data_5Y4
#
_chem_comp.id 5Y4
_chem_comp.name
~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]ethanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H29 N9 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-03
_chem_comp.pdbx_modified_date 2016-02-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 447.536
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5Y4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5H8G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5Y4 C1 C1 C 0 1 N N N N N N 10.959 -1.089 28.604 -2.871 3.786 1.073 C1 5Y4 1
5Y4 C2 C2 C 0 1 Y N N N N N 10.488 -1.587 31.059 -2.265 1.909 -0.260 C2 5Y4 2
5Y4 C3 C3 C 0 1 Y N N N N N 10.555 -2.978 31.093 -0.915 2.203 -0.150 C3 5Y4 3
5Y4 N6 N1 N 0 1 Y N N N N N 11.978 -8.757 28.693 4.728 -2.631 0.532 N6 5Y4 4
5Y4 C7 C4 C 0 1 Y N N N N N 9.996 -0.892 32.174 -2.669 0.697 -0.820 C7 5Y4 5
5Y4 C8 C5 C 0 1 N N N N N N 8.992 1.251 31.337 -4.432 0.276 -2.341 C8 5Y4 6
5Y4 C9 C6 C 0 1 N N N N N N 10.175 1.188 33.552 -4.366 -0.824 -0.185 C9 5Y4 7
5Y4 C10 C7 C 0 1 N N N N N N 10.904 2.571 33.502 -5.887 -0.984 -0.121 C10 5Y4 8
5Y4 C11 C8 C 0 1 N N N N N N 12.440 4.035 32.357 -7.659 -2.268 0.914 C11 5Y4 9
5Y4 C12 C9 C 0 1 N N N N N N 13.262 2.049 33.400 -5.773 -3.402 -0.096 C12 5Y4 10
5Y4 C13 C10 C 0 1 Y N N N N N 10.614 -6.035 31.359 2.306 0.574 -0.239 C13 5Y4 11
5Y4 C14 C11 C 0 1 Y N N N N N 10.664 -7.351 31.815 3.680 0.850 -0.250 C14 5Y4 12
5Y4 C15 C12 C 0 1 Y N N N N N 11.018 -8.391 30.955 4.565 -0.162 -0.003 C15 5Y4 13
5Y4 C16 C13 C 0 1 Y N N N N N 11.456 -6.637 29.314 2.737 -1.645 0.252 C16 5Y4 14
5Y4 C19 C14 C 0 1 N N N N N N 12.096 -5.425 27.157 1.304 -3.702 0.643 C19 5Y4 15
5Y4 C20 C15 C 0 1 N N N N N N 10.814 -10.260 32.634 6.427 1.412 -0.354 C20 5Y4 16
5Y4 C21 C16 C 0 1 N N N N N N 9.412 -10.477 33.030 7.531 1.999 0.527 C21 5Y4 17
5Y4 C22 C17 C 0 1 N N N N N N 10.289 -11.632 32.748 7.859 1.508 -0.884 C22 5Y4 18
5Y4 N7 N2 N 0 1 N N N N N N 12.267 -4.560 26.425 0.312 -4.250 0.726 N7 5Y4 19
5Y4 C17 C18 C 0 1 Y N N N N N 11.940 -6.577 27.998 2.554 -3.012 0.538 C17 5Y4 20
5Y4 C18 C19 C 0 1 Y N N N N N 12.246 -7.908 27.684 3.837 -3.570 0.702 C18 5Y4 21
5Y4 N4 N3 N 0 1 Y N N N N N 11.484 -7.977 29.688 4.085 -1.421 0.250 N4 5Y4 22
5Y4 N8 N4 N 0 1 N N N N N N 11.097 -9.740 31.299 5.922 0.081 -0.008 N8 5Y4 23
5Y4 N5 N5 N 0 1 Y N N N N N 11.012 -5.668 30.129 1.877 -0.655 0.009 N5 5Y4 24
5Y4 N3 N6 N 0 1 N N N N N N 10.251 -5.081 32.294 1.396 1.587 -0.487 N3 5Y4 25
5Y4 C4 C20 C 0 1 Y N N N N N 10.160 -3.676 32.226 0.031 1.291 -0.598 C4 5Y4 26
5Y4 C5 C21 C 0 1 Y N N N N N 9.677 -2.982 33.329 -0.374 0.085 -1.154 C5 5Y4 27
5Y4 C6 C22 C 0 1 Y N N N N N 9.626 -1.601 33.317 -1.720 -0.211 -1.265 C6 5Y4 28
5Y4 N N7 N 0 1 N N N N N N 10.950 -0.837 29.941 -3.222 2.825 0.196 N 5Y4 29
5Y4 O O1 O 0 1 N N N N N N 11.528 -0.365 27.800 -1.752 3.801 1.541 O 5Y4 30
5Y4 C C23 C 0 1 N N N N N N 10.070 -2.216 28.155 -3.867 4.846 1.467 C 5Y4 31
5Y4 N1 N8 N 0 1 N N N N N N 9.971 0.577 32.187 -4.033 0.396 -0.932 N1 5Y4 32
5Y4 N2 N9 N 0 1 N N N N N N 12.132 2.647 32.696 -6.220 -2.204 0.626 N2 5Y4 33
5Y4 H1 H1 H 0 1 N N N N N N 10.917 -3.518 30.231 -0.600 3.141 0.282 H1 5Y4 34
5Y4 H2 H2 H 0 1 N N N N N N 9.093 2.340 31.453 -3.858 -0.521 -2.814 H2 5Y4 35
5Y4 H3 H3 H 0 1 N N N N N N 9.168 0.976 30.287 -5.495 0.043 -2.399 H3 5Y4 36
5Y4 H4 H4 H 0 1 N N N N N N 7.978 0.944 31.632 -4.238 1.218 -2.855 H4 5Y4 37
5Y4 H5 H5 H 0 1 N N N N N N 9.191 1.328 34.024 -3.966 -0.752 0.826 H5 5Y4 38
5Y4 H6 H6 H 0 1 N N N N N N 10.778 0.496 34.159 -3.931 -1.688 -0.687 H6 5Y4 39
5Y4 H7 H7 H 0 1 N N N N N N 11.166 2.846 34.534 -6.322 -0.120 0.382 H7 5Y4 40
5Y4 H8 H8 H 0 1 N N N N N N 10.194 3.306 33.096 -6.287 -1.056 -1.132 H8 5Y4 41
5Y4 H9 H9 H 0 1 N N N N N N 11.586 4.482 31.827 -7.878 -3.181 1.468 H9 5Y4 42
5Y4 H10 H10 H 0 1 N N N N N N 12.637 4.602 33.279 -7.950 -1.403 1.510 H10 5Y4 43
5Y4 H11 H11 H 0 1 N N N N N N 13.330 4.066 31.711 -8.217 -2.269 -0.022 H11 5Y4 44
5Y4 H12 H12 H 0 1 N N N N N N 13.026 1.005 33.653 -6.315 -3.481 -1.039 H12 5Y4 45
5Y4 H13 H13 H 0 1 N N N N N N 14.152 2.077 32.755 -4.704 -3.328 -0.296 H13 5Y4 46
5Y4 H14 H14 H 0 1 N N N N N N 13.460 2.614 34.323 -5.969 -4.286 0.510 H14 5Y4 47
5Y4 H15 H15 H 0 1 N N N N N N 10.426 -7.568 32.846 4.036 1.850 -0.450 H15 5Y4 48
5Y4 H16 H16 H 0 1 N N N N N N 11.496 -9.938 33.435 5.691 2.102 -0.766 H16 5Y4 49
5Y4 H17 H17 H 0 1 N N N N N N 9.093 -10.267 34.062 7.521 3.076 0.696 H17 5Y4 50
5Y4 H18 H18 H 0 1 N N N N N N 8.598 -10.222 32.335 7.881 1.396 1.365 H18 5Y4 51
5Y4 H19 H19 H 0 1 N N N N N N 10.129 -12.237 31.843 8.425 0.581 -0.975 H19 5Y4 52
5Y4 H20 H20 H 0 1 N N N N N N 10.623 -12.283 33.570 8.065 2.261 -1.644 H20 5Y4 53
5Y4 H21 H21 H 0 1 N N N N N N 12.654 -8.219 26.733 4.049 -4.604 0.931 H21 5Y4 54
5Y4 H22 H22 H 0 1 N N N N N N 10.467 -10.214 30.684 6.542 -0.630 0.217 H22 5Y4 55
5Y4 H23 H23 H 0 1 N N N N N N 10.007 -5.460 33.187 1.703 2.502 -0.585 H23 5Y4 56
5Y4 H24 H24 H 0 1 N N N N N N 9.340 -3.525 34.200 0.364 -0.624 -1.501 H24 5Y4 57
5Y4 H25 H25 H 0 1 N N N N N N 9.298 -1.068 34.197 -2.032 -1.149 -1.698 H25 5Y4 58
5Y4 H26 H26 H 0 1 N N N N N N 11.345 0.048 30.186 -4.138 2.768 -0.120 H26 5Y4 59
5Y4 H27 H27 H 0 1 N N N N N N 10.043 -2.247 27.056 -4.429 4.511 2.339 H27 5Y4 60
5Y4 H28 H28 H 0 1 N N N N N N 10.464 -3.169 28.539 -3.339 5.769 1.708 H28 5Y4 61
5Y4 H29 H29 H 0 1 N N N N N N 9.053 -2.057 28.542 -4.553 5.026 0.640 H29 5Y4 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5Y4 N7 C19 TRIP N N 1
5Y4 C19 C17 SING N N 2
5Y4 C18 C17 SING Y N 3
5Y4 C18 N6 DOUB Y N 4
5Y4 O C1 DOUB N N 5
5Y4 C17 C16 DOUB Y N 6
5Y4 C C1 SING N N 7
5Y4 C1 N SING N N 8
5Y4 N6 N4 SING Y N 9
5Y4 C16 N4 SING Y N 10
5Y4 C16 N5 SING Y N 11
5Y4 N4 C15 SING Y N 12
5Y4 N C2 SING N N 13
5Y4 N5 C13 DOUB Y N 14
5Y4 C15 N8 SING N N 15
5Y4 C15 C14 DOUB Y N 16
5Y4 C2 C3 DOUB Y N 17
5Y4 C2 C7 SING Y N 18
5Y4 C3 C4 SING Y N 19
5Y4 N8 C20 SING N N 20
5Y4 C8 N1 SING N N 21
5Y4 C13 C14 SING Y N 22
5Y4 C13 N3 SING N N 23
5Y4 C7 N1 SING N N 24
5Y4 C7 C6 DOUB Y N 25
5Y4 N1 C9 SING N N 26
5Y4 C4 N3 SING N N 27
5Y4 C4 C5 DOUB Y N 28
5Y4 C11 N2 SING N N 29
5Y4 C20 C22 SING N N 30
5Y4 C20 C21 SING N N 31
5Y4 N2 C12 SING N N 32
5Y4 N2 C10 SING N N 33
5Y4 C22 C21 SING N N 34
5Y4 C6 C5 SING Y N 35
5Y4 C10 C9 SING N N 36
5Y4 C3 H1 SING N N 37
5Y4 C8 H2 SING N N 38
5Y4 C8 H3 SING N N 39
5Y4 C8 H4 SING N N 40
5Y4 C9 H5 SING N N 41
5Y4 C9 H6 SING N N 42
5Y4 C10 H7 SING N N 43
5Y4 C10 H8 SING N N 44
5Y4 C11 H9 SING N N 45
5Y4 C11 H10 SING N N 46
5Y4 C11 H11 SING N N 47
5Y4 C12 H12 SING N N 48
5Y4 C12 H13 SING N N 49
5Y4 C12 H14 SING N N 50
5Y4 C14 H15 SING N N 51
5Y4 C20 H16 SING N N 52
5Y4 C21 H17 SING N N 53
5Y4 C21 H18 SING N N 54
5Y4 C22 H19 SING N N 55
5Y4 C22 H20 SING N N 56
5Y4 C18 H21 SING N N 57
5Y4 N8 H22 SING N N 58
5Y4 N3 H23 SING N N 59
5Y4 C5 H24 SING N N 60
5Y4 C6 H25 SING N N 61
5Y4 N H26 SING N N 62
5Y4 C H27 SING N N 63
5Y4 C H28 SING N N 64
5Y4 C H29 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5Y4 InChI InChI 1.03 InChI=1S/C23H29N9O/c1-15(33)26-19-11-18(7-8-20(19)31(4)10-9-30(2)3)27-21-12-22(28-17-5-6-17)32-23(29-21)16(13-24)14-25-32/h7-8,11-12,14,17,28H,5-6,9-10H2,1-4H3,(H,26,33)(H,27,29)
5Y4 InChIKey InChI 1.03 SRABOMKMQRYXIK-UHFFFAOYSA-N
5Y4 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCN(C)c1ccc(Nc2cc(NC3CC3)n4ncc(C#N)c4n2)cc1NC(C)=O"
5Y4 SMILES CACTVS 3.385 "CN(C)CCN(C)c1ccc(Nc2cc(NC3CC3)n4ncc(C#N)c4n2)cc1NC(C)=O"
5Y4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(=O)Nc1cc(ccc1N(C)CCN(C)C)Nc2cc(n3c(n2)c(cn3)C#N)NC4CC4"
5Y4 SMILES "OpenEye OEToolkits" 2.0.4 "CC(=O)Nc1cc(ccc1N(C)CCN(C)C)Nc2cc(n3c(n2)c(cn3)C#N)NC4CC4"
#
_pdbx_chem_comp_identifier.comp_id 5Y4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier
~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5Y4 'Create component' 2016-01-03 RCSB
5Y4 'Initial release' 2016-02-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5Y4 C1 C 10.794 1.774 1
5Y4 C2 C 8.196 1.774 2
5Y4 C3 C 8.196 0.275 3
5Y4 N6 N 12.214 -4.683 4
5Y4 C7 C 6.897 2.525 5
5Y4 C8 C 8.196 4.774 6
5Y4 C9 C 5.598 4.774 7
5Y4 C10 C 5.598 6.274 8
5Y4 C11 C 4.299 8.524 9
5Y4 C12 C 3.000 6.274 10
5Y4 C13 C 8.196 -2.725 11
5Y4 C14 C 8.196 -4.226 12
5Y4 C15 C 9.495 -4.976 13
5Y4 C16 C 10.794 -2.725 14
5Y4 C19 C 12.680 -0.843 15
5Y4 C20 C 8.196 -7.226 16
5Y4 C21 C 7.446 -8.524 17
5Y4 C22 C 6.696 -7.226 18
5Y4 N7 N 13.146 0.583 19
5Y4 C17 C 12.214 -2.268 20
5Y4 C18 C 13.089 -3.475 21
5Y4 N4 N 10.794 -4.226 22
5Y4 N8 N 9.495 -6.476 23
5Y4 N5 N 9.495 -1.976 24
5Y4 N3 N 6.897 -1.976 25
5Y4 C4 C 6.897 -0.475 26
5Y4 C5 C 5.598 0.275 27
5Y4 C6 C 5.598 1.774 28
5Y4 N N 9.495 2.525 29
5Y4 O O 10.794 0.275 30
5Y4 C C 12.093 2.525 31
5Y4 N1 N 6.897 4.024 32
5Y4 N2 N 4.299 7.024 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5Y4 N7 C19 TRIPLE NONE 1
5Y4 C19 C17 SINGLE NONE 2
5Y4 C18 C17 SINGLE NONE 3
5Y4 C18 N6 DOUBLE NONE 4
5Y4 O C1 DOUBLE NONE 5
5Y4 C17 C16 DOUBLE NONE 6
5Y4 C C1 SINGLE NONE 7
5Y4 C1 N SINGLE NONE 8
5Y4 N6 N4 SINGLE NONE 9
5Y4 C16 N4 SINGLE NONE 10
5Y4 C16 N5 SINGLE NONE 11
5Y4 N4 C15 SINGLE NONE 12
5Y4 N C2 SINGLE NONE 13
5Y4 N5 C13 DOUBLE NONE 14
5Y4 C15 N8 SINGLE NONE 15
5Y4 C15 C14 DOUBLE NONE 16
5Y4 C2 C3 DOUBLE NONE 17
5Y4 C2 C7 SINGLE NONE 18
5Y4 C3 C4 SINGLE NONE 19
5Y4 N8 C20 SINGLE NONE 20
5Y4 C8 N1 SINGLE NONE 21
5Y4 C13 C14 SINGLE NONE 22
5Y4 C13 N3 SINGLE NONE 23
5Y4 C7 N1 SINGLE NONE 24
5Y4 C7 C6 DOUBLE NONE 25
5Y4 N1 C9 SINGLE NONE 26
5Y4 C4 N3 SINGLE NONE 27
5Y4 C4 C5 DOUBLE NONE 28
5Y4 C11 N2 SINGLE NONE 29
5Y4 C20 C22 SINGLE NONE 30
5Y4 C20 C21 SINGLE NONE 31
5Y4 N2 C12 SINGLE NONE 32
5Y4 N2 C10 SINGLE NONE 33
5Y4 C22 C21 SINGLE NONE 34
5Y4 C6 C5 SINGLE NONE 35
5Y4 C10 C9 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5Y4 MurckoScaffold S1 scaffold c1ccc(Nc2cc(NC3CC3)n3nccc3n2)cc1 InChI=1S/C15H15N5/c1-2-4-11(5-3-1)17-13-10-15(18-12-6-7-12)20-14(19-13)8-9-16-20/h1-5,8-10,12,18H,6-7H2,(H,17,19) ZSQPDZNAECPXAN-UHFFFAOYSA-N
5Y4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5Y4 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
5Y4 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5Y4 pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
5Y4 pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5Y4 C2 S1 1
5Y4 C3 S1 1
5Y4 N6 S1 1
5Y4 C7 S1 1
5Y4 C13 S1 1
5Y4 C14 S1 1
5Y4 C15 S1 1
5Y4 C16 S1 1
5Y4 C20 S1 1
5Y4 C21 S1 1
5Y4 C22 S1 1
5Y4 C17 S1 1
5Y4 C18 S1 1
5Y4 N4 S1 1
5Y4 N8 S1 1
5Y4 N5 S1 1
5Y4 N3 S1 1
5Y4 C4 S1 1
5Y4 C5 S1 1
5Y4 C6 S1 1
5Y4 N F1 1
5Y4 C1 F1 1
5Y4 O F1 1
5Y4 C F1 1
5Y4 C20 F2 1
5Y4 C22 F2 1
5Y4 C21 F2 1
5Y4 C2 F3 1
5Y4 C3 F3 1
5Y4 C4 F3 1
5Y4 C5 F3 1
5Y4 C6 F3 1
5Y4 C7 F3 1
5Y4 C16 F4 1
5Y4 C17 F4 1
5Y4 C18 F4 1
5Y4 N6 F4 1
5Y4 N4 F4 1
5Y4 C14 F5 1
5Y4 C15 F5 1
5Y4 N4 F5 1
5Y4 C16 F5 1
5Y4 N5 F5 1
5Y4 C13 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5Y4
_pdbe_chem_comp_rdkit_properties.exactmw 447.250
_pdbe_chem_comp_rdkit_properties.amw 447.547
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.391
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 233.665
_pdbe_chem_comp_rdkit_properties.tpsa 113.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.703
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.710
_pdbe_chem_comp_rdkit_properties.chi0v 15.933
_pdbe_chem_comp_rdkit_properties.chi1v 8.429
_pdbe_chem_comp_rdkit_properties.chi2v 3.577
_pdbe_chem_comp_rdkit_properties.chi3v 3.577
_pdbe_chem_comp_rdkit_properties.chi4v 2.271
_pdbe_chem_comp_rdkit_properties.chi0n 44.933
_pdbe_chem_comp_rdkit_properties.chi1n 22.771
_pdbe_chem_comp_rdkit_properties.chi2n 3.577
_pdbe_chem_comp_rdkit_properties.chi3n 3.577
_pdbe_chem_comp_rdkit_properties.chi4n 2.271
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.840
_pdbe_chem_comp_rdkit_properties.kappa1 6.182
_pdbe_chem_comp_rdkit_properties.kappa2 9.340
_pdbe_chem_comp_rdkit_properties.kappa3 5.325
_pdbe_chem_comp_rdkit_properties.Phi 1.750
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5Y4 UniChem ChEMBL CHEMBL3103191
5Y4 UniChem PDBe 5Y4
5Y4 UniChem ZINC ZINC000103228958
5Y4 UniChem SureChEMBL SCHEMBL15286453
5Y4 UniChem BindingDb 50172246
5Y4 UniChem PubChem 76321032
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5Y4 C1 -2.150 -3.355 -3.341 ETKDGv3 1
5Y4 C2 -0.750 -2.034 -1.727 ETKDGv3 2
5Y4 C3 0.582 -1.888 -1.653 ETKDGv3 3
5Y4 N6 5.833 2.254 2.451 ETKDGv3 4
5Y4 C7 -1.642 -0.923 -1.272 ETKDGv3 5
5Y4 C8 -3.599 -2.199 -0.366 ETKDGv3 6
5Y4 C9 -3.965 -0.411 -2.120 ETKDGv3 7
5Y4 C10 -4.359 0.983 -1.610 ETKDGv3 8
5Y4 C11 -6.264 0.552 -0.161 ETKDGv3 9
5Y4 C12 -4.659 2.237 0.440 ETKDGv3 10
5Y4 C13 3.353 0.292 -0.212 ETKDGv3 11
5Y4 C14 2.841 0.472 1.190 ETKDGv3 12
5Y4 C15 3.540 1.180 2.100 ETKDGv3 13
5Y4 C16 5.273 1.527 0.384 ETKDGv3 14
5Y4 C19 7.458 1.619 -0.757 ETKDGv3 15
5Y4 C20 3.691 2.179 4.436 ETKDGv3 16
5Y4 C21 4.733 1.443 5.260 ETKDGv3 17
5Y4 C22 3.384 1.785 5.872 ETKDGv3 18
5Y4 N7 8.192 1.419 -1.629 ETKDGv3 19
5Y4 C17 6.545 1.869 0.325 ETKDGv3 20
5Y4 C18 6.874 2.342 1.678 ETKDGv3 21
5Y4 N4 4.776 1.772 1.674 ETKDGv3 22
5Y4 N8 3.037 1.337 3.438 ETKDGv3 23
5Y4 N5 4.520 0.768 -0.560 ETKDGv3 24
5Y4 N3 2.612 -0.483 -1.167 ETKDGv3 25
5Y4 C4 1.182 -0.626 -1.166 ETKDGv3 26
5Y4 C5 0.375 0.386 -0.803 ETKDGv3 27
5Y4 C6 -1.090 0.217 -0.826 ETKDGv3 28
5Y4 N -1.291 -3.275 -2.197 ETKDGv3 29
5Y4 O -2.296 -2.360 -4.101 ETKDGv3 30
5Y4 C -2.810 -4.649 -3.689 ETKDGv3 31
5Y4 N1 -3.068 -1.109 -1.188 ETKDGv3 32
5Y4 N2 -4.841 0.930 -0.213 ETKDGv3 33
5Y4 H1 1.233 -2.697 -1.964 ETKDGv3 34
5Y4 H2 -3.897 -3.050 -1.013 ETKDGv3 35
5Y4 H3 -4.487 -1.849 0.200 ETKDGv3 36
5Y4 H4 -2.840 -2.547 0.367 ETKDGv3 37
5Y4 H5 -3.473 -0.302 -3.110 ETKDGv3 38
5Y4 H6 -4.884 -1.013 -2.291 ETKDGv3 39
5Y4 H7 -5.130 1.418 -2.287 ETKDGv3 40
5Y4 H8 -3.468 1.641 -1.704 ETKDGv3 41
5Y4 H9 -6.904 1.306 -0.672 ETKDGv3 42
5Y4 H10 -6.594 0.458 0.896 ETKDGv3 43
5Y4 H11 -6.424 -0.437 -0.637 ETKDGv3 44
5Y4 H12 -5.196 3.041 -0.112 ETKDGv3 45
5Y4 H13 -3.579 2.491 0.491 ETKDGv3 46
5Y4 H14 -5.033 2.202 1.486 ETKDGv3 47
5Y4 H15 1.911 0.002 1.481 ETKDGv3 48
5Y4 H16 3.849 3.258 4.222 ETKDGv3 49
5Y4 H17 4.864 0.368 5.010 ETKDGv3 50
5Y4 H18 5.569 2.083 5.612 ETKDGv3 51
5Y4 H19 2.722 0.903 6.010 ETKDGv3 52
5Y4 H20 3.422 2.623 6.599 ETKDGv3 53
5Y4 H21 7.845 2.674 2.020 ETKDGv3 54
5Y4 H22 2.111 0.915 3.680 ETKDGv3 55
5Y4 H23 3.151 -0.990 -1.905 ETKDGv3 56
5Y4 H24 0.785 1.337 -0.488 ETKDGv3 57
5Y4 H25 -1.705 1.010 -0.426 ETKDGv3 58
5Y4 H26 -0.936 -4.164 -1.778 ETKDGv3 59
5Y4 H27 -3.704 -4.467 -4.322 ETKDGv3 60
5Y4 H28 -3.131 -5.170 -2.762 ETKDGv3 61
5Y4 H29 -2.095 -5.292 -4.242 ETKDGv3 62
#