data_6BI
#
_chem_comp.id 6BI
_chem_comp.name
'[(2~{R},3~{S},4~{R},5~{R})-5-[6-(ethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C18 H28 Cl N6 O8 P'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-26
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 522.877
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6BI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7P8P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6BI N N1 N 0 1 Y N N N N N -0.849 -15.312 6.622 -3.082 -0.922 -0.228 N 6BI 1
6BI C C1 C 0 1 N N R N N N -3.100 -14.307 7.125 -4.950 -1.978 1.015 C 6BI 2
6BI O O1 O 0 1 N N N N N N -3.776 -14.088 5.891 -4.626 -3.368 1.074 O 6BI 3
6BI C1 C2 C 0 1 N N S N N N -3.475 -13.206 8.127 -6.483 -1.770 0.946 C1 6BI 4
6BI C10 C3 C 0 1 N N N N N N 3.371 -20.401 4.313 3.946 -0.165 -0.082 C10 6BI 5
6BI C17 C4 C 0 1 Y N N N N N 1.579 -15.050 4.059 -0.547 -3.458 -0.849 C17 6BI 6
6BI C2 C5 C 0 1 N N R N N N -2.194 -13.000 8.943 -6.664 -0.633 -0.078 C2 6BI 7
6BI C3 C6 C 0 1 N N N N N N -2.252 -13.465 10.376 -7.398 0.541 0.573 C3 6BI 8
6BI C4 C7 C 0 1 N N R N N N -1.592 -14.105 6.974 -4.478 -1.355 -0.324 C4 6BI 9
6BI C5 C8 C 0 1 Y N N N N N -0.938 -16.518 7.265 -2.646 0.333 0.078 C5 6BI 10
6BI C6 C9 C 0 1 Y N N N N N 0.151 -15.460 5.691 -1.973 -1.707 -0.422 C6 6BI 11
6BI C7 C10 C 0 1 Y N N N N N 0.624 -16.752 5.848 -0.864 -0.866 -0.226 C7 6BI 12
6BI C8 C11 C 0 1 Y N N N N N 1.678 -17.147 4.999 0.420 -1.419 -0.365 C8 6BI 13
6BI C9 C12 C 0 1 N N N N N N 3.205 -18.903 4.133 2.880 -1.234 -0.333 C9 6BI 14
6BI N1 N2 N 0 1 Y N N N N N -0.077 -17.412 6.846 -1.345 0.364 0.076 N1 6BI 15
6BI N2 N3 N 0 1 N N N N N N 2.227 -18.373 5.068 1.549 -0.640 -0.184 N2 6BI 16
6BI N4 N4 N 0 1 Y N N N N N 2.144 -16.262 4.099 0.525 -2.707 -0.675 N4 6BI 17
6BI N5 N5 N 0 1 Y N N N N N 0.587 -14.557 4.809 -1.769 -2.983 -0.733 N5 6BI 18
6BI O1 O2 O 0 1 N N N N N N -3.855 -12.004 7.466 -7.129 -2.961 0.491 O1 6BI 19
6BI O11 O3 O 0 1 N N N N N N -3.722 -11.904 13.495 -9.941 2.602 0.366 O11 6BI 20
6BI O12 O4 O 0 1 N N N N N N -1.136 -13.694 8.246 -5.352 -0.219 -0.494 O12 6BI 21
6BI O2 O5 O 0 1 N N N N N N -3.076 -12.553 11.133 -7.665 1.541 -0.412 O2 6BI 22
6BI O3 O6 O 0 1 N N N N N N -3.449 -14.331 12.833 -8.436 3.858 -1.387 O3 6BI 23
6BI O4 O7 O 0 1 N N N N N N -5.439 -13.037 12.040 -7.725 3.617 1.023 O4 6BI 24
6BI P P1 P 0 1 N N N N N N -3.905 -12.923 12.449 -8.427 2.920 -0.078 P 6BI 25
6BI H1 H1 H 0 1 N N N N N N -3.316 -15.300 7.546 -4.523 -1.444 1.864 H1 6BI 26
6BI H2 H2 H 0 1 N N N N N N -4.709 -14.220 6.013 -4.979 -3.822 1.851 H2 6BI 27
6BI H3 H3 H 0 1 N N N N N N -4.278 -13.567 8.787 -6.871 -1.472 1.920 H3 6BI 28
6BI H4 H4 H 0 1 N N N N N N 4.227 -20.992 3.956 3.827 0.644 -0.802 H4 6BI 29
6BI H5 H5 H 0 1 N N N N N N 2.686 -21.052 4.875 3.835 0.228 0.929 H5 6BI 30
6BI H7 H7 H 0 1 N N N N N N 1.980 -14.375 3.317 -0.416 -4.500 -1.100 H7 6BI 31
6BI H8 H8 H 0 1 N N N N N N -1.969 -11.923 8.945 -7.231 -0.994 -0.936 H8 6BI 32
6BI H9 H9 H 0 1 N N N N N N -2.685 -14.475 10.419 -8.338 0.191 0.999 H9 6BI 33
6BI H10 H10 H 0 1 N N N N N N -1.237 -13.483 10.799 -6.777 0.965 1.362 H10 6BI 34
6BI H11 H11 H 0 1 N N N N N N -1.409 -13.321 6.225 -4.603 -2.065 -1.142 H11 6BI 35
6BI H12 H12 H 0 1 N N N N N N -1.655 -16.715 8.048 -3.286 1.176 0.289 H12 6BI 36
6BI H13 H13 H 0 1 N N N N N N 4.173 -18.410 4.307 2.991 -1.627 -1.344 H13 6BI 37
6BI H14 H14 H 0 1 N N N N N N 2.869 -18.699 3.106 3.000 -2.043 0.387 H14 6BI 38
6BI H15 H15 H 0 1 N N N N N N 1.458 -19.011 5.039 1.460 0.299 0.042 H15 6BI 39
6BI H16 H16 H 0 1 N N N N N N -4.080 -11.345 8.112 -6.998 -3.724 1.070 H16 6BI 40
6BI H17 H17 H 0 1 N N N N N N -4.563 -11.520 13.714 -10.461 2.145 -0.309 H17 6BI 41
6BI H18 H18 H 0 1 N N N N N N -4.175 -14.936 12.740 -8.880 4.708 -1.258 H18 6BI 42
6BI C11 C13 C 0 1 N N N N N N ? ? ? 5.336 -0.785 -0.238 C11 6BI 43
6BI C12 C14 C 0 1 N N N N N N ? ? ? 6.403 0.283 0.014 C12 6BI 44
6BI C13 C15 C 0 1 N N N N N N ? ? ? 7.793 -0.337 -0.142 C13 6BI 45
6BI C14 C16 C 0 1 N N N N N N ? ? ? 8.858 0.731 0.109 C14 6BI 46
6BI N3 N6 N 0 1 N N N N N N ? ? ? 10.189 0.138 -0.040 N3 6BI 47
6BI C15 C17 C 0 1 N N N N N N ? ? ? 11.289 0.896 0.136 C15 6BI 48
6BI C16 C18 C 0 1 N N N N N N ? ? ? 12.659 0.285 -0.017 C16 6BI 49
6BI O5 O8 O 0 1 N N N N N N ? ? ? 11.177 2.070 0.419 O5 6BI 50
6BI CL1 CL1 CL 0 0 N N N N N N ? ? ? 13.915 1.544 0.279 CL1 6BI 51
6BI H6 H6 H 0 1 N N N N N N ? ? ? 5.456 -1.595 0.483 H6 6BI 52
6BI H19 H19 H 0 1 N N N N N N ? ? ? 5.448 -1.179 -1.248 H19 6BI 53
6BI H20 H20 H 0 1 N N N N N N ? ? ? 6.283 1.092 -0.707 H20 6BI 54
6BI H21 H21 H 0 1 N N N N N N ? ? ? 6.291 0.677 1.024 H21 6BI 55
6BI H22 H22 H 0 1 N N N N N N ? ? ? 7.912 -1.146 0.578 H22 6BI 56
6BI H23 H23 H 0 1 N N N N N N ? ? ? 7.904 -0.731 -1.153 H23 6BI 57
6BI H24 H24 H 0 1 N N N N N N ? ? ? 8.739 1.541 -0.611 H24 6BI 58
6BI H25 H25 H 0 1 N N N N N N ? ? ? 8.748 1.125 1.119 H25 6BI 59
6BI H26 H26 H 0 1 N N N N N N ? ? ? 10.279 -0.801 -0.266 H26 6BI 60
6BI H27 H27 H 0 1 N N N N N N ? ? ? 12.778 -0.524 0.703 H27 6BI 61
6BI H29 H29 H 0 1 N N N N N N ? ? ? 12.770 -0.108 -1.028 H29 6BI 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6BI C17 N4 DOUB Y N 1
6BI C17 N5 SING Y N 2
6BI N4 C8 SING Y N 3
6BI C9 C10 SING N N 4
6BI C9 N2 SING N N 5
6BI N5 C6 DOUB Y N 6
6BI C8 N2 SING N N 7
6BI C8 C7 DOUB Y N 8
6BI C6 C7 SING Y N 9
6BI C6 N SING Y N 10
6BI C7 N1 SING Y N 11
6BI O C SING N N 12
6BI N C4 SING N N 13
6BI N C5 SING Y N 14
6BI N1 C5 DOUB Y N 15
6BI C4 C SING N N 16
6BI C4 O12 SING N N 17
6BI C C1 SING N N 18
6BI O1 C1 SING N N 19
6BI C1 C2 SING N N 20
6BI O12 C2 SING N N 21
6BI C2 C3 SING N N 22
6BI C3 O2 SING N N 23
6BI O2 P SING N N 24
6BI O4 P DOUB N N 25
6BI P O3 SING N N 26
6BI P O11 SING N N 27
6BI C H1 SING N N 28
6BI O H2 SING N N 29
6BI C1 H3 SING N N 30
6BI C10 H4 SING N N 31
6BI C10 H5 SING N N 32
6BI C17 H7 SING N N 33
6BI C2 H8 SING N N 34
6BI C3 H9 SING N N 35
6BI C3 H10 SING N N 36
6BI C4 H11 SING N N 37
6BI C5 H12 SING N N 38
6BI C9 H13 SING N N 39
6BI C9 H14 SING N N 40
6BI N2 H15 SING N N 41
6BI O1 H16 SING N N 42
6BI O11 H17 SING N N 43
6BI O3 H18 SING N N 44
6BI C11 C10 SING N N 45
6BI C12 C11 SING N N 46
6BI C13 C12 SING N N 47
6BI C14 C13 SING N N 48
6BI N3 C14 SING N N 49
6BI C15 N3 SING N N 50
6BI C16 C15 SING N N 51
6BI O5 C15 DOUB N N 52
6BI CL1 C16 SING N N 53
6BI C11 H6 SING N N 54
6BI C11 H19 SING N N 55
6BI C12 H20 SING N N 56
6BI C12 H21 SING N N 57
6BI C13 H22 SING N N 58
6BI C13 H23 SING N N 59
6BI C14 H24 SING N N 60
6BI C14 H25 SING N N 61
6BI N3 H26 SING N N 62
6BI C16 H27 SING N N 63
6BI C16 H29 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6BI InChI InChI 1.03 'InChI=1S/C18H28ClN6O8P/c19-7-12(26)20-5-3-1-2-4-6-21-16-13-17(23-9-22-16)25(10-24-13)18-15(28)14(27)11(33-18)8-32-34(29,30)31/h9-11,14-15,18,27-28H,1-8H2,(H,20,26)(H,21,22,23)(H2,29,30,31)/t11-,14-,15-,18-/m1/s1'
6BI InChIKey InChI 1.03 QFONDZUXFQHEPG-XKLVTHTNSA-N
6BI SMILES_CANONICAL CACTVS 3.385 'O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23'
6BI SMILES CACTVS 3.385 'O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23'
6BI SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl'
6BI SMILES 'OpenEye OEToolkits' 2.0.7 'c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl'
#
_pdbx_chem_comp_identifier.comp_id 6BI
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'[(2~{R},3~{S},4~{R},5~{R})-5-[6-[6-(2-chloranylethanoylamino)hexylamino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6BI 'Create component' 2021-07-26 PDBE
6BI 'Initial release' 2022-06-01 RCSB
6BI 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 6BI
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C16
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 7P8P
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6BI N N 12.214 4.744 1
6BI C C 11.800 7.384 2
6BI O O 10.300 7.387 3
6BI C1 C 12.684 8.596 4
6BI C10 C 8.196 -1.714 5
6BI C17 C 8.196 4.286 6
6BI C2 C 14.110 8.130 7
6BI C3 C 15.325 9.010 8
6BI C4 C 12.680 6.169 9
6BI C5 C 13.089 3.536 10
6BI C6 C 10.794 4.286 11
6BI C7 C 10.794 2.786 12
6BI C8 C 9.495 2.036 13
6BI C9 C 8.196 -0.214 14
6BI N1 N 12.214 2.329 15
6BI N2 N 9.495 0.536 16
6BI N4 N 8.196 2.786 17
6BI N5 N 9.495 5.036 18
6BI O1 O 12.223 10.024 19
6BI O11 O 17.029 10.492 20
6BI O12 O 14.107 6.630 21
6BI O2 O 16.694 8.397 22
6BI O3 O 18.788 8.062 23
6BI O4 O 19.124 10.156 24
6BI P P 17.909 9.277 25
6BI C11 C 6.897 -2.464 26
6BI C12 C 6.897 -3.964 27
6BI C13 C 5.598 -4.714 28
6BI C14 C 5.598 -6.214 29
6BI N3 N 4.299 -6.964 30
6BI C15 C 4.299 -8.464 31
6BI C16 C 3.000 -9.214 32
6BI O5 O 5.598 -9.214 33
6BI CL1 Cl 3.000 -10.714 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6BI C17 N4 DOUBLE NONE 1
6BI C17 N5 SINGLE NONE 2
6BI N4 C8 SINGLE NONE 3
6BI C9 C10 SINGLE NONE 4
6BI C9 N2 SINGLE NONE 5
6BI N5 C6 DOUBLE NONE 6
6BI C8 N2 SINGLE NONE 7
6BI C8 C7 DOUBLE NONE 8
6BI C6 C7 SINGLE NONE 9
6BI C6 N SINGLE NONE 10
6BI C7 N1 SINGLE NONE 11
6BI C O SINGLE BEGINDASH 12
6BI C4 N SINGLE BEGINWEDGE 13
6BI N C5 SINGLE NONE 14
6BI N1 C5 DOUBLE NONE 15
6BI C4 C SINGLE NONE 16
6BI C4 O12 SINGLE NONE 17
6BI C C1 SINGLE NONE 18
6BI C1 O1 SINGLE BEGINDASH 19
6BI C1 C2 SINGLE NONE 20
6BI O12 C2 SINGLE NONE 21
6BI C2 C3 SINGLE BEGINWEDGE 22
6BI C3 O2 SINGLE NONE 23
6BI O2 P SINGLE NONE 24
6BI O4 P DOUBLE NONE 25
6BI P O3 SINGLE NONE 26
6BI P O11 SINGLE NONE 27
6BI C11 C10 SINGLE NONE 28
6BI C12 C11 SINGLE NONE 29
6BI C13 C12 SINGLE NONE 30
6BI C14 C13 SINGLE NONE 31
6BI N3 C14 SINGLE NONE 32
6BI C15 N3 SINGLE NONE 33
6BI C16 C15 SINGLE NONE 34
6BI O5 C15 DOUBLE NONE 35
6BI CL1 C16 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6BI MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
6BI adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
6BI amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6BI imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
6BI phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
6BI purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
6BI pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
6BI ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6BI N S1 1
6BI C S1 1
6BI C1 S1 1
6BI C17 S1 1
6BI C2 S1 1
6BI C4 S1 1
6BI C5 S1 1
6BI C6 S1 1
6BI C7 S1 1
6BI C8 S1 1
6BI N1 S1 1
6BI N4 S1 1
6BI N5 S1 1
6BI O12 S1 1
6BI N4 F1 1
6BI C8 F1 1
6BI C7 F1 1
6BI C6 F1 1
6BI N5 F1 1
6BI C17 F1 1
6BI N F1 1
6BI C5 F1 1
6BI N1 F1 1
6BI N2 F1 1
6BI H5 F2 1
6BI H7 F2 1
6BI H9 F2 1
6BI H8 F2 1
6BI C6 F3 1
6BI C7 F3 1
6BI N1 F3 1
6BI C5 F3 1
6BI N F3 1
6BI O11 F4 1
6BI P F4 1
6BI O4 F4 1
6BI O2 F4 1
6BI O3 F4 1
6BI N1 F5 1
6BI C5 F5 1
6BI N F5 1
6BI C6 F5 1
6BI C7 F5 1
6BI C8 F5 1
6BI N4 F5 1
6BI C17 F5 1
6BI N5 F5 1
6BI C7 F6 1
6BI C8 F6 1
6BI N4 F6 1
6BI C17 F6 1
6BI N5 F6 1
6BI C6 F6 1
6BI C F7 1
6BI C1 F7 1
6BI C2 F7 1
6BI O12 F7 1
6BI C4 F7 1
6BI C3 F7 1
6BI O2 F7 1
6BI O1 F7 1
6BI O F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6BI
_pdbe_chem_comp_rdkit_properties.exactmw 522.139
_pdbe_chem_comp_rdkit_properties.amw 522.883
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.250
_pdbe_chem_comp_rdkit_properties.tpsa 201.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.927
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.900
_pdbe_chem_comp_rdkit_properties.chi0v 17.425
_pdbe_chem_comp_rdkit_properties.chi1v 9.889
_pdbe_chem_comp_rdkit_properties.chi2v 3.644
_pdbe_chem_comp_rdkit_properties.chi3v 3.644
_pdbe_chem_comp_rdkit_properties.chi4v 2.186
_pdbe_chem_comp_rdkit_properties.chi0n 43.774
_pdbe_chem_comp_rdkit_properties.chi1n 21.578
_pdbe_chem_comp_rdkit_properties.chi2n 3.167
_pdbe_chem_comp_rdkit_properties.chi3n 3.167
_pdbe_chem_comp_rdkit_properties.chi4n 1.949
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.900
_pdbe_chem_comp_rdkit_properties.kappa1 8.051
_pdbe_chem_comp_rdkit_properties.kappa2 12.179
_pdbe_chem_comp_rdkit_properties.kappa3 7.057
_pdbe_chem_comp_rdkit_properties.Phi 2.884
#
_pdbe_chem_comp_external_mappings.comp_id 6BI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 6BI
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6BI N -3.282 -0.996 -0.445 ETKDGv3 1
6BI C -5.057 -2.706 -0.387 ETKDGv3 2
6BI O -5.425 -3.843 -1.134 ETKDGv3 3
6BI C1 -6.251 -1.895 0.057 ETKDGv3 4
6BI C10 3.165 1.327 1.600 ETKDGv3 5
6BI C17 -0.404 -3.091 0.610 ETKDGv3 6
6BI C2 -6.429 -0.888 -1.085 ETKDGv3 7
6BI C3 -6.868 0.486 -0.570 ETKDGv3 8
6BI C4 -4.288 -1.699 -1.247 ETKDGv3 9
6BI C5 -2.990 0.419 -0.459 ETKDGv3 10
6BI C6 -2.088 -1.544 0.079 ETKDGv3 11
6BI C7 -1.199 -0.480 0.372 ETKDGv3 12
6BI C8 0.051 -0.731 0.761 ETKDGv3 13
6BI C9 2.367 0.032 1.400 ETKDGv3 14
6BI N1 -1.815 0.748 0.010 ETKDGv3 15
6BI N2 0.991 0.324 0.999 ETKDGv3 16
6BI N4 0.432 -2.121 0.899 ETKDGv3 17
6BI N5 -1.740 -2.793 0.140 ETKDGv3 18
6BI O1 -7.398 -2.675 0.308 ETKDGv3 19
6BI O11 -7.622 3.965 -2.371 ETKDGv3 20
6BI O12 -5.207 -0.769 -1.786 ETKDGv3 21
6BI O2 -7.040 1.355 -1.665 ETKDGv3 22
6BI O3 -6.208 3.476 -0.059 ETKDGv3 23
6BI O4 -8.738 2.842 -0.293 ETKDGv3 24
6BI P -7.440 2.902 -1.068 ETKDGv3 25
6BI H1 -4.468 -3.042 0.494 ETKDGv3 26
6BI H2 -5.866 -3.540 -1.971 ETKDGv3 27
6BI H3 -5.976 -1.366 0.998 ETKDGv3 28
6BI H4 3.241 1.877 0.638 ETKDGv3 29
6BI H5 2.607 1.981 2.305 ETKDGv3 30
6BI H7 -0.090 -4.121 0.714 ETKDGv3 31
6BI H8 -7.196 -1.253 -1.804 ETKDGv3 32
6BI H9 -7.827 0.364 -0.018 ETKDGv3 33
6BI H10 -6.083 0.870 0.122 ETKDGv3 34
6BI H11 -3.771 -2.219 -2.084 ETKDGv3 35
6BI H12 -3.679 1.160 -0.842 ETKDGv3 36
6BI H13 2.354 -0.547 2.349 ETKDGv3 37
6BI H14 2.843 -0.584 0.608 ETKDGv3 38
6BI H15 0.684 1.317 0.880 ETKDGv3 39
6BI H16 -7.729 -3.042 -0.551 ETKDGv3 40
6BI H17 -8.289 3.530 -2.960 ETKDGv3 41
6BI H18 -5.391 3.449 -0.619 ETKDGv3 42
6BI C11 4.564 1.086 2.195 ETKDGv3 43
6BI C12 5.498 0.218 1.333 ETKDGv3 44
6BI C13 5.800 0.842 -0.039 ETKDGv3 45
6BI C14 6.848 0.035 -0.816 ETKDGv3 46
6BI N3 8.146 0.062 -0.142 ETKDGv3 47
6BI C15 8.989 1.223 -0.133 ETKDGv3 48
6BI C16 10.294 1.194 0.594 ETKDGv3 49
6BI O5 8.657 2.258 -0.772 ETKDGv3 50
6BI CL1 11.529 0.421 -0.426 ETKDGv3 51
6BI H6 4.452 0.604 3.190 ETKDGv3 52
6BI H19 5.049 2.072 2.367 ETKDGv3 53
6BI H20 5.069 -0.799 1.203 ETKDGv3 54
6BI H21 6.450 0.098 1.894 ETKDGv3 55
6BI H22 4.871 0.862 -0.648 ETKDGv3 56
6BI H23 6.149 1.889 0.089 ETKDGv3 57
6BI H24 6.953 0.446 -1.843 ETKDGv3 58
6BI H25 6.503 -1.018 -0.913 ETKDGv3 59
6BI H26 8.491 -0.816 0.308 ETKDGv3 60
6BI H27 10.188 0.621 1.539 ETKDGv3 61
6BI H29 10.620 2.226 0.842 ETKDGv3 62
#