data_5R4
#
_chem_comp.id 5R4
_chem_comp.name
3-[3-(acetyl{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)prop-1-yn-1-yl]benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H24 Cl N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-23
_chem_comp.pdbx_modified_date 2022-07-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 481.931
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5R4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7RKK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5R4 N15 N1 N 0 1 N N N N N N 20.408 3.365 5.524 -1.568 -1.494 0.187 N15 5R4 1
5R4 C23 C1 C 0 1 Y N N N N N 17.689 8.364 6.290 -5.991 0.986 1.618 C23 5R4 2
5R4 C24 C2 C 0 1 Y N N N N N 16.597 9.194 6.461 -7.129 1.648 2.035 C24 5R4 3
5R4 C30 C3 C 0 1 Y N N N N N 16.457 6.963 4.855 -6.950 0.709 -0.579 C30 5R4 4
5R4 C31 C4 C 0 1 N N R N N N 21.822 0.955 3.685 1.315 -2.189 -0.072 C31 5R4 5
5R4 C33 C5 C 0 1 N N S N N N 21.839 -0.269 2.687 2.779 -1.848 0.278 C33 5R4 6
5R4 C27 C6 C 0 1 N N N N N N 14.027 7.514 4.327 -9.225 1.582 -1.086 C27 5R4 7
5R4 C26 C7 C 0 1 Y N N N N N 15.332 7.790 5.014 -8.099 1.369 -0.150 C26 5R4 8
5R4 C25 C8 C 0 1 Y N N N N N 15.387 8.937 5.831 -8.181 1.842 1.162 C25 5R4 9
5R4 C14 C9 C 0 1 N N N N N N 19.709 2.447 4.551 -0.503 -0.496 0.312 C14 5R4 10
5R4 C17 C10 C 0 1 N N N N N N 20.211 1.635 7.491 -2.821 -3.457 1.021 C17 5R4 11
5R4 C22 C11 C 0 1 Y N N N N N 17.669 7.206 5.473 -5.895 0.512 0.309 C22 5R4 12
5R4 C21 C12 C 0 1 N N N N N N 18.853 6.393 5.344 -4.709 -0.165 -0.124 C21 5R4 13
5R4 C19 C13 C 0 1 N N N N N N 20.860 4.697 5.070 -2.519 -1.416 -0.924 C19 5R4 14
5R4 C12 C14 C 0 1 N N N N N N 19.508 0.202 3.301 1.766 0.197 -0.529 C12 5R4 15
5R4 C02 C15 C 0 1 Y N N N N N 18.880 -4.983 0.701 7.407 1.658 -0.108 C02 5R4 16
5R4 C04 C16 C 0 1 Y N N N N N 19.357 -5.250 2.938 7.078 0.628 -2.142 C04 5R4 17
5R4 C06 C17 C 0 1 Y N N N N N 19.671 -3.164 2.025 5.369 0.469 -0.616 C06 5R4 18
5R4 C07 C18 C 0 1 Y N N N N N 19.241 -3.638 0.755 6.141 1.226 0.289 C07 5R4 19
5R4 C08 C19 C 0 1 Y N N N N N 19.308 -2.525 -0.138 5.331 1.361 1.500 C08 5R4 20
5R4 C09 C20 C 0 1 Y N N N N N 19.759 -1.416 0.541 4.178 0.713 1.270 C09 5R4 21
5R4 C11 C21 C 0 1 N N R N N N 20.473 -0.942 2.979 3.094 -0.599 -0.582 C11 5R4 22
5R4 C13 C22 C 0 1 N N R N N N 20.369 1.065 4.254 0.672 -0.889 -0.586 C13 5R4 23
5R4 C16 C23 C 0 1 N N N N N N 20.647 2.969 6.928 -1.669 -2.488 1.092 C16 5R4 24
5R4 C20 C24 C 0 1 N N N N N N 19.790 5.674 5.211 -3.738 -0.720 -0.479 C20 5R4 25
5R4 N03 N2 N 0 1 Y N N N N N 18.922 -5.811 1.742 7.830 1.339 -1.321 N03 5R4 26
5R4 N05 N3 N 0 1 Y N N N N N 19.733 -3.978 3.137 5.879 0.198 -1.813 N05 5R4 27
5R4 N10 N4 N 0 1 Y N N N N N 19.983 -1.818 1.893 4.188 0.176 0.009 N10 5R4 28
5R4 N28 N5 N 0 1 N N N N N N 13.420 8.495 3.626 -10.336 2.220 -0.669 N28 5R4 29
5R4 O18 O1 O 0 1 N N N N N N 21.205 3.717 7.691 -0.834 -2.602 1.964 O18 5R4 30
5R4 O29 O2 O 0 1 N N N N N N 13.514 6.373 4.405 -9.147 1.181 -2.230 O29 5R4 31
5R4 O32 O3 O 0 1 N N N N N N 22.718 0.658 4.710 1.277 -3.190 -1.091 O32 5R4 32
5R4 O34 O4 O 0 1 N N N N N N 22.886 -1.098 3.101 3.643 -2.930 -0.074 O34 5R4 33
5R4 CL1 CL1 CL 0 0 N N N N N N 18.320 -5.716 -0.815 8.400 2.599 0.961 CL1 5R4 34
5R4 H1 H1 H 0 1 N N N N N N 18.605 8.611 6.806 -5.172 0.838 2.307 H1 5R4 35
5R4 H2 H2 H 0 1 N N N N N N 16.687 10.061 7.098 -7.197 2.016 3.048 H2 5R4 36
5R4 H3 H3 H 0 1 N N N N N N 16.370 6.095 4.219 -6.882 0.341 -1.592 H3 5R4 37
5R4 H4 H4 H 0 1 N N N N N N 22.086 1.878 3.147 0.790 -2.540 0.816 H4 5R4 38
5R4 H5 H5 H 0 1 N N N N N N 21.914 0.067 1.642 2.872 -1.614 1.339 H5 5R4 39
5R4 H6 H6 H 0 1 N N N N N N 14.531 9.583 5.960 -9.068 2.361 1.493 H6 5R4 40
5R4 H7 H7 H 0 1 N N N N N N 19.627 2.984 3.594 -0.882 0.480 0.008 H7 5R4 41
5R4 H8 H8 H 0 1 N N N N N N 18.703 2.251 4.949 -0.169 -0.449 1.348 H8 5R4 42
5R4 H9 H9 H 0 1 N N N N N N 20.493 1.575 8.553 -3.453 -3.209 0.168 H9 5R4 43
5R4 H10 H10 H 0 1 N N N N N N 19.120 1.536 7.395 -2.437 -4.470 0.906 H10 5R4 44
5R4 H11 H11 H 0 1 N N N N N N 20.703 0.824 6.935 -3.407 -3.393 1.938 H11 5R4 45
5R4 H12 H12 H 0 1 N N N N N N 21.158 4.637 4.013 -2.068 -0.866 -1.750 H12 5R4 46
5R4 H13 H13 H 0 1 N N N N N N 21.721 5.013 5.677 -2.776 -2.422 -1.254 H13 5R4 47
5R4 H14 H14 H 0 1 N N N N N N 19.228 0.760 2.395 1.696 0.761 0.401 H14 5R4 48
5R4 H15 H15 H 0 1 N N N N N N 18.600 -0.166 3.801 1.686 0.865 -1.386 H15 5R4 49
5R4 H16 H16 H 0 1 N N N N N N 19.396 -5.906 3.795 7.463 0.391 -3.123 H16 5R4 50
5R4 H17 H17 H 0 1 N N N N N N 19.045 -2.550 -1.185 5.608 1.881 2.405 H17 5R4 51
5R4 H18 H18 H 0 1 N N N N N N 19.914 -0.429 0.130 3.364 0.627 1.974 H18 5R4 52
5R4 H19 H19 H 0 1 N N N N N N 20.590 -1.549 3.889 3.332 -0.886 -1.606 H19 5R4 53
5R4 H20 H20 H 0 1 N N N N N N 20.384 0.529 5.214 0.330 -1.022 -1.612 H20 5R4 54
5R4 H21 H21 H 0 1 N N N N N N 12.552 8.315 3.162 -11.074 2.360 -1.282 H21 5R4 55
5R4 H22 H22 H 0 1 N N N N N N 13.838 9.402 3.570 -10.398 2.540 0.245 H22 5R4 56
5R4 H23 H23 H 0 1 N N N N N N 22.736 1.375 5.333 1.668 -4.034 -0.828 H23 5R4 57
5R4 H24 H24 H 0 1 N N N N N N 23.717 -0.675 2.917 3.489 -3.738 0.434 H24 5R4 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5R4 CL1 C02 SING N N 1
5R4 C08 C09 DOUB Y N 2
5R4 C08 C07 SING Y N 3
5R4 C09 N10 SING Y N 4
5R4 C02 C07 DOUB Y N 5
5R4 C02 N03 SING Y N 6
5R4 C07 C06 SING Y N 7
5R4 N03 C04 DOUB Y N 8
5R4 N10 C06 SING Y N 9
5R4 N10 C11 SING N N 10
5R4 C06 N05 DOUB Y N 11
5R4 C33 C11 SING N N 12
5R4 C33 O34 SING N N 13
5R4 C33 C31 SING N N 14
5R4 C04 N05 SING Y N 15
5R4 C11 C12 SING N N 16
5R4 C12 C13 SING N N 17
5R4 N28 C27 SING N N 18
5R4 C31 C13 SING N N 19
5R4 C31 O32 SING N N 20
5R4 C13 C14 SING N N 21
5R4 C27 O29 DOUB N N 22
5R4 C27 C26 SING N N 23
5R4 C14 N15 SING N N 24
5R4 C30 C26 DOUB Y N 25
5R4 C30 C22 SING Y N 26
5R4 C26 C25 SING Y N 27
5R4 C19 C20 SING N N 28
5R4 C19 N15 SING N N 29
5R4 C20 C21 TRIP N N 30
5R4 C21 C22 SING N N 31
5R4 C22 C23 DOUB Y N 32
5R4 N15 C16 SING N N 33
5R4 C25 C24 DOUB Y N 34
5R4 C23 C24 SING Y N 35
5R4 C16 C17 SING N N 36
5R4 C16 O18 DOUB N N 37
5R4 C23 H1 SING N N 38
5R4 C24 H2 SING N N 39
5R4 C30 H3 SING N N 40
5R4 C31 H4 SING N N 41
5R4 C33 H5 SING N N 42
5R4 C25 H6 SING N N 43
5R4 C14 H7 SING N N 44
5R4 C14 H8 SING N N 45
5R4 C17 H9 SING N N 46
5R4 C17 H10 SING N N 47
5R4 C17 H11 SING N N 48
5R4 C19 H12 SING N N 49
5R4 C19 H13 SING N N 50
5R4 C12 H14 SING N N 51
5R4 C12 H15 SING N N 52
5R4 C04 H16 SING N N 53
5R4 C08 H17 SING N N 54
5R4 C09 H18 SING N N 55
5R4 C11 H19 SING N N 56
5R4 C13 H20 SING N N 57
5R4 N28 H21 SING N N 58
5R4 N28 H22 SING N N 59
5R4 O32 H23 SING N N 60
5R4 O34 H24 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5R4 SMILES ACDLabs 12.01 "NC(=O)c1cccc(c1)C#CCN(CC1CC(C(O)C1O)n1ccc2c1ncnc2Cl)C(C)=O"
5R4 InChI InChI 1.03 InChI=1S/C24H24ClN5O4/c1-14(31)29(8-3-5-15-4-2-6-16(10-15)23(26)34)12-17-11-19(21(33)20(17)32)30-9-7-18-22(25)27-13-28-24(18)30/h2,4,6-7,9-10,13,17,19-21,32-33H,8,11-12H2,1H3,(H2,26,34)/t17-,19-,20-,21+/m1/s1
5R4 InChIKey InChI 1.03 AHVJTPYPUIHNLS-WLRLJWMZSA-N
5R4 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(CC#Cc1cccc(c1)C(N)=O)C[C@H]2C[C@H]([C@H](O)[C@@H]2O)n3ccc4c(Cl)ncnc34"
5R4 SMILES CACTVS 3.385 "CC(=O)N(CC#Cc1cccc(c1)C(N)=O)C[CH]2C[CH]([CH](O)[CH]2O)n3ccc4c(Cl)ncnc34"
5R4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N(CC#Cc1cccc(c1)C(=O)N)C[C@H]2C[C@H]([C@@H]([C@@H]2O)O)n3ccc4c3ncnc4Cl"
5R4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N(CC#Cc1cccc(c1)C(=O)N)CC2CC(C(C2O)O)n3ccc4c3ncnc4Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5R4 "SYSTEMATIC NAME" ACDLabs 12.01 3-[3-(acetyl{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)prop-1-yn-1-yl]benzamide
5R4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 3-[3-[[(1~{R},2~{R},3~{S},4~{R})-4-(4-chloranylpyrrolo[2,3-d]pyrimidin-7-yl)-2,3-bis(oxidanyl)cyclopentyl]methyl-ethanoyl-amino]prop-1-ynyl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5R4 'Create component' 2021-07-23 RCSB
5R4 'Initial release' 2022-07-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5R4 N15 N 11.498 -3.046 1
5R4 C23 C 16.975 -0.596 2
5R4 C24 C 18.344 0.016 3
5R4 C30 C 15.914 1.776 4
5R4 C31 C 7.487 -3.245 5
5R4 C33 C 6.604 -2.033 6
5R4 C27 C 17.437 3.880 7
5R4 C26 C 17.283 2.388 8
5R4 C25 C 18.498 1.508 9
5R4 C14 C 10.129 -3.659 10
5R4 C17 C 12.559 -5.418 11
5R4 C22 C 15.760 0.283 12
5R4 C21 C 14.390 -0.329 13
5R4 C19 C 11.652 -1.554 14
5R4 C12 C 8.911 -1.279 15
5R4 C02 C 4.299 3.315 16
5R4 C04 C 3.000 1.065 17
5R4 C06 C 5.598 1.065 18
5R4 C07 C 5.598 2.565 19
5R4 C08 C 7.018 3.022 20
5R4 C09 C 7.893 1.815 21
5R4 C11 C 7.483 -0.818 22
5R4 C13 C 8.913 -2.779 23
5R4 C16 C 12.713 -3.925 24
5R4 C20 C 13.021 -0.941 25
5R4 N03 N 3.000 2.565 26
5R4 N05 N 4.299 0.315 27
5R4 N10 N 7.018 0.608 28
5R4 N28 N 16.222 4.760 29
5R4 O18 O 14.082 -3.313 30
5R4 O29 O 18.806 4.492 31
5R4 O32 O 7.027 -4.672 32
5R4 O34 O 5.104 -2.035 33
5R4 CL1 Cl 4.299 4.815 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5R4 CL1 C02 SINGLE NONE 1
5R4 C08 C09 DOUBLE NONE 2
5R4 C08 C07 SINGLE NONE 3
5R4 C09 N10 SINGLE NONE 4
5R4 C02 C07 DOUBLE NONE 5
5R4 C02 N03 SINGLE NONE 6
5R4 C07 C06 SINGLE NONE 7
5R4 N03 C04 DOUBLE NONE 8
5R4 N10 C06 SINGLE NONE 9
5R4 C11 N10 SINGLE BEGINDASH 10
5R4 C06 N05 DOUBLE NONE 11
5R4 C33 C11 SINGLE NONE 12
5R4 C33 O34 SINGLE BEGINWEDGE 13
5R4 C33 C31 SINGLE NONE 14
5R4 C04 N05 SINGLE NONE 15
5R4 C11 C12 SINGLE NONE 16
5R4 C12 C13 SINGLE NONE 17
5R4 N28 C27 SINGLE NONE 18
5R4 C31 C13 SINGLE NONE 19
5R4 C31 O32 SINGLE BEGINWEDGE 20
5R4 C13 C14 SINGLE BEGINDASH 21
5R4 C27 O29 DOUBLE NONE 22
5R4 C27 C26 SINGLE NONE 23
5R4 C14 N15 SINGLE NONE 24
5R4 C30 C26 DOUBLE NONE 25
5R4 C30 C22 SINGLE NONE 26
5R4 C26 C25 SINGLE NONE 27
5R4 C19 C20 SINGLE NONE 28
5R4 C19 N15 SINGLE NONE 29
5R4 C20 C21 TRIPLE NONE 30
5R4 C21 C22 SINGLE NONE 31
5R4 C22 C23 DOUBLE NONE 32
5R4 N15 C16 SINGLE NONE 33
5R4 C25 C24 DOUBLE NONE 34
5R4 C23 C24 SINGLE NONE 35
5R4 C16 C17 SINGLE NONE 36
5R4 C16 O18 DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5R4 MurckoScaffold S1 scaffold 'C(#Cc1ccccc1)CNC[C@@H]1CC[C@H](n2ccc3cncnc32)C1' InChI=1S/C21H22N4/c1-2-5-17(6-3-1)7-4-11-22-14-18-8-9-20(13-18)25-12-10-19-15-23-16-24-21(19)25/h1-3,5-6,10,12,15-16,18,20,22H,8-9,11,13-14H2/t18-,20+/m1/s1 JRNIXJMNTOAHGY-QUCCMNQESA-N
5R4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5R4 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
5R4 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5R4 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
5R4 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5R4 N15 S1 1
5R4 C23 S1 1
5R4 C24 S1 1
5R4 C30 S1 1
5R4 C31 S1 1
5R4 C33 S1 1
5R4 C26 S1 1
5R4 C25 S1 1
5R4 C14 S1 1
5R4 C22 S1 1
5R4 C21 S1 1
5R4 C19 S1 1
5R4 C12 S1 1
5R4 C02 S1 1
5R4 C04 S1 1
5R4 C06 S1 1
5R4 C07 S1 1
5R4 C08 S1 1
5R4 C09 S1 1
5R4 C11 S1 1
5R4 C13 S1 1
5R4 C20 S1 1
5R4 N03 S1 1
5R4 N05 S1 1
5R4 N10 S1 1
5R4 N15 F1 1
5R4 C16 F1 1
5R4 O18 F1 1
5R4 C17 F1 1
5R4 N28 F1 2
5R4 C27 F1 2
5R4 O29 F1 2
5R4 C26 F1 2
5R4 C31 F2 1
5R4 C33 F2 1
5R4 C11 F2 1
5R4 C12 F2 1
5R4 C13 F2 1
5R4 C23 F3 1
5R4 C22 F3 1
5R4 C30 F3 1
5R4 C26 F3 1
5R4 C25 F3 1
5R4 C24 F3 1
5R4 C07 F4 1
5R4 C02 F4 1
5R4 N03 F4 1
5R4 C04 F4 1
5R4 N05 F4 1
5R4 C06 F4 1
5R4 C06 F5 1
5R4 C07 F5 1
5R4 C08 F5 1
5R4 C09 F5 1
5R4 N10 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5R4
_pdbe_chem_comp_rdkit_properties.exactmw 481.152
_pdbe_chem_comp_rdkit_properties.amw 481.940
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 234.725
_pdbe_chem_comp_rdkit_properties.tpsa 134.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.829
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.050
_pdbe_chem_comp_rdkit_properties.chi0v 17.003
_pdbe_chem_comp_rdkit_properties.chi1v 9.093
_pdbe_chem_comp_rdkit_properties.chi2v 4.248
_pdbe_chem_comp_rdkit_properties.chi3v 4.248
_pdbe_chem_comp_rdkit_properties.chi4v 2.676
_pdbe_chem_comp_rdkit_properties.chi0n 40.247
_pdbe_chem_comp_rdkit_properties.chi1n 20.426
_pdbe_chem_comp_rdkit_properties.chi2n 3.975
_pdbe_chem_comp_rdkit_properties.chi3n 3.975
_pdbe_chem_comp_rdkit_properties.chi4n 2.506
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.450
_pdbe_chem_comp_rdkit_properties.kappa1 8.054
_pdbe_chem_comp_rdkit_properties.kappa2 9.810
_pdbe_chem_comp_rdkit_properties.kappa3 4.749
_pdbe_chem_comp_rdkit_properties.Phi 2.324
#
_pdbe_chem_comp_external_mappings.comp_id 5R4
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 5R4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5R4 N15 0.955 -0.201 -0.742 ETKDGv3 1
5R4 C23 3.783 0.685 4.206 ETKDGv3 2
5R4 C24 4.884 1.169 5.060 ETKDGv3 3
5R4 C30 5.380 0.526 2.363 ETKDGv3 4
5R4 C31 -2.206 1.292 -2.337 ETKDGv3 5
5R4 C33 -3.362 0.465 -2.904 ETKDGv3 6
5R4 C27 7.752 1.139 2.563 ETKDGv3 7
5R4 C26 6.390 0.984 3.130 ETKDGv3 8
5R4 C25 6.117 1.310 4.556 ETKDGv3 9
5R4 C14 -0.136 0.765 -0.953 ETKDGv3 10
5R4 C17 2.988 -1.457 -1.701 ETKDGv3 11
5R4 C22 4.018 0.374 2.923 ETKDGv3 12
5R4 C21 2.952 -0.104 2.084 ETKDGv3 13
5R4 C19 0.991 -0.988 0.500 ETKDGv3 14
5R4 C12 -1.822 -1.025 -1.686 ETKDGv3 15
5R4 C02 -7.629 -1.219 0.028 ETKDGv3 16
5R4 C04 -7.511 -2.405 -2.060 ETKDGv3 17
5R4 C06 -5.571 -1.408 -1.178 ETKDGv3 18
5R4 C07 -6.329 -0.949 -0.059 ETKDGv3 19
5R4 C08 -5.409 -0.161 0.749 ETKDGv3 20
5R4 C09 -4.221 -0.172 0.128 ETKDGv3 21
5R4 C11 -3.268 -0.889 -2.189 ETKDGv3 22
5R4 C13 -1.100 0.278 -2.053 ETKDGv3 23
5R4 C16 1.998 -0.330 -1.738 ETKDGv3 24
5R4 C20 2.064 -0.503 1.373 ETKDGv3 25
5R4 N03 -8.222 -1.996 -1.036 ETKDGv3 26
5R4 N05 -6.103 -2.086 -2.149 ETKDGv3 27
5R4 N10 -4.229 -0.959 -1.081 ETKDGv3 28
5R4 N28 8.712 2.013 3.161 ETKDGv3 29
5R4 O18 2.090 0.518 -2.667 ETKDGv3 30
5R4 O29 8.077 0.498 1.526 ETKDGv3 31
5R4 O32 -1.763 2.269 -3.243 ETKDGv3 32
5R4 O34 -3.199 0.270 -4.287 ETKDGv3 33
5R4 CL1 -8.607 -0.641 1.363 ETKDGv3 34
5R4 H1 2.791 0.580 4.630 ETKDGv3 35
5R4 H2 4.693 1.401 6.100 ETKDGv3 36
5R4 H3 5.546 0.277 1.321 ETKDGv3 37
5R4 H4 -2.535 1.775 -1.387 ETKDGv3 38
5R4 H5 -4.340 0.963 -2.697 ETKDGv3 39
5R4 H6 6.912 1.637 5.212 ETKDGv3 40
5R4 H7 0.294 1.749 -1.240 ETKDGv3 41
5R4 H8 -0.701 0.936 -0.010 ETKDGv3 42
5R4 H9 2.453 -2.429 -1.702 ETKDGv3 43
5R4 H10 3.622 -1.378 -0.794 ETKDGv3 44
5R4 H11 3.649 -1.422 -2.593 ETKDGv3 45
5R4 H12 0.033 -0.910 1.054 ETKDGv3 46
5R4 H13 1.147 -2.063 0.273 ETKDGv3 47
5R4 H14 -1.319 -1.885 -2.183 ETKDGv3 48
5R4 H15 -1.795 -1.217 -0.592 ETKDGv3 49
5R4 H16 -7.981 -2.982 -2.844 ETKDGv3 50
5R4 H17 -5.638 0.374 1.661 ETKDGv3 51
5R4 H18 -3.356 0.370 0.485 ETKDGv3 52
5R4 H19 -3.484 -1.717 -2.901 ETKDGv3 53
5R4 H20 -0.530 0.108 -2.994 ETKDGv3 54
5R4 H21 9.682 2.060 2.779 ETKDGv3 55
5R4 H22 8.451 2.677 3.923 ETKDGv3 56
5R4 H23 -2.455 2.980 -3.251 ETKDGv3 57
5R4 H24 -3.602 1.057 -4.739 ETKDGv3 58
#