data_64B
#
_chem_comp.id 64B
_chem_comp.name "methyl (2Z)-cyano[3-(2-fluoro-4-methoxyphenyl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H11 F N2 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-25
_chem_comp.pdbx_modified_date 2016-07-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 322.312
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 64B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HQE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
64B C2 C1 C 0 1 N N N N N N -34.062 -6.559 3.531 -0.282 -1.578 -0.173 C2 64B 1
64B O21 O1 O 0 1 N N N N N N -31.854 -10.428 -0.115 4.628 -1.187 -0.529 O21 64B 2
64B C1 C2 C 0 1 N N N N N N -33.389 -5.499 3.920 -1.485 -0.806 -0.088 C1 64B 3
64B C4 C3 C 0 1 N N N N N N -34.060 -4.803 5.054 -2.741 -1.459 -0.001 C4 64B 4
64B O5 O2 O 0 1 N N N N N N -33.521 -3.799 5.526 -3.763 -0.803 0.071 O5 64B 5
64B N3 N1 N 0 1 N N N N N N -34.631 -7.551 3.164 0.673 -2.190 -0.241 N3 64B 6
64B O6 O3 O 0 1 N N N N N N -35.187 -5.429 5.549 -2.802 -2.807 0.001 O6 64B 7
64B C7 C4 C 0 1 N N N N N N -35.892 -4.729 6.643 -4.100 -3.397 0.091 C7 64B 8
64B C8 C5 C 0 1 N N N N N N -32.396 -4.871 3.286 -1.422 0.589 -0.090 C8 64B 9
64B N9 N2 N 0 1 N N N N N N -31.656 -5.325 2.262 -0.286 1.332 -0.175 N9 64B 10
64B C10 C6 C 0 1 N N N N N N -30.645 -4.604 1.809 -0.349 2.654 -0.173 C10 64B 11
64B C11 C7 C 0 1 N N N N N N -30.566 -3.218 2.463 -1.765 3.177 -0.071 C11 64B 12
64B S12 S1 S 0 1 N N N N N N -31.680 -3.350 3.810 -2.768 1.656 0.005 S12 64B 13
64B O13 O4 O 0 1 N N N N N N -29.819 -4.941 0.924 0.626 3.371 -0.245 O13 64B 14
64B C14 C8 C 0 1 Y N N N N N -31.767 -6.658 1.632 0.961 0.693 -0.264 C14 64B 15
64B C15 C9 C 0 1 Y N N N N N -32.166 -6.738 0.290 1.492 0.379 -1.507 C15 64B 16
64B C16 C10 C 0 1 Y N N N N N -32.190 -8.050 -0.231 2.719 -0.250 -1.594 C16 64B 17
64B C17 C11 C 0 1 Y N N N N N -31.865 -9.152 0.535 3.421 -0.568 -0.441 C17 64B 18
64B C18 C12 C 0 1 Y N N N N N -31.472 -9.036 1.810 2.891 -0.255 0.803 C18 64B 19
64B C19 C13 C 0 1 Y N N N N N -31.402 -7.762 2.363 1.666 0.379 0.892 C19 64B 20
64B F20 F1 F 0 1 N N N N N N -31.013 -7.569 3.638 1.152 0.689 2.102 F20 64B 21
64B C22 C14 C 0 1 N N N N N N -31.658 -11.573 0.744 5.295 -1.485 0.699 C22 64B 22
64B H2 H2 H 0 1 N N N N N N -36.767 -5.319 6.953 -4.704 -3.078 -0.758 H2 64B 23
64B H3 H3 H 0 1 N N N N N N -35.211 -4.606 7.498 -4.007 -4.483 0.083 H3 64B 24
64B H4 H4 H 0 1 N N N N N N -36.222 -3.740 6.293 -4.580 -3.080 1.017 H4 64B 25
64B H6 H6 H 0 1 N N N N N N -29.546 -3.005 2.814 -1.893 3.767 0.836 H6 64B 26
64B H7 H7 H 0 1 N N N N N N -30.885 -2.432 1.762 -2.023 3.764 -0.953 H7 64B 27
64B H8 H8 H 0 1 N N N N N N -32.432 -5.870 -0.295 0.947 0.627 -2.406 H8 64B 28
64B H9 H9 H 0 1 N N N N N N -32.472 -8.197 -1.263 3.132 -0.494 -2.562 H9 64B 29
64B H10 H10 H 0 1 N N N N N N -31.216 -9.908 2.393 3.438 -0.504 1.700 H10 64B 30
64B H11 H11 H 0 1 N N N N N N -31.668 -12.492 0.139 6.245 -1.976 0.487 H11 64B 31
64B H12 H12 H 0 1 N N N N N N -30.690 -11.483 1.259 5.479 -0.560 1.246 H12 64B 32
64B H13 H13 H 0 1 N N N N N N -32.467 -11.616 1.488 4.671 -2.145 1.301 H13 64B 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
64B C16 C15 DOUB Y N 1
64B C16 C17 SING Y N 2
64B O21 C17 SING N N 3
64B O21 C22 SING N N 4
64B C15 C14 SING Y N 5
64B C17 C18 DOUB Y N 6
64B O13 C10 DOUB N N 7
64B C14 N9 SING N N 8
64B C14 C19 DOUB Y N 9
64B C10 N9 SING N N 10
64B C10 C11 SING N N 11
64B C18 C19 SING Y N 12
64B N9 C8 SING N N 13
64B C19 F20 SING N N 14
64B C11 S12 SING N N 15
64B N3 C2 TRIP N N 16
64B C8 S12 SING N N 17
64B C8 C1 DOUB N Z 18
64B C2 C1 SING N N 19
64B C1 C4 SING N N 20
64B C4 O5 DOUB N N 21
64B C4 O6 SING N N 22
64B O6 C7 SING N N 23
64B C7 H2 SING N N 24
64B C7 H3 SING N N 25
64B C7 H4 SING N N 26
64B C11 H6 SING N N 27
64B C11 H7 SING N N 28
64B C15 H8 SING N N 29
64B C16 H9 SING N N 30
64B C18 H10 SING N N 31
64B C22 H11 SING N N 32
64B C22 H12 SING N N 33
64B C22 H13 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
64B SMILES ACDLabs 12.01 "C(/C(C(=O)OC)=C1/SCC(N1c2c(cc(OC)cc2)F)=O)#N"
64B InChI InChI 1.03 InChI=1S/C14H11FN2O4S/c1-20-8-3-4-11(10(15)5-8)17-12(18)7-22-13(17)9(6-16)14(19)21-2/h3-5H,7H2,1-2H3/b13-9-
64B InChIKey InChI 1.03 XAORSEKHZCMSPW-LCYFTJDESA-N
64B SMILES_CANONICAL CACTVS 3.385 "COC(=O)C(/C#N)=C/1SCC(=O)N/1c2ccc(OC)cc2F"
64B SMILES CACTVS 3.385 "COC(=O)C(C#N)=C1SCC(=O)N1c2ccc(OC)cc2F"
64B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "COc1ccc(c(c1)F)N\2C(=O)CS/C2=C(/C#N)\C(=O)OC"
64B SMILES "OpenEye OEToolkits" 2.0.4 "COc1ccc(c(c1)F)N2C(=O)CSC2=C(C#N)C(=O)OC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
64B "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2Z)-cyano[3-(2-fluoro-4-methoxyphenyl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate"
64B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "methyl (2~{Z})-2-cyano-2-[3-(2-fluoranyl-4-methoxy-phenyl)-4-oxidanylidene-1,3-thiazolidin-2-ylidene]ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
64B 'Create component' 2016-01-25 RCSB
64B 'Initial release' 2016-07-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
64B C2 C 8.592 0.881 1
64B O21 O 5.640 -4.069 2
64B C1 C 8.280 2.349 3
64B C4 C 9.395 3.352 4
64B O5 O 9.083 4.819 5
64B N3 N 8.904 -0.586 6
64B O6 O 10.822 2.889 7
64B C7 C 11.936 3.893 8
64B C8 C 6.854 2.812 9
64B N9 N 5.640 1.931 10
64B C10 C 4.427 2.812 11
64B C11 C 4.890 4.239 12
64B S12 S 6.390 4.239 13
64B O13 O 3.000 2.349 14
64B C14 C 5.640 0.430 15
64B C15 C 6.939 -0.320 16
64B C16 C 6.939 -1.819 17
64B C17 C 5.640 -2.570 18
64B C18 C 4.341 -1.819 19
64B C19 C 4.341 -0.320 20
64B F20 F 3.042 0.430 21
64B C22 C 6.939 -4.819 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
64B C16 C15 DOUBLE NONE 1
64B C16 C17 SINGLE NONE 2
64B O21 C17 SINGLE NONE 3
64B O21 C22 SINGLE NONE 4
64B C15 C14 SINGLE NONE 5
64B C17 C18 DOUBLE NONE 6
64B O13 C10 DOUBLE NONE 7
64B C14 N9 SINGLE NONE 8
64B C14 C19 DOUBLE NONE 9
64B C10 N9 SINGLE NONE 10
64B C10 C11 SINGLE NONE 11
64B C18 C19 SINGLE NONE 12
64B N9 C8 SINGLE ENDUPRIGHT 13
64B C19 F20 SINGLE NONE 14
64B C11 S12 SINGLE NONE 15
64B N3 C2 TRIPLE NONE 16
64B C8 S12 SINGLE ENDUPRIGHT 17
64B C8 C1 DOUBLE NONE 18
64B C2 C1 SINGLE ENDUPRIGHT 19
64B C1 C4 SINGLE ENDUPRIGHT 20
64B C4 O5 DOUBLE NONE 21
64B C4 O6 SINGLE NONE 22
64B O6 C7 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
64B MurckoScaffold S1 scaffold C=C1SCC(=O)N1c1ccccc1 InChI=1S/C10H9NOS/c1-8-11(10(12)7-13-8)9-5-3-2-4-6-9/h2-6H,1,7H2 FWCRGFMMYZLHOD-UHFFFAOYSA-N
64B amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
64B phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
64B C1 S1 1
64B C8 S1 1
64B N9 S1 1
64B C10 S1 1
64B C11 S1 1
64B S12 S1 1
64B O13 S1 1
64B C14 S1 1
64B C15 S1 1
64B C16 S1 1
64B C17 S1 1
64B C18 S1 1
64B C19 S1 1
64B N9 F1 1
64B C10 F1 1
64B O13 F1 1
64B C11 F1 1
64B C14 F2 1
64B C15 F2 1
64B C16 F2 1
64B C17 F2 1
64B C18 F2 1
64B C19 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 64B
_pdbe_chem_comp_rdkit_properties.exactmw 322.042
_pdbe_chem_comp_rdkit_properties.amw 322.317
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.214
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 145.101
_pdbe_chem_comp_rdkit_properties.tpsa 79.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.979
_pdbe_chem_comp_rdkit_properties.CrippenMR 76.117
_pdbe_chem_comp_rdkit_properties.chi0v 11.130
_pdbe_chem_comp_rdkit_properties.chi1v 6.033
_pdbe_chem_comp_rdkit_properties.chi2v 3.172
_pdbe_chem_comp_rdkit_properties.chi3v 3.172
_pdbe_chem_comp_rdkit_properties.chi4v 2.211
_pdbe_chem_comp_rdkit_properties.chi0n 21.314
_pdbe_chem_comp_rdkit_properties.chi1n 10.716
_pdbe_chem_comp_rdkit_properties.chi2n 2.315
_pdbe_chem_comp_rdkit_properties.chi3n 2.315
_pdbe_chem_comp_rdkit_properties.chi4n 1.439
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.530
_pdbe_chem_comp_rdkit_properties.kappa1 6.707
_pdbe_chem_comp_rdkit_properties.kappa2 6.491
_pdbe_chem_comp_rdkit_properties.kappa3 2.756
_pdbe_chem_comp_rdkit_properties.Phi 1.979
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
64B UniChem ChEMBL CHEMBL4283316
64B UniChem PDBe 64B
64B UniChem ZINC ZINC000584905328
64B UniChem PubChem 121232409
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
64B C2 0.144 1.152 -1.452 ETKDGv3 1
64B O21 -2.776 1.308 3.645 ETKDGv3 2
64B C1 0.782 -0.066 -1.897 ETKDGv3 3
64B C4 0.739 -0.337 -3.353 ETKDGv3 4
64B O5 0.900 -1.507 -3.799 ETKDGv3 5
64B N3 -0.366 2.129 -1.100 ETKDGv3 6
64B O6 0.466 0.714 -4.237 ETKDGv3 7
64B C7 0.388 0.532 -5.645 ETKDGv3 8
64B C8 1.413 -0.876 -1.012 ETKDGv3 9
64B N9 1.470 -0.611 0.395 ETKDGv3 10
64B C10 2.652 -1.170 0.954 ETKDGv3 11
64B C11 3.551 -1.874 -0.000 ETKDGv3 12
64B S12 2.575 -2.156 -1.518 ETKDGv3 13
64B O13 2.925 -1.078 2.181 ETKDGv3 14
64B C14 0.375 -0.147 1.207 ETKDGv3 15
64B C15 0.607 0.924 2.205 ETKDGv3 16
64B C16 -0.400 1.370 2.965 ETKDGv3 17
64B C17 -1.757 0.801 2.824 ETKDGv3 18
64B C18 -1.969 -0.178 1.921 ETKDGv3 19
64B C19 -0.858 -0.673 1.081 ETKDGv3 20
64B F20 -1.098 -1.677 0.200 ETKDGv3 21
64B C22 -4.130 0.865 3.626 ETKDGv3 22
64B H2 1.356 0.151 -6.034 ETKDGv3 23
64B H3 0.166 1.507 -6.126 ETKDGv3 24
64B H4 -0.424 -0.185 -5.892 ETKDGv3 25
64B H6 3.883 -2.846 0.421 ETKDGv3 26
64B H7 4.429 -1.235 -0.231 ETKDGv3 27
64B H8 1.592 1.359 2.312 ETKDGv3 28
64B H9 -0.222 2.157 3.686 ETKDGv3 29
64B H10 -2.947 -0.620 1.790 ETKDGv3 30
64B H11 -4.574 1.039 2.623 ETKDGv3 31
64B H12 -4.710 1.440 4.376 ETKDGv3 32
64B H13 -4.183 -0.213 3.886 ETKDGv3 33
#