data_5X9
#
_chem_comp.id 5X9
_chem_comp.name
"1-[3-[3-(dimethylcarbamoyl)phenyl]phenyl]-5-[(1~{R},2~{R})-2-(1-methyl-1,2,3-triazol-4-yl)cyclopropyl]pyrazole-4-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H24 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-14
_chem_comp.pdbx_modified_date 2021-11-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 456.496
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5X9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7P5I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5X9 C1 C1 C 0 1 N N N N N N 9.457 63.448 28.355 9.264 -1.769 0.088 C1 5X9 1
5X9 C3 C2 C 0 1 N N N N N N 10.064 65.798 28.796 8.419 0.623 0.058 C3 5X9 2
5X9 C6 C3 C 0 1 Y N N N N N 11.684 64.923 31.083 5.791 -0.304 -0.388 C6 5X9 3
5X9 C7 C4 C 0 1 Y N N N N N 11.349 66.023 31.865 6.016 0.867 -1.115 C7 5X9 4
5X9 C8 C5 C 0 1 Y N N N N N 12.338 66.791 32.452 4.985 1.760 -1.324 C8 5X9 5
5X9 C10 C6 C 0 1 Y N N N N N 14.033 65.367 31.485 3.489 0.338 -0.089 C10 5X9 6
5X9 C11 C7 C 0 1 Y N N N N N 13.023 64.610 30.904 4.523 -0.568 0.126 C11 5X9 7
5X9 C12 C8 C 0 1 Y N N N N N 15.446 64.975 31.251 2.136 0.063 0.455 C12 5X9 8
5X9 C13 C9 C 0 1 Y N N N N N 16.317 64.660 32.293 1.898 -1.102 1.182 C13 5X9 9
5X9 C14 C10 C 0 1 Y N N N N N 17.634 64.296 32.028 0.638 -1.355 1.687 C14 5X9 10
5X9 C15 C11 C 0 1 Y N N N N N 18.091 64.243 30.718 -0.390 -0.456 1.475 C15 5X9 11
5X9 C16 C12 C 0 1 Y N N N N N 17.234 64.552 29.681 -0.161 0.708 0.752 C16 5X9 12
5X9 N18 N1 N 0 1 Y N N N N N 17.679 64.508 28.317 -1.205 1.620 0.544 N18 5X9 13
5X9 C21 C13 C 0 1 Y N N N N N 17.917 64.218 26.139 -3.191 2.488 0.186 C21 5X9 14
5X9 C22 C14 C 0 1 N N N N N N 17.729 63.864 24.705 -4.637 2.627 -0.056 C22 5X9 15
5X9 C25 C15 C 0 1 Y N N N N N 17.045 64.001 27.196 -2.498 1.304 0.349 C25 5X9 16
5X9 C26 C16 C 0 1 N N R N N N 15.718 63.373 27.207 -3.082 -0.085 0.314 C26 5X9 17
5X9 C27 C17 C 0 1 N N N N N N 15.435 62.211 28.115 -2.594 -1.029 -0.787 C27 5X9 18
5X9 C28 C18 C 0 1 N N R N N N 15.511 61.986 26.634 -4.002 -0.435 -0.857 C28 5X9 19
5X9 N2 N2 N 0 1 N N N N N N 10.152 64.402 29.211 8.156 -0.816 -0.012 N2 5X9 20
5X9 C4 C19 C 0 1 N N N N N N 10.711 64.017 30.397 6.894 -1.264 -0.169 C4 5X9 21
5X9 O5 O1 O 0 1 N N N N N N 10.430 62.943 30.907 6.663 -2.457 -0.130 O5 5X9 22
5X9 C9 C20 C 0 1 Y N N N N N 13.672 66.464 32.263 3.727 1.503 -0.816 C9 5X9 23
5X9 C17 C21 C 0 1 Y N N N N N 15.928 64.914 29.947 1.102 0.972 0.246 C17 5X9 24
5X9 N19 N3 N 0 1 Y N N N N N 18.908 65.034 28.010 -1.079 3.013 0.509 N19 5X9 25
5X9 C20 C22 C 0 1 Y N N N N N 19.036 64.853 26.704 -2.253 3.539 0.295 C20 5X9 26
5X9 O23 O2 O 0 1 N N N N N N 16.546 63.817 24.258 -5.164 3.842 -0.305 O23 5X9 27
5X9 O24 O3 O 0 1 N N N N N N 18.743 63.635 24.023 -5.355 1.647 -0.033 O24 5X9 28
5X9 C29 C23 C 0 1 Y N N N N N 14.305 61.620 25.844 -5.161 -1.357 -0.579 C29 5X9 29
5X9 C30 C24 C 0 1 Y N N N N N 13.744 62.194 24.748 -5.134 -2.711 -0.568 C30 5X9 30
5X9 N31 N4 N 0 1 Y N N N N N 12.678 61.434 24.476 -6.392 -3.110 -0.268 N31 5X9 31
5X9 C32 C25 C 0 1 N N N N N N 11.712 61.597 23.396 -6.845 -4.498 -0.143 C32 5X9 32
5X9 N33 N5 N 0 1 Y N N N N N 12.545 60.418 25.342 -7.121 -2.062 -0.110 N33 5X9 33
5X9 N34 N6 N 0 1 Y N N N N N 13.543 60.519 26.195 -6.417 -1.000 -0.289 N34 5X9 34
5X9 H38 H1 H 0 1 N N N N N N 9.587 62.432 28.756 9.423 -2.034 1.133 H38 5X9 35
5X9 H39 H2 H 0 1 N N N N N N 8.386 63.696 28.324 9.024 -2.667 -0.482 H39 5X9 36
5X9 H37 H3 H 0 1 N N N N N N 9.874 63.496 27.338 10.171 -1.316 -0.314 H37 5X9 37
5X9 H41 H4 H 0 1 N N N N N N 10.619 66.428 29.507 8.666 0.996 -0.936 H41 5X9 38
5X9 H42 H5 H 0 1 N N N N N N 10.497 65.910 27.791 7.532 1.137 0.429 H42 5X9 39
5X9 H40 H6 H 0 1 N N N N N N 9.009 66.109 28.777 9.255 0.807 0.733 H40 5X9 40
5X9 H43 H7 H 0 1 N N N N N N 10.311 66.279 32.015 6.998 1.074 -1.514 H43 5X9 41
5X9 H44 H8 H 0 1 N N N N N N 12.071 67.645 33.057 5.163 2.665 -1.887 H44 5X9 42
5X9 H46 H9 H 0 1 N N N N N N 13.288 63.756 30.298 4.344 -1.472 0.689 H46 5X9 43
5X9 H47 H10 H 0 1 N N N N N N 15.967 64.699 33.314 2.699 -1.806 1.350 H47 5X9 44
5X9 H48 H11 H 0 1 N N N N N N 18.301 64.055 32.842 0.456 -2.259 2.250 H48 5X9 45
5X9 H49 H12 H 0 1 N N N N N N 19.113 63.961 30.511 -1.373 -0.659 1.872 H49 5X9 46
5X9 H35 H13 H 0 1 N N N N N N 14.871 64.059 27.059 -3.313 -0.522 1.286 H35 5X9 47
5X9 H52 H14 H 0 1 N N N N N N 14.466 62.142 28.631 -1.851 -0.645 -1.486 H52 5X9 48
5X9 H53 H15 H 0 1 N N N N N N 16.228 61.821 28.770 -2.505 -2.087 -0.540 H53 5X9 49
5X9 H36 H16 H 0 1 N N N N N N 16.439 61.499 26.299 -4.186 0.339 -1.602 H36 5X9 50
5X9 H45 H17 H 0 1 N N N N N N 14.440 67.067 32.724 2.924 2.206 -0.983 H45 5X9 51
5X9 H50 H18 H 0 1 N N N N N N 15.268 65.154 29.127 1.282 1.877 -0.316 H50 5X9 52
5X9 H51 H19 H 0 1 N N N N N N 19.903 65.159 26.137 -2.470 4.594 0.215 H51 5X9 53
5X9 H1 H20 H 0 1 N N N N N N 16.564 63.583 23.337 -6.118 3.884 -0.458 H1 5X9 54
5X9 H54 H21 H 0 1 N N N N N N 14.084 63.070 24.215 -4.281 -3.344 -0.761 H54 5X9 55
5X9 H56 H22 H 0 1 N N N N N N 10.957 60.799 23.455 -6.723 -4.829 0.888 H56 5X9 56
5X9 H57 H23 H 0 1 N N N N N N 11.219 62.576 23.490 -7.896 -4.563 -0.424 H57 5X9 57
5X9 H55 H24 H 0 1 N N N N N N 12.231 61.539 22.428 -6.253 -5.134 -0.802 H55 5X9 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5X9 C32 N31 SING N N 1
5X9 O24 C22 DOUB N N 2
5X9 O23 C22 SING N N 3
5X9 N31 C30 SING Y N 4
5X9 N31 N33 SING Y N 5
5X9 C22 C21 SING N N 6
5X9 C30 C29 DOUB Y N 7
5X9 N33 N34 DOUB Y N 8
5X9 C29 N34 SING Y N 9
5X9 C29 C28 SING N N 10
5X9 C21 C20 SING Y N 11
5X9 C21 C25 DOUB Y N 12
5X9 C28 C26 SING N N 13
5X9 C28 C27 SING N N 14
5X9 C20 N19 DOUB Y N 15
5X9 C25 C26 SING N N 16
5X9 C25 N18 SING Y N 17
5X9 C26 C27 SING N N 18
5X9 N19 N18 SING Y N 19
5X9 N18 C16 SING N N 20
5X9 C1 N2 SING N N 21
5X9 C3 N2 SING N N 22
5X9 N2 C4 SING N N 23
5X9 C16 C17 DOUB Y N 24
5X9 C16 C15 SING Y N 25
5X9 C17 C12 SING Y N 26
5X9 C4 O5 DOUB N N 27
5X9 C4 C6 SING N N 28
5X9 C15 C14 DOUB Y N 29
5X9 C11 C6 DOUB Y N 30
5X9 C11 C10 SING Y N 31
5X9 C6 C7 SING Y N 32
5X9 C12 C10 SING N N 33
5X9 C12 C13 DOUB Y N 34
5X9 C10 C9 DOUB Y N 35
5X9 C7 C8 DOUB Y N 36
5X9 C14 C13 SING Y N 37
5X9 C9 C8 SING Y N 38
5X9 C1 H38 SING N N 39
5X9 C1 H39 SING N N 40
5X9 C1 H37 SING N N 41
5X9 C3 H41 SING N N 42
5X9 C3 H42 SING N N 43
5X9 C3 H40 SING N N 44
5X9 C7 H43 SING N N 45
5X9 C8 H44 SING N N 46
5X9 C11 H46 SING N N 47
5X9 C13 H47 SING N N 48
5X9 C14 H48 SING N N 49
5X9 C15 H49 SING N N 50
5X9 C26 H35 SING N N 51
5X9 C27 H52 SING N N 52
5X9 C27 H53 SING N N 53
5X9 C28 H36 SING N N 54
5X9 C9 H45 SING N N 55
5X9 C17 H50 SING N N 56
5X9 C20 H51 SING N N 57
5X9 O23 H1 SING N N 58
5X9 C30 H54 SING N N 59
5X9 C32 H56 SING N N 60
5X9 C32 H57 SING N N 61
5X9 C32 H55 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5X9 InChI InChI 1.03 InChI=1S/C25H24N6O3/c1-29(2)24(32)17-8-4-6-15(10-17)16-7-5-9-18(11-16)31-23(21(13-26-31)25(33)34)20-12-19(20)22-14-30(3)28-27-22/h4-11,13-14,19-20H,12H2,1-3H3,(H,33,34)/t19-,20-/m1/s1
5X9 InChIKey InChI 1.03 RSPIKPFHLPIDKV-WOJBJXKFSA-N
5X9 SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)c1cccc(c1)c2cccc(c2)n3ncc(C(O)=O)c3[C@@H]4C[C@H]4c5cn(C)nn5
5X9 SMILES CACTVS 3.385 CN(C)C(=O)c1cccc(c1)c2cccc(c2)n3ncc(C(O)=O)c3[CH]4C[CH]4c5cn(C)nn5
5X9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cn1cc(nn1)[C@@H]2C[C@H]2c3c(cnn3c4cccc(c4)c5cccc(c5)C(=O)N(C)C)C(=O)O
5X9 SMILES "OpenEye OEToolkits" 2.0.7 Cn1cc(nn1)C2CC2c3c(cnn3c4cccc(c4)c5cccc(c5)C(=O)N(C)C)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id 5X9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"1-[3-[3-(dimethylcarbamoyl)phenyl]phenyl]-5-[(1~{R},2~{R})-2-(1-methyl-1,2,3-triazol-4-yl)cyclopropyl]pyrazole-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5X9 'Create component' 2021-07-14 PDBE
5X9 'Initial release' 2021-11-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5X9 C1 C 3.000 -3.197 1
5X9 C3 C 4.299 -5.447 2
5X9 C6 C 6.897 -3.947 3
5X9 C7 C 6.897 -5.447 4
5X9 C8 C 8.196 -6.197 5
5X9 C10 C 9.495 -3.947 6
5X9 C11 C 8.196 -3.197 7
5X9 C12 C 10.794 -3.197 8
5X9 C13 C 12.093 -3.947 9
5X9 C14 C 13.392 -3.197 10
5X9 C15 C 13.392 -1.697 11
5X9 C16 C 12.093 -0.947 12
5X9 N18 N 12.093 0.553 13
5X9 C21 C 12.843 2.861 14
5X9 C22 C 13.725 4.075 15
5X9 C25 C 13.307 1.435 16
5X9 C26 C 14.733 0.971 17
5X9 C27 C 16.201 1.283 18
5X9 C28 C 15.737 -0.144 19
5X9 N2 N 4.299 -3.947 20
5X9 C4 C 5.598 -3.197 21
5X9 O5 O 5.598 -1.697 22
5X9 C9 C 9.495 -5.447 23
5X9 C17 C 10.794 -1.697 24
5X9 N19 N 10.880 1.435 25
5X9 C20 C 11.343 2.861 26
5X9 O23 O 13.115 5.445 27
5X9 O24 O 15.217 3.918 28
5X9 C29 C 16.049 -1.611 29
5X9 C30 C 15.045 -2.726 30
5X9 N31 N 15.795 -4.025 31
5X9 C32 C 15.185 -5.395 32
5X9 N33 N 17.262 -3.713 33
5X9 N34 N 17.419 -2.221 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5X9 C32 N31 SINGLE NONE 1
5X9 O24 C22 DOUBLE NONE 2
5X9 O23 C22 SINGLE NONE 3
5X9 N31 C30 SINGLE NONE 4
5X9 N31 N33 SINGLE NONE 5
5X9 C22 C21 SINGLE NONE 6
5X9 C30 C29 DOUBLE NONE 7
5X9 N33 N34 DOUBLE NONE 8
5X9 C29 N34 SINGLE NONE 9
5X9 C28 C29 SINGLE BEGINWEDGE 10
5X9 C21 C20 SINGLE NONE 11
5X9 C21 C25 DOUBLE NONE 12
5X9 C28 C26 SINGLE NONE 13
5X9 C28 C27 SINGLE NONE 14
5X9 C20 N19 DOUBLE NONE 15
5X9 C26 C25 SINGLE BEGINDASH 16
5X9 C25 N18 SINGLE NONE 17
5X9 C26 C27 SINGLE NONE 18
5X9 N19 N18 SINGLE NONE 19
5X9 N18 C16 SINGLE NONE 20
5X9 C1 N2 SINGLE NONE 21
5X9 C3 N2 SINGLE NONE 22
5X9 N2 C4 SINGLE NONE 23
5X9 C16 C17 DOUBLE NONE 24
5X9 C16 C15 SINGLE NONE 25
5X9 C17 C12 SINGLE NONE 26
5X9 C4 O5 DOUBLE NONE 27
5X9 C4 C6 SINGLE NONE 28
5X9 C15 C14 DOUBLE NONE 29
5X9 C11 C6 DOUBLE NONE 30
5X9 C11 C10 SINGLE NONE 31
5X9 C6 C7 SINGLE NONE 32
5X9 C12 C10 SINGLE NONE 33
5X9 C12 C13 DOUBLE NONE 34
5X9 C10 C9 DOUBLE NONE 35
5X9 C7 C8 DOUBLE NONE 36
5X9 C14 C13 SINGLE NONE 37
5X9 C9 C8 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5X9 MurckoScaffold S1 scaffold 'c1ccc(-c2cccc(-n3nccc3[C@@H]3C[C@H]3c3c[nH]nn3)c2)cc1' InChI=1S/C20H17N5/c1-2-5-14(6-3-1)15-7-4-8-16(11-15)25-20(9-10-22-25)18-12-17(18)19-13-21-24-23-19/h1-11,13,17-18H,12H2,(H,21,23,24)/t17-,18-/m1/s1 ZXHLDZGUPBQBHX-QZTJIDSGSA-N
5X9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5X9 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
5X9 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5X9 pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5X9 C6 S1 1
5X9 C7 S1 1
5X9 C8 S1 1
5X9 C10 S1 1
5X9 C11 S1 1
5X9 C12 S1 1
5X9 C13 S1 1
5X9 C14 S1 1
5X9 C15 S1 1
5X9 C16 S1 1
5X9 N18 S1 1
5X9 C21 S1 1
5X9 C25 S1 1
5X9 C26 S1 1
5X9 C27 S1 1
5X9 C28 S1 1
5X9 C9 S1 1
5X9 C17 S1 1
5X9 N19 S1 1
5X9 C20 S1 1
5X9 C29 S1 1
5X9 C30 S1 1
5X9 N31 S1 1
5X9 N33 S1 1
5X9 N34 S1 1
5X9 N2 F1 1
5X9 C4 F1 1
5X9 O5 F1 1
5X9 C6 F1 1
5X9 C26 F2 1
5X9 C28 F2 1
5X9 C27 F2 1
5X9 C6 F3 1
5X9 C11 F3 1
5X9 C10 F3 1
5X9 C9 F3 1
5X9 C8 F3 1
5X9 C7 F3 1
5X9 C12 F3 2
5X9 C17 F3 2
5X9 C16 F3 2
5X9 C15 F3 2
5X9 C14 F3 2
5X9 C13 F3 2
5X9 C25 F4 1
5X9 C21 F4 1
5X9 C20 F4 1
5X9 N19 F4 1
5X9 N18 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5X9
_pdbe_chem_comp_rdkit_properties.exactmw 456.191
_pdbe_chem_comp_rdkit_properties.amw 456.506
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.240
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 229.602
_pdbe_chem_comp_rdkit_properties.tpsa 106.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.550
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.032
_pdbe_chem_comp_rdkit_properties.chi0v 16.408
_pdbe_chem_comp_rdkit_properties.chi1v 8.975
_pdbe_chem_comp_rdkit_properties.chi2v 4.387
_pdbe_chem_comp_rdkit_properties.chi3v 4.387
_pdbe_chem_comp_rdkit_properties.chi4v 2.885
_pdbe_chem_comp_rdkit_properties.chi0n 40.408
_pdbe_chem_comp_rdkit_properties.chi1n 20.883
_pdbe_chem_comp_rdkit_properties.chi2n 4.387
_pdbe_chem_comp_rdkit_properties.chi3n 4.387
_pdbe_chem_comp_rdkit_properties.chi4n 2.885
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.270
_pdbe_chem_comp_rdkit_properties.kappa1 7.363
_pdbe_chem_comp_rdkit_properties.kappa2 8.256
_pdbe_chem_comp_rdkit_properties.kappa3 3.851
_pdbe_chem_comp_rdkit_properties.Phi 1.788
#
_pdbe_chem_comp_external_mappings.comp_id 5X9
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 5X9
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5X9 C1 -2.498 7.209 -0.787 ETKDGv3 1
5X9 C3 -1.701 5.529 0.922 ETKDGv3 2
5X9 C6 -2.225 3.452 -1.303 ETKDGv3 3
5X9 C7 -3.282 3.050 -0.343 ETKDGv3 4
5X9 C8 -3.559 1.758 -0.145 ETKDGv3 5
5X9 C10 -1.876 1.059 -1.782 ETKDGv3 6
5X9 C11 -1.572 2.500 -1.996 ETKDGv3 7
5X9 C12 -1.135 0.017 -2.537 ETKDGv3 8
5X9 C13 -0.848 0.187 -3.841 ETKDGv3 9
5X9 C14 -0.111 -0.853 -4.585 ETKDGv3 10
5X9 C15 0.291 -1.967 -3.965 ETKDGv3 11
5X9 C16 0.011 -2.163 -2.524 ETKDGv3 12
5X9 N18 0.455 -3.365 -1.876 ETKDGv3 13
5X9 C21 1.107 -4.858 -0.345 ETKDGv3 14
5X9 C22 1.539 -5.558 0.877 ETKDGv3 15
5X9 C25 0.919 -3.551 -0.536 ETKDGv3 16
5X9 C26 1.196 -2.440 0.446 ETKDGv3 17
5X9 C27 2.094 -1.342 -0.119 ETKDGv3 18
5X9 C28 2.645 -2.309 0.914 ETKDGv3 19
5X9 N2 -2.052 5.854 -0.463 ETKDGv3 20
5X9 C4 -1.917 4.885 -1.520 ETKDGv3 21
5X9 O5 -1.544 5.268 -2.663 ETKDGv3 22
5X9 C9 -2.823 0.718 -0.889 ETKDGv3 23
5X9 C17 -0.689 -1.228 -1.856 ETKDGv3 24
5X9 N19 0.422 -4.620 -2.492 ETKDGv3 25
5X9 C20 0.793 -5.502 -1.624 ETKDGv3 26
5X9 O23 1.628 -4.886 2.090 ETKDGv3 27
5X9 O24 1.808 -6.788 0.827 ETKDGv3 28
5X9 C29 2.858 -1.661 2.249 ETKDGv3 29
5X9 C30 2.220 -1.941 3.376 ETKDGv3 30
5X9 N31 2.805 -1.131 4.382 ETKDGv3 31
5X9 C32 2.734 -1.372 5.814 ETKDGv3 32
5X9 N33 3.843 -0.433 3.758 ETKDGv3 33
5X9 N34 3.888 -0.710 2.518 ETKDGv3 34
5X9 H38 -2.590 7.830 0.130 ETKDGv3 35
5X9 H39 -3.491 7.167 -1.282 ETKDGv3 36
5X9 H37 -1.768 7.694 -1.469 ETKDGv3 37
5X9 H41 -0.988 6.284 1.315 ETKDGv3 38
5X9 H42 -2.616 5.533 1.551 ETKDGv3 39
5X9 H40 -1.213 4.535 0.993 ETKDGv3 40
5X9 H43 -3.850 3.801 0.191 ETKDGv3 41
5X9 H44 -4.335 1.470 0.553 ETKDGv3 42
5X9 H46 -0.791 2.777 -2.693 ETKDGv3 43
5X9 H47 -1.172 1.073 -4.373 ETKDGv3 44
5X9 H48 0.102 -0.711 -5.637 ETKDGv3 45
5X9 H49 0.836 -2.722 -4.518 ETKDGv3 46
5X9 H35 0.396 -2.090 1.133 ETKDGv3 47
5X9 H52 2.495 -1.510 -1.141 ETKDGv3 48
5X9 H53 1.839 -0.324 0.248 ETKDGv3 49
5X9 H36 3.393 -3.030 0.520 ETKDGv3 50
5X9 H45 -3.083 -0.320 -0.720 ETKDGv3 51
5X9 H50 -0.935 -1.378 -0.815 ETKDGv3 52
5X9 H51 0.853 -6.561 -1.838 ETKDGv3 53
5X9 H1 1.919 -5.368 2.932 ETKDGv3 54
5X9 H54 1.429 -2.663 3.524 ETKDGv3 55
5X9 H56 3.023 -0.451 6.363 ETKDGv3 56
5X9 H57 3.426 -2.195 6.088 ETKDGv3 57
5X9 H55 1.698 -1.652 6.098 ETKDGv3 58
#