data_5ZG
#
_chem_comp.id 5ZG
_chem_comp.name ethyl-4-methylbenzylphosphonate
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H15 O3 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-21
_chem_comp.pdbx_modified_date 2022-07-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 214.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5ZG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7P85
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5ZG C1 C1 C 0 1 Y N N N N N 17.684 -31.060 -1.286 1.182 -0.060 -0.773 C1 5ZG 1
5ZG C2 C2 C 0 1 Y N N N N N 18.916 -30.480 -1.552 1.860 1.135 -0.626 C2 5ZG 2
5ZG C3 C3 C 0 1 Y N N N N N 20.041 -30.858 -0.842 3.161 1.140 -0.158 C3 5ZG 3
5ZG C4 C4 C 0 1 Y N N N N N 19.975 -31.772 0.198 3.783 -0.052 0.163 C4 5ZG 4
5ZG C5 C5 C 0 1 Y N N N N N 18.747 -32.343 0.469 3.105 -1.247 0.017 C5 5ZG 5
5ZG C6 C6 C 0 1 Y N N N N N 17.616 -31.979 -0.245 1.805 -1.252 -0.452 C6 5ZG 6
5ZG C7 C7 C 0 1 N N N N N N 16.444 -30.682 -2.068 -0.238 -0.064 -1.277 C7 5ZG 7
5ZG C8 C8 C 0 1 N N N N N N 21.219 -32.172 0.967 5.202 -0.047 0.673 C8 5ZG 8
5ZG C9 C9 C 0 1 N N N N N N 16.328 -34.331 -2.841 -4.027 -0.108 0.486 C9 5ZG 9
5ZG C10 C10 C 0 1 N N N N N N 15.630 -35.055 -1.760 -5.310 -0.241 -0.337 C10 5ZG 10
5ZG P P1 P 0 1 N N N N N N 16.197 -31.735 -3.487 -1.384 0.069 0.134 P 5ZG 11
5ZG O1 O1 O 0 1 N N N N N N 15.748 -33.059 -2.777 -2.900 -0.067 -0.391 O1 5ZG 12
5ZG O2 O2 O 0 1 N N N N N N 17.560 -31.730 -4.264 -1.191 1.498 0.849 O2 5ZG 13
5ZG O3 O3 O 0 1 N N N N N N 15.050 -31.380 -4.354 -1.100 -1.011 1.104 O3 5ZG 14
5ZG H1 H1 H 0 1 N N N N N N 18.997 -29.726 -2.321 1.373 2.066 -0.877 H1 5ZG 15
5ZG H2 H2 H 0 1 N N N N N N 20.997 -30.429 -1.105 3.691 2.074 -0.044 H2 5ZG 16
5ZG H3 H3 H 0 1 N N N N N N 18.667 -33.085 1.250 3.592 -2.178 0.268 H3 5ZG 17
5ZG H4 H4 H 0 1 N N N N N N 16.663 -32.418 0.012 1.276 -2.186 -0.567 H4 5ZG 18
5ZG H5 H5 H 0 1 N N N N N N 16.545 -29.642 -2.412 -0.388 0.782 -1.948 H5 5ZG 19
5ZG H6 H6 H 0 1 N N N N N N 15.569 -30.767 -1.407 -0.430 -0.993 -1.815 H6 5ZG 20
5ZG H7 H7 H 0 1 N N N N N N 21.342 -31.510 1.837 5.197 0.033 1.760 H7 5ZG 21
5ZG H8 H8 H 0 1 N N N N N N 21.119 -33.212 1.310 5.696 -0.973 0.379 H8 5ZG 22
5ZG H9 H9 H 0 1 N N N N N N 22.099 -32.084 0.312 5.738 0.802 0.248 H9 5ZG 23
5ZG H10 H10 H 0 1 N N N N N N 16.145 -34.803 -3.818 -4.065 0.810 1.072 H10 5ZG 24
5ZG H11 H11 H 0 1 N N N N N N 17.411 -34.284 -2.653 -3.935 -0.963 1.156 H11 5ZG 25
5ZG H12 H12 H 0 1 N N N N N N 16.005 -36.088 -1.708 -5.402 0.614 -1.007 H12 5ZG 26
5ZG H13 H13 H 0 1 N N N N N N 15.815 -34.549 -0.801 -5.272 -1.160 -0.923 H13 5ZG 27
5ZG H14 H14 H 0 1 N N N N N N 14.549 -35.067 -1.965 -6.170 -0.272 0.332 H14 5ZG 28
5ZG H15 H15 H 0 1 N N N N N N 17.407 -31.496 -5.172 -1.361 2.254 0.271 H15 5ZG 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5ZG O3 P DOUB N N 1
5ZG O2 P SING N N 2
5ZG P O1 SING N N 3
5ZG P C7 SING N N 4
5ZG C9 O1 SING N N 5
5ZG C9 C10 SING N N 6
5ZG C7 C1 SING N N 7
5ZG C2 C1 DOUB Y N 8
5ZG C2 C3 SING Y N 9
5ZG C1 C6 SING Y N 10
5ZG C3 C4 DOUB Y N 11
5ZG C6 C5 DOUB Y N 12
5ZG C4 C5 SING Y N 13
5ZG C4 C8 SING N N 14
5ZG C2 H1 SING N N 15
5ZG C3 H2 SING N N 16
5ZG C5 H3 SING N N 17
5ZG C6 H4 SING N N 18
5ZG C7 H5 SING N N 19
5ZG C7 H6 SING N N 20
5ZG C8 H7 SING N N 21
5ZG C8 H8 SING N N 22
5ZG C8 H9 SING N N 23
5ZG C9 H10 SING N N 24
5ZG C9 H11 SING N N 25
5ZG C10 H12 SING N N 26
5ZG C10 H13 SING N N 27
5ZG C10 H14 SING N N 28
5ZG O2 H15 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5ZG InChI InChI 1.03 InChI=1S/C10H15O3P/c1-3-13-14(11,12)8-10-6-4-9(2)5-7-10/h4-7H,3,8H2,1-2H3,(H,11,12)
5ZG InChIKey InChI 1.03 UGYWRBROZXWBSU-UHFFFAOYSA-N
5ZG SMILES_CANONICAL CACTVS 3.385 CCO[P](O)(=O)Cc1ccc(C)cc1
5ZG SMILES CACTVS 3.385 CCO[P](O)(=O)Cc1ccc(C)cc1
5ZG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCOP(=O)(Cc1ccc(cc1)C)O
5ZG SMILES "OpenEye OEToolkits" 2.0.7 CCOP(=O)(Cc1ccc(cc1)C)O
#
_pdbx_chem_comp_identifier.comp_id 5ZG
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "ethoxy-[(4-methylphenyl)methyl]phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5ZG 'Create component' 2021-07-21 PDBE
5ZG 'Initial release' 2022-08-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5ZG C1 C 4.299 -0.375 1
5ZG C2 C 3.000 -1.125 2
5ZG C3 C 3.000 -2.625 3
5ZG C4 C 4.299 -3.375 4
5ZG C5 C 5.598 -2.625 5
5ZG C6 C 5.598 -1.125 6
5ZG C7 C 4.299 1.125 7
5ZG C8 C 4.299 -4.875 8
5ZG C9 C 6.897 4.125 9
5ZG C10 C 8.196 4.875 10
5ZG P P 5.598 1.875 11
5ZG O1 O 6.897 2.625 12
5ZG O2 O 6.348 0.576 13
5ZG O3 O 4.848 3.174 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5ZG O3 P DOUBLE NONE 1
5ZG P O2 SINGLE BEGINWEDGE 2
5ZG P O1 SINGLE NONE 3
5ZG P C7 SINGLE NONE 4
5ZG C9 O1 SINGLE NONE 5
5ZG C9 C10 SINGLE NONE 6
5ZG C7 C1 SINGLE NONE 7
5ZG C2 C1 DOUBLE NONE 8
5ZG C2 C3 SINGLE NONE 9
5ZG C1 C6 SINGLE NONE 10
5ZG C3 C4 DOUBLE NONE 11
5ZG C6 C5 DOUBLE NONE 12
5ZG C4 C5 SINGLE NONE 13
5ZG C4 C8 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5ZG MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5ZG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5ZG C1 S1 1
5ZG C2 S1 1
5ZG C3 S1 1
5ZG C4 S1 1
5ZG C5 S1 1
5ZG C6 S1 1
5ZG C1 F1 1
5ZG C2 F1 1
5ZG C3 F1 1
5ZG C4 F1 1
5ZG C5 F1 1
5ZG C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5ZG
_pdbe_chem_comp_rdkit_properties.exactmw 214.076
_pdbe_chem_comp_rdkit_properties.amw 214.201
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 105.423
_pdbe_chem_comp_rdkit_properties.tpsa 46.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.608
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.802
_pdbe_chem_comp_rdkit_properties.chi0v 7.566
_pdbe_chem_comp_rdkit_properties.chi1v 4.768
_pdbe_chem_comp_rdkit_properties.chi2v 1.869
_pdbe_chem_comp_rdkit_properties.chi3v 1.869
_pdbe_chem_comp_rdkit_properties.chi4v 1.140
_pdbe_chem_comp_rdkit_properties.chi0n 21.672
_pdbe_chem_comp_rdkit_properties.chi1n 10.634
_pdbe_chem_comp_rdkit_properties.chi2n 1.040
_pdbe_chem_comp_rdkit_properties.chi3n 1.040
_pdbe_chem_comp_rdkit_properties.chi4n 0.588
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.630
_pdbe_chem_comp_rdkit_properties.kappa1 2.542
_pdbe_chem_comp_rdkit_properties.kappa2 4.739
_pdbe_chem_comp_rdkit_properties.kappa3 3.623
_pdbe_chem_comp_rdkit_properties.Phi 0.860
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5ZG UniChem PDBe 5ZG
5ZG UniChem SureChEMBL SCHEMBL914541
5ZG UniChem PubChem 87175446
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5ZG C1 0.811 0.474 0.448 ETKDGv3 1
5ZG C2 1.464 -0.676 0.690 ETKDGv3 2
5ZG C3 2.918 -0.774 0.449 ETKDGv3 3
5ZG C4 3.596 0.277 -0.042 ETKDGv3 4
5ZG C5 2.879 1.546 -0.308 ETKDGv3 5
5ZG C6 1.563 1.638 -0.082 ETKDGv3 6
5ZG C7 -0.674 0.575 0.657 ETKDGv3 7
5ZG C8 5.078 0.192 -0.255 ETKDGv3 8
5ZG C9 -3.751 -0.751 0.048 ETKDGv3 9
5ZG C10 -5.218 -0.503 0.364 ETKDGv3 10
5ZG P -1.561 0.142 -0.876 ETKDGv3 11
5ZG O1 -3.240 0.357 -0.654 ETKDGv3 12
5ZG O2 -1.205 -1.453 -1.328 ETKDGv3 13
5ZG O3 -1.104 1.068 -1.979 ETKDGv3 14
5ZG H1 0.935 -1.544 1.064 ETKDGv3 15
5ZG H2 3.427 -1.704 0.672 ETKDGv3 16
5ZG H3 3.416 2.405 -0.690 ETKDGv3 17
5ZG H4 1.047 2.568 -0.287 ETKDGv3 18
5ZG H5 -0.945 1.612 0.948 ETKDGv3 19
5ZG H6 -0.998 -0.099 1.478 ETKDGv3 20
5ZG H7 5.356 -0.799 -0.674 ETKDGv3 21
5ZG H8 5.417 0.974 -0.967 ETKDGv3 22
5ZG H9 5.601 0.338 0.714 ETKDGv3 23
5ZG H10 -3.686 -1.671 -0.574 ETKDGv3 24
5ZG H11 -3.216 -0.905 1.011 ETKDGv3 25
5ZG H12 -5.792 -0.361 -0.576 ETKDGv3 26
5ZG H13 -5.323 0.406 0.995 ETKDGv3 27
5ZG H14 -5.637 -1.372 0.913 ETKDGv3 28
5ZG H15 -1.160 -1.961 -0.479 ETKDGv3 29
#