data_6CF
#
_chem_comp.id 6CF
_chem_comp.name "2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 F2 N3 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-04-19
_chem_comp.pdbx_modified_date 2012-01-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 501.165
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6CF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3RJH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6CF N1 N1 N 0 1 N N N N N N 6.721 7.461 10.613 5.396 0.550 -0.612 N1 6CF 1
6CF P1 P1 P 0 1 N N N N N N 5.098 5.378 15.144 -1.016 -1.066 0.623 P1 6CF 2
6CF C2 C2 C 0 1 N N N N N N 7.625 7.861 9.612 5.469 0.882 0.690 C2 6CF 3
6CF O2 O2 O 0 1 N N N N N N 7.186 8.215 8.504 4.855 0.223 1.513 O2 6CF 4
6CF P2 P2 P 0 1 N N N N N N 4.017 2.688 14.103 -3.799 -0.033 0.405 P2 6CF 5
6CF N3 N3 N 0 1 N N N N N N 8.955 7.857 9.881 6.200 1.919 1.095 N3 6CF 6
6CF P3 P3 P 0 1 N N N N N N 3.894 1.277 16.396 -6.376 1.208 -0.375 P3 6CF 7
6CF C4 C4 C 0 1 N N N N N N 9.392 7.483 11.086 6.877 2.652 0.222 C4 6CF 8
6CF N4 N4 N 0 1 N N N N N N 10.709 7.469 11.296 7.630 3.721 0.652 N4 6CF 9
6CF C5 C5 C 0 1 N N N N N N 8.498 7.101 12.127 6.822 2.331 -1.150 C5 6CF 10
6CF C6 C6 C 0 1 N N N N N N 7.185 7.108 11.853 6.074 1.274 -1.546 C6 6CF 11
6CF "C1'" "C1'" C 0 1 N N R N N N 5.275 7.402 10.291 4.588 -0.600 -1.027 "C1'" 6CF 12
6CF F1A F1A F 0 1 N N N N N N 6.221 3.774 13.511 -1.691 1.129 -0.683 F1A 6CF 13
6CF O1A O1A O 0 1 N N N N N N 3.876 5.400 15.997 -0.835 -0.285 2.018 O1A 6CF 14
6CF O1B O1B O 0 1 N N N N N N 4.171 2.244 12.695 -3.633 0.686 1.688 O1B 6CF 15
6CF O1G O1G O 0 1 N N N N N N 3.601 2.642 16.906 -6.731 2.326 -1.478 O1G 6CF 16
6CF "C2'" "C2'" C 0 1 N N N N N N 4.872 6.042 9.707 5.129 -1.897 -0.384 "C2'" 6CF 17
6CF F2A F2A F 0 1 N N N N N N 6.049 3.048 15.538 -2.345 -0.835 -1.649 F2A 6CF 18
6CF O2A O2A O 0 1 N N N N N N 6.351 5.956 15.697 -1.541 -2.426 0.883 O2A 6CF 19
6CF O2B O2B O 0 1 N N N N N N 2.738 3.326 14.520 -4.370 -1.512 0.689 O2B 6CF 20
6CF O2G O2G O 0 1 N N N N N N 4.979 0.484 17.038 -7.321 -0.077 -0.589 O2G 6CF 21
6CF "C3'" "C3'" C 0 1 N N S N N N 4.448 5.299 10.967 3.858 -2.713 -0.060 "C3'" 6CF 22
6CF "O3'" "O3'" O 0 1 N N N N N N 3.562 4.218 10.693 3.863 -3.951 -0.774 "O3'" 6CF 23
6CF C3A C3A C 0 1 N N N N N N 5.411 3.703 14.561 -2.187 -0.156 -0.437 C3A 6CF 24
6CF O3B O3B O 0 1 N N N N N N 4.167 1.406 14.906 -4.834 0.771 -0.530 O3B 6CF 25
6CF O3G O3G O 0 1 N N N N N N 2.647 0.492 16.577 -6.597 1.763 0.979 O3G 6CF 26
6CF "C4'" "C4'" C 0 1 N N R N N N 3.708 6.390 11.715 2.700 -1.813 -0.546 "C4'" 6CF 27
6CF "O4'" "O4'" O 0 1 N N N N N N 4.519 7.570 11.487 3.240 -0.474 -0.525 "O4'" 6CF 28
6CF "C5'" "C5'" C 0 1 N N N N N N 3.494 6.124 13.189 1.507 -1.921 0.406 "C5'" 6CF 29
6CF "O5'" "O5'" O 0 1 N N N N N N 4.691 6.338 13.933 0.408 -1.174 -0.121 "O5'" 6CF 30
6CF HN4 HN4 H 0 1 N N N N N N 11.335 7.733 10.562 7.666 3.939 1.597 HN4 6CF 31
6CF HN4A HN4A H 0 0 N N N N N N 11.070 7.194 12.187 8.124 4.255 0.011 HN4A 6CF 32
6CF H5 H5 H 0 1 N N N N N N 8.864 6.816 13.102 7.367 2.919 -1.873 H5 6CF 33
6CF H6 H6 H 0 1 N N N N N N 6.481 6.830 12.623 6.016 1.007 -2.591 H6 6CF 34
6CF "H1'" "H1'" H 0 1 N N N N N N 5.077 8.195 9.555 4.583 -0.687 -2.113 "H1'" 6CF 35
6CF HO1A HO1A H 0 0 N N N N N N 4.079 5.807 16.831 -0.493 0.615 1.923 HO1A 6CF 36
6CF HO1G HO1G H 0 0 N N N N N N 2.704 2.678 17.217 -7.646 2.636 -1.443 HO1G 6CF 37
6CF "H2'" "H2'" H 0 1 N N N N N N 4.055 6.126 8.975 5.761 -2.437 -1.088 "H2'" 6CF 38
6CF "H2'A" "H2'A" H 0 0 N N N N N N 5.705 5.545 9.188 5.680 -1.670 0.529 "H2'A" 6CF 39
6CF HO2B HO2B H 0 0 N N N N N N 2.147 3.368 13.777 -4.505 -2.041 -0.109 HO2B 6CF 40
6CF HO2G HO2G H 0 0 N N N N N N 4.616 -0.316 17.400 -7.229 -0.493 -1.457 HO2G 6CF 41
6CF "H3'" "H3'" H 0 1 N N N N N N 5.294 4.843 11.502 3.780 -2.890 1.013 "H3'" 6CF 42
6CF "HO3'" "HO3'" H 0 0 N N N N N N 3.708 3.521 11.322 4.604 -4.530 -0.551 "HO3'" 6CF 43
6CF "H4'" "H4'" H 0 1 N N N N N N 2.676 6.483 11.347 2.403 -2.089 -1.557 "H4'" 6CF 44
6CF "H5'" "H5'" H 0 1 N N N N N N 2.716 6.805 13.564 1.218 -2.967 0.511 "H5'" 6CF 45
6CF "H5'A" "H5'A" H 0 0 N N N N N N 3.176 5.079 13.319 1.783 -1.521 1.382 "H5'A" 6CF 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6CF C2 N1 SING N N 1
6CF "C1'" N1 SING N N 2
6CF N1 C6 SING N N 3
6CF "O5'" P1 SING N N 4
6CF C3A P1 SING N N 5
6CF P1 O2A DOUB N N 6
6CF P1 O1A SING N N 7
6CF O2 C2 DOUB N N 8
6CF C2 N3 SING N N 9
6CF O1B P2 DOUB N N 10
6CF P2 O2B SING N N 11
6CF P2 C3A SING N N 12
6CF P2 O3B SING N N 13
6CF N3 C4 DOUB N N 14
6CF O3B P3 SING N N 15
6CF P3 O3G DOUB N N 16
6CF P3 O1G SING N N 17
6CF P3 O2G SING N N 18
6CF C4 N4 SING N N 19
6CF C4 C5 SING N N 20
6CF N4 HN4 SING N N 21
6CF N4 HN4A SING N N 22
6CF C6 C5 DOUB N N 23
6CF C5 H5 SING N N 24
6CF C6 H6 SING N N 25
6CF "C2'" "C1'" SING N N 26
6CF "C1'" "O4'" SING N N 27
6CF "C1'" "H1'" SING N N 28
6CF F1A C3A SING N N 29
6CF O1A HO1A SING N N 30
6CF O1G HO1G SING N N 31
6CF "C2'" "C3'" SING N N 32
6CF "C2'" "H2'" SING N N 33
6CF "C2'" "H2'A" SING N N 34
6CF C3A F2A SING N N 35
6CF O2B HO2B SING N N 36
6CF O2G HO2G SING N N 37
6CF "O3'" "C3'" SING N N 38
6CF "C3'" "C4'" SING N N 39
6CF "C3'" "H3'" SING N N 40
6CF "O3'" "HO3'" SING N N 41
6CF "O4'" "C4'" SING N N 42
6CF "C4'" "C5'" SING N N 43
6CF "C4'" "H4'" SING N N 44
6CF "C5'" "O5'" SING N N 45
6CF "C5'" "H5'" SING N N 46
6CF "C5'" "H5'A" SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6CF SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)C(F)(F)P(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O
6CF SMILES_CANONICAL CACTVS 3.370 NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)C(F)(F)[P](O)(=O)O[P](O)(O)=O)O2
6CF SMILES CACTVS 3.370 NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)C(F)(F)[P](O)(=O)O[P](O)(O)=O)O2
6CF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO[P@](=O)(C(F)(F)[P@](=O)(O)OP(=O)(O)O)O)O
6CF SMILES "OpenEye OEToolkits" 1.7.2 C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(C(F)(F)P(=O)(O)OP(=O)(O)O)O)O
6CF InChI InChI 1.03 InChI=1S/C10H16F2N3O12P3/c11-10(12,29(20,21)27-30(22,23)24)28(18,19)25-4-6-5(16)3-8(26-6)15-2-1-7(13)14-9(15)17/h1-2,5-6,8,16H,3-4H2,(H,18,19)(H,20,21)(H2,13,14,17)(H2,22,23,24)/t5-,6+,8+/m0/s1
6CF InChIKey InChI 1.03 NCCTXZHZERSHKT-SHYZEUOFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6CF "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine"
6CF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-[bis(fluoranyl)-[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6CF 'Create component' 2011-04-19 RCSB
6CF 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6CF N1 N 5.557 3.318 1
6CF P1 P 9.562 -2.761 2
6CF C2 C 6.856 4.068 3
6CF O2 O 8.155 3.318 4
6CF P2 P 11.325 -5.188 5
6CF N3 N 6.856 5.568 6
6CF P3 P 13.699 -6.245 7
6CF C4 C 5.557 6.318 8
6CF N4 N 5.557 7.818 9
6CF C5 C 4.258 5.568 10
6CF C6 C 4.258 4.068 11
6CF "C1'" C 5.557 1.818 12
6CF F1A F 11.657 -3.093 13
6CF O1A O 8.348 -3.642 14
6CF O1B O 10.111 -6.069 15
6CF O1G O 13.855 -7.736 16
6CF "C2'" C 4.343 0.936 17
6CF F2A F 9.230 -4.856 18
6CF O2A O 10.775 -1.879 19
6CF O2B O 12.539 -4.306 20
6CF O2G O 13.542 -4.753 21
6CF "C3'" C 4.807 -0.490 22
6CF "O3'" O 3.925 -1.704 23
6CF C3A C 10.444 -3.974 24
6CF O3B O 12.207 -6.401 25
6CF O3G O 15.190 -6.088 26
6CF "C4'" C 6.307 -0.490 27
6CF "O4'" O 6.770 0.936 28
6CF "C5'" C 7.188 -1.704 29
6CF "O5'" O 8.680 -1.547 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6CF C2 N1 SINGLE NONE 1
6CF "C1'" N1 SINGLE BEGINDASH 2
6CF N1 C6 SINGLE NONE 3
6CF "O5'" P1 SINGLE NONE 4
6CF C3A P1 SINGLE NONE 5
6CF P1 O2A DOUBLE NONE 6
6CF P1 O1A SINGLE BEGINWEDGE 7
6CF O2 C2 DOUBLE NONE 8
6CF C2 N3 SINGLE NONE 9
6CF O1B P2 DOUBLE NONE 10
6CF P2 O2B SINGLE BEGINWEDGE 11
6CF P2 C3A SINGLE NONE 12
6CF P2 O3B SINGLE NONE 13
6CF N3 C4 DOUBLE NONE 14
6CF O3B P3 SINGLE NONE 15
6CF P3 O3G DOUBLE NONE 16
6CF P3 O1G SINGLE NONE 17
6CF P3 O2G SINGLE NONE 18
6CF C4 N4 SINGLE NONE 19
6CF C4 C5 SINGLE NONE 20
6CF C6 C5 DOUBLE NONE 21
6CF "C2'" "C1'" SINGLE NONE 22
6CF "C1'" "O4'" SINGLE NONE 23
6CF F1A C3A SINGLE NONE 24
6CF "C2'" "C3'" SINGLE NONE 25
6CF C3A F2A SINGLE NONE 26
6CF "C3'" "O3'" SINGLE BEGINWEDGE 27
6CF "C3'" "C4'" SINGLE NONE 28
6CF "O4'" "C4'" SINGLE NONE 29
6CF "C4'" "C5'" SINGLE BEGINDASH 30
6CF "C5'" "O5'" SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6CF MurckoScaffold S1 scaffold 'O=c1ncccn1[C@H]1CCCO1' InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1 AKXKPKRAUWTVBW-SSDOTTSWSA-N
6CF deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
6CF phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
6CF pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6CF N1 S1 1
6CF C2 S1 1
6CF O2 S1 1
6CF N3 S1 1
6CF C4 S1 1
6CF C5 S1 1
6CF C6 S1 1
6CF "C1'" S1 1
6CF "C2'" S1 1
6CF "C3'" S1 1
6CF "C4'" S1 1
6CF "O4'" S1 1
6CF "C1'" F1 1
6CF "C2'" F1 1
6CF "C3'" F1 1
6CF "O3'" F1 1
6CF "C4'" F1 1
6CF "O4'" F1 1
6CF "C5'" F1 1
6CF "O5'" F1 1
6CF O1G F2 1
6CF P3 F2 1
6CF O3G F2 1
6CF O3B F2 1
6CF O2G F2 1
6CF C5 F3 1
6CF C4 F3 1
6CF N3 F3 1
6CF C2 F3 1
6CF N1 F3 1
6CF C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6CF
_pdbe_chem_comp_rdkit_properties.exactmw 500.991
_pdbe_chem_comp_rdkit_properties.amw 501.165
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 187.913
_pdbe_chem_comp_rdkit_properties.tpsa 240.960
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.040
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.406
_pdbe_chem_comp_rdkit_properties.chi0v 16.021
_pdbe_chem_comp_rdkit_properties.chi1v 11.059
_pdbe_chem_comp_rdkit_properties.chi2v 7.405
_pdbe_chem_comp_rdkit_properties.chi3v 7.405
_pdbe_chem_comp_rdkit_properties.chi4v 4.848
_pdbe_chem_comp_rdkit_properties.chi0n 29.338
_pdbe_chem_comp_rdkit_properties.chi1n 13.949
_pdbe_chem_comp_rdkit_properties.chi2n 2.626
_pdbe_chem_comp_rdkit_properties.chi3n 2.626
_pdbe_chem_comp_rdkit_properties.chi4n 1.438
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.090
_pdbe_chem_comp_rdkit_properties.kappa1 10.684
_pdbe_chem_comp_rdkit_properties.kappa2 8.449
_pdbe_chem_comp_rdkit_properties.kappa3 5.387
_pdbe_chem_comp_rdkit_properties.Phi 3.009
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6CF UniChem PDBe 6CF
6CF UniChem ZINC ZINC000098208543
6CF UniChem 'PubChem TPHARMA' 81071288
6CF UniChem PubChem 42632220
6CF UniChem Nikkaji J2.724.482C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6CF N1 -3.609 -0.098 -0.754 ETKDGv3 1
6CF P1 1.962 0.532 2.594 ETKDGv3 2
6CF C2 -4.622 -0.363 -1.742 ETKDGv3 3
6CF O2 -5.045 -1.533 -1.942 ETKDGv3 4
6CF P2 3.788 -0.877 0.676 ETKDGv3 5
6CF N3 -5.152 0.721 -2.512 ETKDGv3 6
6CF P3 5.347 0.339 -1.278 ETKDGv3 7
6CF C4 -4.716 1.936 -2.357 ETKDGv3 8
6CF N4 -5.270 2.990 -3.145 ETKDGv3 9
6CF C5 -3.647 2.232 -1.379 ETKDGv3 10
6CF C6 -3.128 1.254 -0.630 ETKDGv3 11
6CF "C1'" -2.987 -1.190 0.010 ETKDGv3 12
6CF F1A 3.773 1.719 1.133 ETKDGv3 13
6CF O1A 3.052 0.140 3.827 ETKDGv3 14
6CF O1B 2.862 -2.047 0.922 ETKDGv3 15
6CF O1G 6.229 -0.023 -2.676 ETKDGv3 16
6CF "C2'" -1.743 -1.699 -0.697 ETKDGv3 17
6CF F2A 1.997 0.927 -0.007 ETKDGv3 18
6CF O2A 1.321 1.865 2.918 ETKDGv3 19
6CF O2B 5.100 -1.010 1.738 ETKDGv3 20
6CF O2G 4.422 1.727 -1.568 ETKDGv3 21
6CF "C3'" -0.864 -2.136 0.443 ETKDGv3 22
6CF "O3'" -0.991 -3.517 0.688 ETKDGv3 23
6CF C3A 2.879 0.670 1.025 ETKDGv3 24
6CF O3B 4.320 -0.979 -0.942 ETKDGv3 25
6CF O3G 6.319 0.597 -0.146 ETKDGv3 26
6CF "C4'" -1.376 -1.304 1.630 ETKDGv3 27
6CF "O4'" -2.636 -0.752 1.305 ETKDGv3 28
6CF "C5'" -0.412 -0.166 1.985 ETKDGv3 29
6CF "O5'" 0.790 -0.707 2.483 ETKDGv3 30
6CF HN4 -4.931 3.971 -3.036 ETKDGv3 31
6CF HN4A -6.023 2.791 -3.840 ETKDGv3 32
6CF H5 -3.277 3.244 -1.272 ETKDGv3 33
6CF H6 -2.337 1.492 0.070 ETKDGv3 34
6CF "H1'" -3.708 -2.029 0.128 ETKDGv3 35
6CF HO1A 2.484 -0.025 4.622 ETKDGv3 36
6CF HO1G 6.781 0.782 -2.845 ETKDGv3 37
6CF "H2'" -1.977 -2.529 -1.399 ETKDGv3 38
6CF "H2'A" -1.244 -0.875 -1.255 ETKDGv3 39
6CF HO2B 5.559 -1.846 1.469 ETKDGv3 40
6CF HO2G 5.084 2.445 -1.732 ETKDGv3 41
6CF "H3'" 0.201 -1.924 0.201 ETKDGv3 42
6CF "HO3'" -1.944 -3.710 0.894 ETKDGv3 43
6CF "H4'" -1.495 -1.948 2.529 ETKDGv3 44
6CF "H5'" -0.890 0.464 2.768 ETKDGv3 45
6CF "H5'A" -0.247 0.451 1.072 ETKDGv3 46
#