{S})-2-methyl-7-phenyl-10-(1~{H}-1,2,3,4-tetrazol-5-yl)-8,9-dihydro-6~{H}-pyrido[1,2-a]indol-7-yl]-4-(1,2,4-triazol-4-yl)benzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H24 Cl N9 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-10-28
_chem_comp.pdbx_modified_date 2015-11-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 550.014
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5NY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5EGM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5NY CL CL1 CL 0 0 N N N N N N -13.282 -39.090 -11.238 3.813 -1.677 -1.845 CL 5NY 1
5NY C25 C1 C 0 1 Y N N N N N -14.629 -40.185 -11.174 3.542 -0.452 -0.646 C25 5NY 2
5NY C24 C2 C 0 1 Y N N N N N -14.526 -41.287 -10.341 4.529 0.467 -0.361 C24 5NY 3
5NY C23 C3 C 0 1 Y N N N N N -15.570 -42.214 -10.301 4.312 1.448 0.599 C23 5NY 4
5NY N2 N1 N 0 1 Y N N N N N -15.458 -43.380 -9.478 5.316 2.379 0.885 N2 5NY 5
5NY C27 C4 C 0 1 Y N N N N N -14.861 -43.490 -8.262 5.262 3.396 1.792 C27 5NY 6
5NY N4 N2 N 0 1 Y N N N N N -15.005 -44.692 -7.781 6.406 4.021 1.740 N4 5NY 7
5NY N3 N3 N 0 1 Y N N N N N -15.712 -45.425 -8.726 7.169 3.467 0.867 N3 5NY 8
5NY C26 C5 C 0 1 Y N N N N N -15.958 -44.621 -9.722 6.554 2.455 0.318 C26 5NY 9
5NY C22 C6 C 0 1 Y N N N N N -16.695 -42.025 -11.086 3.099 1.507 1.276 C22 5NY 10
5NY C21 C7 C 0 1 Y N N N N N -16.790 -40.921 -11.909 2.107 0.593 0.998 C21 5NY 11
5NY C20 C8 C 0 1 Y N N N N N -15.756 -39.983 -11.977 2.318 -0.392 0.030 C20 5NY 12
5NY C19 C9 C 0 1 N N N N N N -15.908 -38.896 -12.986 1.258 -1.374 -0.271 C19 5NY 13
5NY O O1 O 0 1 N N N N N N -16.233 -39.161 -14.143 1.444 -2.230 -1.114 O 5NY 14
5NY N1 N4 N 0 1 N N N N N N -15.761 -37.631 -12.539 0.084 -1.321 0.389 N1 5NY 15
5NY C10 C10 C 0 1 N N S N N N -15.839 -36.436 -13.398 -1.009 -2.222 0.013 C10 5NY 16
5NY C9 C11 C 0 1 N N N N N N -15.404 -35.252 -12.470 -2.239 -1.917 0.872 C9 5NY 17
5NY N N5 N 0 1 Y N N N N N -14.000 -35.444 -12.034 -2.772 -0.599 0.495 N 5NY 18
5NY C4 C12 C 0 1 Y N N N N N -13.438 -34.987 -10.835 -3.631 0.170 1.228 C4 5NY 19
5NY C3 C13 C 0 1 Y N N N N N -14.037 -34.267 -9.806 -4.232 -0.032 2.469 C3 5NY 20
5NY C2 C14 C 0 1 Y N N N N N -13.251 -33.950 -8.705 -5.068 0.970 2.931 C2 5NY 21
5NY C13 C15 C 0 1 Y N N N N N -17.264 -36.217 -13.935 -0.581 -3.649 0.236 C13 5NY 22
5NY C18 C16 C 0 1 Y N N N N N -18.368 -36.797 -13.311 0.415 -3.938 1.150 C18 5NY 23
5NY C17 C17 C 0 1 Y N N N N N -19.654 -36.542 -13.761 0.807 -5.247 1.355 C17 5NY 24
5NY C16 C18 C 0 1 Y N N N N N -19.860 -35.705 -14.835 0.203 -6.269 0.646 C16 5NY 25
5NY C15 C19 C 0 1 Y N N N N N -18.779 -35.122 -15.467 -0.793 -5.980 -0.268 C15 5NY 26
5NY C14 C20 C 0 1 Y N N N N N -17.491 -35.376 -15.023 -1.190 -4.671 -0.468 C14 5NY 27
5NY C11 C21 C 0 1 N N N N N N -14.783 -36.515 -14.522 -1.353 -2.018 -1.465 C11 5NY 28
5NY C12 C22 C 0 1 N N N N N N -13.369 -36.844 -14.018 -1.537 -0.519 -1.734 C12 5NY 29
5NY C8 C23 C 0 1 Y N N N N N -13.055 -36.160 -12.716 -2.462 0.042 -0.678 C8 5NY 30
5NY C7 C24 C 0 1 Y N N N N N -11.858 -36.188 -11.992 -3.106 1.238 -0.739 C7 5NY 31
5NY C5 C25 C 0 1 Y N N N N N -12.124 -35.407 -10.785 -3.881 1.354 0.494 C5 5NY 32
5NY C6 C26 C 0 1 Y N N N N N -11.364 -35.057 -9.672 -4.728 2.350 0.982 C6 5NY 33
5NY C1 C27 C 0 1 Y N N N N N -11.907 -34.326 -8.626 -5.307 2.126 2.207 C1 5NY 34
5NY C C28 C 0 1 N N N N N N -11.067 -33.965 -7.420 -6.231 3.169 2.781 C 5NY 35
5NY C28 C29 C 0 1 Y N N N N N -10.613 -36.849 -12.343 -3.035 2.226 -1.834 C28 5NY 36
5NY N8 N6 N 0 1 Y N N N N N -10.403 -37.605 -13.431 -3.678 3.426 -1.888 N8 5NY 37
5NY N7 N7 N 0 1 Y N N N N N -9.110 -37.967 -13.387 -3.295 3.993 -3.116 N7 5NY 38
5NY N6 N8 N 0 1 Y N N N N N -8.550 -37.452 -12.322 -2.499 3.154 -3.684 N6 5NY 39
5NY N5 N9 N 0 1 Y N N N N N -9.465 -36.750 -11.655 -2.332 2.118 -2.944 N5 5NY 40
5NY H20 H1 H 0 1 N N N N N N -13.648 -41.428 -9.729 5.472 0.425 -0.886 H20 5NY 41
5NY H22 H2 H 0 1 N N N N N N -14.338 -42.689 -7.762 4.427 3.639 2.433 H22 5NY 42
5NY H21 H3 H 0 1 N N N N N N -16.488 -44.902 -10.620 6.951 1.800 -0.444 H21 5NY 43
5NY H19 H4 H 0 1 N N N N N N -17.501 -42.744 -11.054 2.934 2.270 2.022 H19 5NY 44
5NY H18 H5 H 0 1 N N N N N N -17.677 -40.780 -12.509 1.166 0.639 1.525 H18 5NY 45
5NY H17 H6 H 0 1 N N N N N N -15.588 -37.496 -11.563 -0.038 -0.686 1.112 H17 5NY 46
5NY H7 H7 H 0 1 N N N N N N -15.488 -34.305 -13.023 -2.999 -2.680 0.703 H7 5NY 47
5NY H6 H8 H 0 1 N N N N N N -16.059 -35.221 -11.587 -1.956 -1.909 1.924 H6 5NY 48
5NY H4 H9 H 0 1 N N N N N N -15.073 -33.966 -9.861 -4.054 -0.929 3.044 H4 5NY 49
5NY H3 H10 H 0 1 N N N N N N -13.691 -33.398 -7.888 -5.551 0.846 3.890 H3 5NY 50
5NY H16 H11 H 0 1 N N N N N N -18.219 -37.453 -12.466 0.887 -3.140 1.704 H16 5NY 51
5NY H15 H12 H 0 1 N N N N N N -20.498 -37.001 -13.267 1.586 -5.473 2.068 H15 5NY 52
5NY H14 H13 H 0 1 N N N N N N -20.863 -35.505 -15.182 0.510 -7.292 0.805 H14 5NY 53
5NY H13 H14 H 0 1 N N N N N N -18.938 -34.466 -16.310 -1.269 -6.779 -0.818 H13 5NY 54
5NY H12 H15 H 0 1 N N N N N N -16.653 -34.917 -15.526 -1.969 -4.446 -1.182 H12 5NY 55
5NY H9 H16 H 0 1 N N N N N N -14.751 -35.544 -15.037 -0.542 -2.402 -2.085 H9 5NY 56
5NY H8 H17 H 0 1 N N N N N N -15.089 -37.297 -15.232 -2.276 -2.547 -1.701 H8 5NY 57
5NY H11 H18 H 0 1 N N N N N N -13.288 -37.932 -13.875 -0.572 -0.015 -1.683 H11 5NY 58
5NY H10 H19 H 0 1 N N N N N N -12.639 -36.519 -14.774 -1.976 -0.375 -2.721 H10 5NY 59
5NY H5 H20 H 0 1 N N N N N N -10.329 -35.361 -9.622 -4.919 3.254 0.423 H5 5NY 60
5NY H2 H21 H 0 1 N N N N N N -10.581 -32.993 -7.589 -5.656 3.874 3.380 H2 5NY 61
5NY H1 H22 H 0 1 N N N N N N -11.711 -33.903 -6.530 -6.727 3.701 1.969 H1 5NY 62
5NY H H23 H 0 1 N N N N N N -10.299 -34.737 -7.264 -6.980 2.685 3.408 H 5NY 63
5NY H23 H24 H 0 1 N N N N N N -11.073 -37.849 -14.132 -4.273 3.807 -1.222 H23 5NY 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5NY C15 C14 DOUB Y N 1
5NY C15 C16 SING Y N 2
5NY C14 C13 SING Y N 3
5NY C16 C17 DOUB Y N 4
5NY C11 C12 SING N N 5
5NY C11 C10 SING N N 6
5NY O C19 DOUB N N 7
5NY C12 C8 SING N N 8
5NY C13 C10 SING N N 9
5NY C13 C18 DOUB Y N 10
5NY C17 C18 SING Y N 11
5NY N8 N7 SING Y N 12
5NY N8 C28 SING Y N 13
5NY C10 N1 SING N N 14
5NY C10 C9 SING N N 15
5NY N7 N6 DOUB Y N 16
5NY C19 N1 SING N N 17
5NY C19 C20 SING N N 18
5NY C8 N SING Y N 19
5NY C8 C7 DOUB Y N 20
5NY C9 N SING N N 21
5NY C28 C7 SING N N 22
5NY C28 N5 DOUB Y N 23
5NY N6 N5 SING Y N 24
5NY N C4 SING Y N 25
5NY C7 C5 SING Y N 26
5NY C20 C21 DOUB Y N 27
5NY C20 C25 SING Y N 28
5NY C21 C22 SING Y N 29
5NY CL C25 SING N N 30
5NY C25 C24 DOUB Y N 31
5NY C22 C23 DOUB Y N 32
5NY C4 C5 DOUB Y N 33
5NY C4 C3 SING Y N 34
5NY C5 C6 SING Y N 35
5NY C24 C23 SING Y N 36
5NY C23 N2 SING N N 37
5NY C3 C2 DOUB Y N 38
5NY C26 N2 SING Y N 39
5NY C26 N3 DOUB Y N 40
5NY C6 C1 DOUB Y N 41
5NY N2 C27 SING Y N 42
5NY N3 N4 SING Y N 43
5NY C2 C1 SING Y N 44
5NY C1 C SING N N 45
5NY C27 N4 DOUB Y N 46
5NY C24 H20 SING N N 47
5NY C27 H22 SING N N 48
5NY C26 H21 SING N N 49
5NY C22 H19 SING N N 50
5NY C21 H18 SING N N 51
5NY N1 H17 SING N N 52
5NY C9 H7 SING N N 53
5NY C9 H6 SING N N 54
5NY C3 H4 SING N N 55
5NY C2 H3 SING N N 56
5NY C18 H16 SING N N 57
5NY C17 H15 SING N N 58
5NY C16 H14 SING N N 59
5NY C15 H13 SING N N 60
5NY C14 H12 SING N N 61
5NY C11 H9 SING N N 62
5NY C11 H8 SING N N 63
5NY C12 H11 SING N N 64
5NY C12 H10 SING N N 65
5NY C6 H5 SING N N 66
5NY C H2 SING N N 67
5NY C H1 SING N N 68
5NY C H SING N N 69
5NY N8 H23 SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5NY InChI InChI 1.03 InChI=1S/C29H24ClN9O/c1-18-7-10-24-22(13-18)26(27-34-36-37-35-27)25-11-12-29(15-39(24)25,19-5-3-2-4-6-19)33-28(40)21-9-8-20(14-23(21)30)38-16-31-32-17-38/h2-10,13-14,16-17H,11-12,15H2,1H3,(H,33,40)(H,34,35,36,37)/t29-/m1/s1
5NY InChIKey InChI 1.03 TUCDMISJVGVBLL-GDLZYMKVSA-N
5NY SMILES_CANONICAL CACTVS 3.385 Cc1ccc2n3C[C@@](CCc3c(c4[nH]nnn4)c2c1)(NC(=O)c5ccc(cc5Cl)n6cnnc6)c7ccccc7
5NY SMILES CACTVS 3.385 Cc1ccc2n3C[C](CCc3c(c4[nH]nnn4)c2c1)(NC(=O)c5ccc(cc5Cl)n6cnnc6)c7ccccc7
5NY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 Cc1ccc2c(c1)c(c3n2C[C@](CC3)(c4ccccc4)NC(=O)c5ccc(cc5Cl)n6cnnc6)c7[nH]nnn7
5NY SMILES "OpenEye OEToolkits" 2.0.4 Cc1ccc2c(c1)c(c3n2CC(CC3)(c4ccccc4)NC(=O)c5ccc(cc5Cl)n6cnnc6)c7[nH]nnn7
#
_pdbx_chem_comp_identifier.comp_id 5NY
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier
2-chloranyl-~{N}-[(7~{S})-2-methyl-7-phenyl-10-(1~{H}-1,2,3,4-tetrazol-5-yl)-8,9-dihydro-6~{H}-pyrido[1,2-a]indol-7-yl]-4-(1,2,4-triazol-4-yl)benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5NY 'Create component' 2015-10-28 RCSB
5NY 'Initial release' 2015-11-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5NY CL Cl 8.516 -2.956 1
5NY C25 C 9.941 -3.425 2
5NY C24 C 10.247 -4.894 3
5NY C23 C 11.671 -5.362 4
5NY N2 N 11.978 -6.831 5
5NY C27 C 13.346 -7.446 6
5NY N4 N 13.183 -8.937 7
5NY N3 N 11.715 -9.244 8
5NY C26 C 10.970 -7.942 9
5NY C22 C 12.790 -4.363 10
5NY C21 C 12.484 -2.894 11
5NY C20 C 11.059 -2.426 12
5NY C19 C 10.753 -0.957 13
5NY O O 9.328 -0.488 14
5NY N1 N 11.871 0.042 15
5NY C10 C 11.565 1.511 16
5NY C9 C 10.034 1.198 17
5NY N N 9.007 2.375 18
5NY C4 C 7.507 2.375 19
5NY C3 C 6.479 1.198 20
5NY C2 C 4.949 1.511 21
5NY C13 C 13.034 1.817 22
5NY C18 C 13.503 3.242 23
5NY C17 C 14.971 3.548 24
5NY C16 C 15.970 2.429 25
5NY C15 C 15.502 1.004 26
5NY C14 C 14.033 0.698 27
5NY C11 C 12.048 2.997 28
5NY C12 C 10.994 4.150 29
5NY C8 C 9.470 3.801 30
5NY C7 C 8.257 4.683 31
5NY C5 C 7.044 3.801 32
5NY C6 C 5.521 4.150 33
5NY C1 C 4.466 2.997 34
5NY C C 3.000 3.314 35
5NY C28 C 8.257 6.183 36
5NY N8 N 9.470 7.064 37
5NY N7 N 9.007 8.491 38
5NY N6 N 7.507 8.491 39
5NY N5 N 7.044 7.064 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5NY C15 C14 DOUBLE NONE 1
5NY C15 C16 SINGLE NONE 2
5NY C14 C13 SINGLE NONE 3
5NY C16 C17 DOUBLE NONE 4
5NY C11 C12 SINGLE NONE 5
5NY C11 C10 SINGLE NONE 6
5NY O C19 DOUBLE NONE 7
5NY C12 C8 SINGLE NONE 8
5NY C13 C10 SINGLE NONE 9
5NY C13 C18 DOUBLE NONE 10
5NY C17 C18 SINGLE NONE 11
5NY N8 N7 SINGLE NONE 12
5NY N8 C28 SINGLE NONE 13
5NY C10 N1 SINGLE BEGINWEDGE 14
5NY C10 C9 SINGLE NONE 15
5NY N7 N6 DOUBLE NONE 16
5NY C19 N1 SINGLE NONE 17
5NY C19 C20 SINGLE NONE 18
5NY C8 N SINGLE NONE 19
5NY C8 C7 DOUBLE NONE 20
5NY C9 N SINGLE NONE 21
5NY C28 C7 SINGLE NONE 22
5NY C28 N5 DOUBLE NONE 23
5NY N6 N5 SINGLE NONE 24
5NY N C4 SINGLE NONE 25
5NY C7 C5 SINGLE NONE 26
5NY C20 C21 SINGLE NONE 27
5NY C20 C25 DOUBLE NONE 28
5NY C21 C22 DOUBLE NONE 29
5NY CL C25 SINGLE NONE 30
5NY C25 C24 SINGLE NONE 31
5NY C22 C23 SINGLE NONE 32
5NY C4 C5 DOUBLE NONE 33
5NY C4 C3 SINGLE NONE 34
5NY C5 C6 SINGLE NONE 35
5NY C24 C23 DOUBLE NONE 36
5NY C23 N2 SINGLE NONE 37
5NY C3 C2 DOUBLE NONE 38
5NY C26 N2 SINGLE NONE 39
5NY C26 N3 DOUBLE NONE 40
5NY C6 C1 DOUBLE NONE 41
5NY N2 C27 SINGLE NONE 42
5NY N3 N4 SINGLE NONE 43
5NY C2 C1 SINGLE NONE 44
5NY C1 C SINGLE NONE 45
5NY C27 N4 DOUBLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5NY MurckoScaffold S1 scaffold 'O=C(N[C@]1(c2ccccc2)CCc2c(-c3nnn[nH]3)c3ccccc3n2C1)c1ccc(-n2cnnc2)cc1' InChI=1S/C28H23N9O/c38-27(19-10-12-21(13-11-19)36-17-29-30-18-36)31-28(20-6-2-1-3-7-20)15-14-24-25(26-32-34-35-33-26)22-8-4-5-9-23(22)37(24)16-28/h1-13,17-18H,14-16H2,(H,31,38)(H,32,33,34,35)/t28-/m1/s1 IWPIYDSGQQUZTN-MUUNZHRXSA-N
5NY amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5NY indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
5NY phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5NY pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
5NY Z1259340319 F5 fragment CC(N)CCc1cccn1C InChI=1S/C9H16N2/c1-8(10)5-6-9-4-3-7-11(9)2/h3-4,7-8H,5-6,10H2,1-2H3 XVKRHROYXMXJKI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5NY C25 S1 1
5NY C24 S1 1
5NY C23 S1 1
5NY N2 S1 1
5NY C27 S1 1
5NY N4 S1 1
5NY N3 S1 1
5NY C26 S1 1
5NY C22 S1 1
5NY C21 S1 1
5NY C20 S1 1
5NY C19 S1 1
5NY O S1 1
5NY N1 S1 1
5NY C10 S1 1
5NY C9 S1 1
5NY N S1 1
5NY C4 S1 1
5NY C3 S1 1
5NY C2 S1 1
5NY C13 S1 1
5NY C18 S1 1
5NY C17 S1 1
5NY C16 S1 1
5NY C15 S1 1
5NY C14 S1 1
5NY C11 S1 1
5NY C12 S1 1
5NY C8 S1 1
5NY C7 S1 1
5NY C5 S1 1
5NY C6 S1 1
5NY C1 S1 1
5NY C28 S1 1
5NY N8 S1 1
5NY N7 S1 1
5NY N6 S1 1
5NY N5 S1 1
5NY N1 F1 1
5NY C19 F1 1
5NY O F1 1
5NY C20 F1 1
5NY C4 F2 1
5NY C5 F2 1
5NY C7 F2 1
5NY C8 F2 1
5NY N F2 1
5NY C6 F2 1
5NY C1 F2 1
5NY C2 F2 1
5NY C3 F2 1
5NY C25 F3 1
5NY C20 F3 1
5NY C21 F3 1
5NY C22 F3 1
5NY C23 F3 1
5NY C24 F3 1
5NY C4 F3 2
5NY C5 F3 2
5NY C6 F3 2
5NY C1 F3 2
5NY C2 F3 2
5NY C3 F3 2
5NY C13 F3 3
5NY C14 F3 3
5NY C15 F3 3
5NY C16 F3 3
5NY C17 F3 3
5NY C18 F3 3
5NY C4 F4 1
5NY C5 F4 1
5NY C7 F4 1
5NY C8 F4 1
5NY N F4 1
5NY C13 F5 1
5NY C10 F5 1
5NY N1 F5 1
5NY C11 F5 1
5NY C12 F5 1
5NY C8 F5 1
5NY C7 F5 1
5NY C5 F5 1
5NY C4 F5 1
5NY N F5 1
5NY C9 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5NY
_pdbe_chem_comp_rdkit_properties.exactmw 549.179
_pdbe_chem_comp_rdkit_properties.amw 550.026
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.172
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 267.395
_pdbe_chem_comp_rdkit_properties.tpsa 119.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.418
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.870
_pdbe_chem_comp_rdkit_properties.chi0v 20.067
_pdbe_chem_comp_rdkit_properties.chi1v 11.254
_pdbe_chem_comp_rdkit_properties.chi2v 5.850
_pdbe_chem_comp_rdkit_properties.chi3v 5.850
_pdbe_chem_comp_rdkit_properties.chi4v 4.096
_pdbe_chem_comp_rdkit_properties.chi0n 43.311
_pdbe_chem_comp_rdkit_properties.chi1n 22.771
_pdbe_chem_comp_rdkit_properties.chi2n 5.566
_pdbe_chem_comp_rdkit_properties.chi3n 5.566
_pdbe_chem_comp_rdkit_properties.chi4n 3.879
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.830
_pdbe_chem_comp_rdkit_properties.kappa1 9.669
_pdbe_chem_comp_rdkit_properties.kappa2 9.421
_pdbe_chem_comp_rdkit_properties.kappa3 3.955
_pdbe_chem_comp_rdkit_properties.Phi 2.277
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5NY UniChem PDBe 5NY
5NY UniChem ZINC ZINC000263621069
5NY UniChem SureChEMBL SCHEMBL17999529
5NY UniChem PubChem 92045010
5NY UniChem BRENDA 236067
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5NY CL 4.275 0.195 3.231 ETKDGv3 1
5NY C25 4.686 0.418 1.532 ETKDGv3 2
5NY C24 6.110 0.654 1.202 ETKDGv3 3
5NY C23 6.514 0.777 -0.075 ETKDGv3 4
5NY N2 7.900 0.999 -0.395 ETKDGv3 5
5NY C27 8.991 1.328 0.460 ETKDGv3 6
5NY N4 10.088 1.466 -0.207 ETKDGv3 7
5NY N3 9.804 1.236 -1.560 ETKDGv3 8
5NY C26 8.545 0.970 -1.663 ETKDGv3 9
5NY C22 5.503 0.677 -1.157 ETKDGv3 10
5NY C21 4.215 0.465 -0.866 ETKDGv3 11
5NY C20 3.769 0.326 0.542 ETKDGv3 12
5NY C19 2.331 0.100 0.812 ETKDGv3 13
5NY O 1.776 0.688 1.780 ETKDGv3 14
5NY N1 1.566 -0.777 -0.036 ETKDGv3 15
5NY C10 0.107 -0.968 0.087 ETKDGv3 16
5NY C9 -0.583 0.382 -0.274 ETKDGv3 17
5NY N -2.008 0.191 -0.523 ETKDGv3 18
5NY C4 -3.032 1.167 -0.625 ETKDGv3 19
5NY C3 -2.917 2.617 -0.399 ETKDGv3 20
5NY C2 -3.998 3.383 -0.620 ETKDGv3 21
5NY C13 -0.215 -1.473 1.506 ETKDGv3 22
5NY C18 0.478 -2.518 2.010 ETKDGv3 23
5NY C17 0.187 -3.047 3.358 ETKDGv3 24
5NY C16 -0.780 -2.499 4.098 ETKDGv3 25
5NY C15 -1.556 -1.363 3.570 ETKDGv3 26
5NY C14 -1.295 -0.875 2.351 ETKDGv3 27
5NY C11 -0.345 -2.043 -0.952 ETKDGv3 28
5NY C12 -1.861 -2.312 -0.945 ETKDGv3 29
5NY C8 -2.614 -1.016 -0.970 ETKDGv3 30
5NY C7 -3.914 -0.821 -1.238 ETKDGv3 31
5NY C5 -4.162 0.614 -1.029 ETKDGv3 32
5NY C6 -5.350 1.443 -1.314 ETKDGv3 33
5NY C1 -5.279 2.773 -1.094 ETKDGv3 34
5NY C -6.450 3.654 -1.412 ETKDGv3 35
5NY C28 -4.917 -1.844 -1.593 ETKDGv3 36
5NY N8 -6.310 -1.735 -1.355 ETKDGv3 37
5NY N7 -6.817 -2.949 -1.817 ETKDGv3 38
5NY N6 -5.864 -3.657 -2.271 ETKDGv3 39
5NY N5 -4.641 -2.983 -2.137 ETKDGv3 40
5NY H20 6.821 0.707 2.014 ETKDGv3 41
5NY H22 8.928 1.464 1.531 ETKDGv3 42
5NY H21 8.063 0.744 -2.604 ETKDGv3 43
5NY H19 5.793 0.790 -2.192 ETKDGv3 44
5NY H18 3.494 0.417 -1.672 ETKDGv3 45
5NY H17 2.088 -1.330 -0.753 ETKDGv3 46
5NY H7 -0.122 0.797 -1.198 ETKDGv3 47
5NY H6 -0.439 1.131 0.532 ETKDGv3 48
5NY H4 -1.985 3.057 -0.068 ETKDGv3 49
5NY H3 -3.933 4.453 -0.465 ETKDGv3 50
5NY H16 1.264 -2.991 1.435 ETKDGv3 51
5NY H15 0.758 -3.881 3.743 ETKDGv3 52
5NY H14 -0.995 -2.886 5.086 ETKDGv3 53
5NY H13 -2.338 -0.922 4.175 ETKDGv3 54
5NY H12 -1.885 -0.040 2.007 ETKDGv3 55
5NY H9 -0.054 -1.706 -1.972 ETKDGv3 56
5NY H8 0.186 -3.004 -0.772 ETKDGv3 57
5NY H11 -2.110 -2.922 -1.838 ETKDGv3 58
5NY H10 -2.143 -2.880 -0.033 ETKDGv3 59
5NY H5 -6.249 0.997 -1.717 ETKDGv3 60
5NY H2 -7.402 3.153 -1.134 ETKDGv3 61
5NY H1 -6.385 4.608 -0.846 ETKDGv3 62
5NY H -6.460 3.879 -2.499 ETKDGv3 63
5NY H23 -6.828 -1.043 -0.771 ETKDGv3 64
#